Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000371.1

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

46227 .. 47024

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000371.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgcaggcactgccttctgggttctactgttctttccatatccgccctgtaactcgcagcttcagctctttcctaggacaatacaaccatgttggtagggaaaggcaagtgaacgaatcagatgtgaagaacctagtctatctccaagccattatcaaggaaaccttgcggctataccctgctacacctctctcagtaccacatgaatccagagaagaatgcagaataggtaactatcatgtcacctcaggcacgcatcttcttatcaacctttcgaagattcatcacaatccaaatgtctggctcgacccttgtctattccaaccagaaaggtttcttacaactcacaagaatgttgatgtcaggggccagagttttgaatttataccatttggaagtggtagacgaatatgtccaggaatatctctagcacttcaagttactcaacttacactggctcacttaattcatgggtttgaaattacagccccatctgatgaaccacttgatatgggtgagagttcaggaataacaaacatgaagataaccccactggaggtctttctcaccccatgcctacatcctaaactttatgaaaatgttgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko00981 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map00981 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

202

Amino Acids

22.88

Weight (kDa)

6.59

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	43, 169
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	3 cut(s)	380, 437, 479
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	2 cut(s)	60, 66
AluI	AGCT	2 cut(s)	60, 66
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	333
AspA2I	CCTAGG	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	235, 527, 559
AsuII	TTCGAA	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	499
BciT130I	CCWGG	1 cut(s)	417
BfaI	CTAG	4 cut(s)	74, 134, 428, 607
BisI	GCNGC	2 cut(s)	58, 170
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	2 cut(s)	59, 171
Bme1390I	CCNGG	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	575
Bpu14I	TTCGAA	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	459, 558
Bse21I	CCTNAGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	207, 261
BseNI	ACTGG	2 cut(s)	459, 558
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	275
BspACI	CCGC	2 cut(s)	43, 169
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	206, 260
BspLI	GGNNCC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	459, 558
BssECI	CCNNGG	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	6, 254
BstDEI	CTNAG	2 cut(s)	193, 247
BstF5I	GGATG	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 63
BstNI	CCWGG	1 cut(s)	417
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	8
BtsIMutI	CAGTG	3 cut(s)	8, 452, 551
Cac8I	GCNNGC	2 cut(s)	6, 254
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	6 cut(s)	89, 203, 239, 470, 538, 573
CviJI	RGCY	8 cut(s)	60, 66, 149, 172, 304, 369, 458, 488
CviKI_1	RGCY	8 cut(s)	60, 66, 149, 172, 304, 369, 458, 488
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	2 cut(s)	193, 247
DrdI	GACNNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	6 cut(s)	92, 206, 242, 473, 541, 576
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	6 cut(s)	88, 202, 238, 469, 537, 572
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	58, 170
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	58, 170
FspBI	CTAG	4 cut(s)	74, 134, 428, 607
GluI	GCNGC	2 cut(s)	58, 170
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	369
Hin1II	CATG	6 cut(s)	92, 206, 242, 473, 541, 576
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	3 cut(s)	116, 206, 280
HphI	GGTGA	3 cut(s)	235, 527, 559
Hpy166II	GTNNAC	3 cut(s)	112, 404, 604
Hpy188I	TCNGA	2 cut(s)	121, 496
Hpy188III	TCNNGA	2 cut(s)	210, 525
Hpy8I	GTNNAC	3 cut(s)	112, 404, 604
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	4, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 63
HpyF3I	CTNAG	2 cut(s)	193, 247
Hsp92II	CATG	6 cut(s)	92, 206, 242, 473, 541, 576
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	4 cut(s)	74, 134, 428, 607
MaeIII	GTNAC	4 cut(s)	49, 230, 241, 439
MboII	GAAGA	5 cut(s)	139, 227, 251, 289, 553
MluCI	AATT	3 cut(s)	380, 465, 480
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	198, 256, 550
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	10, 63
NlaIII	CATG	6 cut(s)	92, 206, 242, 473, 541, 576
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	275
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	116, 206, 280
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	2 cut(s)	59, 171
PshAI	GACNNNNGTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	2 cut(s)	58, 170
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	380, 465, 480
SsiI	CCGC	2 cut(s)	43, 169
SspMI	CTAG	4 cut(s)	74, 134, 428, 607
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	275, 306
TasI	AATT	3 cut(s)	380, 465, 480
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	116, 206, 280
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	3 cut(s)	15, 459, 558
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	6 cut(s)	219, 272, 458, 513, 554, 609
TspRI	CASTG	3 cut(s)	15, 459, 558
XapI	RAATTY	1 cut(s)	380
XmaJI	CCTAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	4 cut(s)	74, 134, 428, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.