Rroxscaffold_2G00136070

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
73619109 .. 73623695
4587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136070.1

Sequence Viewer

Length: 522 bp
ATGAGGTTTGACTCGTATTCGGTGACGCCGTTGGTGTCGGGGTTTAGGGACTTCATCCACCCGAGCTTGTGGTCGACGGAGCGGTTCTCTTGGACCAGAACCACCACCGTTCGATGGGGCAGCTACTTTTGGCTATCATGCTCCAAGGGCACAAGGTTGATCACAAACCTTCAGAAGATTCAAACTGACCCACGAATATGGTCTAACCCATTAGAGTTCAAGCCGGAGAGATTCTTGACCACCCACAAGACCACAGATGTTCGAGGTCAGCATTTTGAGTTAATTCCGTTCGGAAGCGGTACAAGAGTGTGCCGTGGTTCATCATTTGGGGTTCAAACGGTACAGTTCACGTTGGCTAGCTTTCTGCATGTAATCAAAATCTCGACTCCTTCCAATGATCTGGTTAATGTATATATATATATATATATATATATATCTGAAAGCTCTGGTCTCACAAACATGAAAGCCACTCCGCTTGAATTTCTTATCAAACCTCAGTTGTCTTCCCAACTTTATGCATAA

Protein Analysis

173

Amino Acids

19.96

Weight (kDa)

9.65

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 130 2e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 74
AciI CCGC 3 cut(s) 82, 297, 473
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 2 cut(s) 301, 342
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 4 cut(s) 182, 220, 335, 479
AluBI AGCT 4 cut(s) 66, 123, 360, 444
AluI AGCT 4 cut(s) 66, 123, 360, 444
Alw26I GTCTC 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 34
AsuNHI GCTAGC 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 108
BceAI ACGGC 2 cut(s) 13, 297
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 357
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 93
BmtI GCTAGC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 144, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 144, 313
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 455
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 159, 397
BspACI CCGC 3 cut(s) 82, 297, 473
BspCNI CTCAG 1 cut(s) 508
BspOI GCTAGC 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 144, 313
BssMI GATC 2 cut(s) 159, 397
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 109, 340, 345
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 2 cut(s) 162, 400
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 159, 397
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 495
BstXI CCANNNNNNTGG 2 cut(s) 198, 400
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 93
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 300, 341
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 3 cut(s) 138, 368, 460
CviJI RGCY 8 cut(s) 66, 123, 133, 223, 356, 360, 444, 467
CviKI_1 RGCY 8 cut(s) 66, 123, 133, 223, 356, 360, 444, 467
CviQI GTAC 2 cut(s) 300, 341
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 161, 399
DpnII GATC 2 cut(s) 159, 397
Eco130I CCWWGG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 141, 371, 463
FaqI GGGAC 1 cut(s) 62
FatI CATG 3 cut(s) 137, 367, 459
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 121
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 3 cut(s) 141, 371, 463
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 4 cut(s) 11, 178, 231, 385
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 75, 348
Hpy188I TCNGA 3 cut(s) 174, 293, 439
Hpy188III TCNNGA 2 cut(s) 235, 382
Hpy8I GTNNAC 2 cut(s) 75, 348
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 179, 399
HpyCH4III ACNGT 3 cut(s) 109, 340, 345
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 367, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 3 cut(s) 141, 371, 463
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 397
LmnI GCTCC 2 cut(s) 79, 146
LpnPI CCDG 4 cut(s) 109, 237, 386, 432
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 161, 399
MbiI CCGCTC 1 cut(s) 82
MboI GATC 2 cut(s) 159, 397
MboII GAAGA 2 cut(s) 187, 495
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 282, 479
MlyI GAGTC 2 cut(s) 5, 379
MnlI CCTC 2 cut(s) 257, 504
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 2 cut(s) 281, 405
MslI CAYNNNNRTG 2 cut(s) 196, 458
MspI CCGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 2 cut(s) 159, 397
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 3 cut(s) 141, 371, 463
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 2 cut(s) 178, 231
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 2 cut(s) 5, 379
PpsI GAGTC 2 cut(s) 5, 379
PspPI GGNCC 1 cut(s) 93
RsaI GTAC 2 cut(s) 301, 342
RsaNI GTAC 2 cut(s) 300, 341
RseI CAYNNNNRTG 2 cut(s) 196, 458
SalI GTCGAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 281, 405
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 159, 397
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 2 cut(s) 5, 379
SduI GDGCHC 1 cut(s) 152
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 196, 458
Sse9I AATT 2 cut(s) 282, 479
SsiI CCGC 3 cut(s) 82, 297, 473
SspMI CTAG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 109, 340, 345
TaiI ACGT 1 cut(s) 353
TaqI TCGA 4 cut(s) 74, 112, 262, 383
TasI AATT 2 cut(s) 282, 479
TfiI GAWTC 2 cut(s) 178, 231
Tru1I TTAA 2 cut(s) 281, 405
Tru9I TTAA 2 cut(s) 281, 405
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 43, 309, 476
TspGWI ACGGA 2 cut(s) 92, 276
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 74
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.