Rroxscaffold_2G00136040

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
73603161 .. 73604554
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136040.1

Sequence Viewer

Length: 519 bp
ATGTTGGCTAATTTTCCACTTCATCGCAGAATTGAAAATCAAGAGGCATCTTACAGAACTAGCTATAGTTATCTGGTTCCTATAGTGCAAGAGTACCAAAGCACTAAAAGGGCTCAAGATACTGCCAAAGCAGATCTAAAAAGCCAAAAGTCGAAGGCGAAATTAGCACTTGAAGCAAAGGGCGCATGGCCTTTTCTTGGTCATCTTCCCTTGTTCAGAGGACCGCAGCCTCCCTACATAGCATTTGGAGCCATGGCTGACAAGTATGGATCACTTTTCTTGGTACGGCTTGGTGTCTATCAAACTTTGGTGCGCTACTGTATTACCACTGATGAGAACCAGAAGGAAGAAGCGCGTCGAGTACATGATGCATTGAGAGAGTTTTCTTACTTTATCGGGCTTTTGGCGATAGGTGATGCTCTTCCTTATCTTCAGTGGTTGGATTCAGGTGGACATGAGAAAGGGATGAAGAAAACTGCAAAGAAAATAGACGCCATTAAGTTCTATTCCTTTGGATAA

Protein Analysis

172

Amino Acids

19.59

Weight (kDa)

9.5

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 3 cut(s) 95, 285, 363
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 35, 173
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 3 cut(s) 185, 315, 355
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 425
AvaII GGWCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 302
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 64, 81
BglII AGATCT 1 cut(s) 133
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 78, 250
BmsI GCATC 3 cut(s) 56, 358, 406
BpuEI CTTGAG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 133, 269
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 190
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 78, 250
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 133, 269
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 492
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 471
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 3 cut(s) 185, 315, 355
BstKTI GATC 2 cut(s) 136, 272
BstMBI GATC 2 cut(s) 133, 269
BstMWI GCNNNNNNNGC 4 cut(s) 164, 173, 182, 248
BstSFI CTRYAG 2 cut(s) 64, 81
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 327, 440
CfoI GCGC 3 cut(s) 185, 315, 355
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 2 cut(s) 344, 500
Csp6I GTAC 3 cut(s) 94, 284, 362
CviAII CATG 4 cut(s) 186, 253, 365, 455
CviQI GTAC 3 cut(s) 94, 284, 362
DpnI GATC 2 cut(s) 135, 271
DpnII GATC 2 cut(s) 133, 269
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 189, 256, 368, 458
FaiI YATR 8 cut(s) 66, 83, 187, 239, 254, 267, 366, 456
FatI CATG 4 cut(s) 185, 252, 364, 454
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 60
GlaI GCGC 3 cut(s) 184, 314, 354
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 190
HgaI GACGC 2 cut(s) 344, 500
HhaI GCGC 3 cut(s) 185, 315, 355
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 189, 256, 368, 458
Hin6I GCGC 3 cut(s) 183, 313, 353
HinP1I GCGC 3 cut(s) 183, 313, 353
HinfI GANTC 1 cut(s) 443
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 2 cut(s) 41, 116
Hpy8I GTNNAC 1 cut(s) 452
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 2 cut(s) 148, 337
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 88, 371, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 173, 182, 248
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 189, 256, 368, 458
HspAI GCGC 3 cut(s) 183, 313, 353
Kzo9I GATC 2 cut(s) 133, 269
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 3 cut(s) 59, 353, 432
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 3 cut(s) 56, 358, 406
MaeI CTAG 1 cut(s) 60
MalI GATC 2 cut(s) 135, 271
MboI GATC 2 cut(s) 133, 269
MboII GAAGA 5 cut(s) 197, 359, 413, 422, 481
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 10, 30, 161
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 3 cut(s) 37, 212, 240
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 498
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 4 cut(s) 164, 173, 182, 248
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 133, 269
NlaIII CATG 4 cut(s) 189, 256, 368, 458
NlaIV GGNNCC 2 cut(s) 78, 250
NsiI ATGCAT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 78, 250
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 3 cut(s) 95, 285, 363
RsaNI GTAC 3 cut(s) 94, 284, 362
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 133, 269
Sau96I GGNCC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 65, 415, 451
SfaNI GCATC 3 cut(s) 56, 358, 406
SfcI CTRYAG 2 cut(s) 64, 81
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 3 cut(s) 10, 30, 161
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 152, 358
TasI AATT 3 cut(s) 10, 30, 161
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 334, 440
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 11, 482
TspRI CASTG 2 cut(s) 334, 440
VpaK11BI GGWCC 1 cut(s) 221
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.