Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Forward (+)

26385583 .. 26386659

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGCTAGAAAGCGTTGCTCTTTTGCTATTGACAAGGAACAGAAGAAGGAAGCATGTGTAGTCCAGAAGGTGCTGAGGGAGTTCTTTAACTTTATGGGGATGTTATTAGTGGGCGATGTGATTCCTCATCTTCGGTGGTTGGAGTTAGGTGGACATGAGAAAGCCATGAAGAAAACGGGAAAAGAATTGGACGCCATTGTTGGAAATTGGGTGGAAGAGCATAAGCAAAAGAGAGCACCAGAAGGCGATGCAGCTCATAATTGTAAAGGGGAGCAAAACTTCATAGACACCATGATTCAATACTTGAAGGTGCCAACGTCGAGGGTTTTGATGCGGATACCATTACAAAGCCACAAGCTTGGAGGCAACGATACCACCATGATCACTTTGACATGGGCAATAGCTTTACTGTTAAACAACTGTGAAAACTTGAAAAGAGCCCAAGATGAAGTAGAAACCGAGATAGGAAGAGAGAGATTTCTGAGTGAGTTGGATATGAGCAAGCTAGTCTATATCCAAGCCATAGTGAAAGAGACGCTTCGGTTATACTCAACAGCACCATTATTAGCACCACATGAATTCGACAAGGACTGTACCATAGGGTACACAGTTGATCACAAACCTATGGAAGATTCAACCAACCCAAAAATGCGGCTGGATGACCCATTAGGGTTCAAGCCGGAGAGATTTCAAACCACCCATAAGGATGTCAATGTTAAGGGTCAACACTTTGGGTTCATTCCATTTGGAAGTGGAAGAAGAGCATGCCCTGGACTATCTTTTGGTATTCAAATGGTGCAATTTACATTGGCCAACTTCCTACATGCGTTCCAAGTTTCAACTTTTTCTGATAATGCACCAATTGATATGACCAAGAGTTTTGGGCTCACTAACGTCAAGGCCACTCCACTTGCAGTTCTCATCAAACCCCATTTGTCTCATAAGCTTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

319

Amino Acids

36.23

Weight (kDa)

8.9

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	9 - 299	8e-42	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	2 cut(s)	337, 655
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	598, 608
AgsI	TTSAA	8 cut(s)	302, 310, 436, 639, 679, 695, 794, 843
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	5 cut(s)	257, 361, 407, 508, 949
AluI	AGCT	5 cut(s)	257, 361, 407, 508, 949
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	530, 945
AoxI	GGCC	2 cut(s)	813, 903
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	581
BalI	TGGCCA	1 cut(s)	815
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	445, 891
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	333
BclI	TGATCA	2 cut(s)	384, 616
BcoDI	GTCTC	2 cut(s)	530, 945
BfaI	CTAG	2 cut(s)	9, 509
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	2 cut(s)	255, 656
BlsI	GCNGC	2 cut(s)	256, 657
Bme1390I	CCNGG	1 cut(s)	774
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	2 cut(s)	241, 324
Bpu10I	CCTNAGC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	772
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	3 cut(s)	108, 667, 715
BseMII	CTCAG	2 cut(s)	68, 476
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	815, 905
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	683
BsmAI	GTCTC	2 cut(s)	530, 945
BsmBI	CGTCTC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	815, 905
Bsp1286I	GDGCHC	3 cut(s)	241, 445, 891
Bsp143I	GATC	2 cut(s)	384, 616
BspACI	CCGC	2 cut(s)	337, 655
BspANI	GGCC	2 cut(s)	815, 905
BspCNI	CTCAG	2 cut(s)	69, 477
BspLI	GGNNCC	1 cut(s)	315
BspQI	GCTCTTC	2 cut(s)	213, 757
BspT107I	GGYRCC	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	2 cut(s)	384, 616
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	414, 425, 596, 613
Bst6I	CTCTTC	3 cut(s)	213, 466, 757
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	506, 769
BstDEI	CTNAG	2 cut(s)	77, 485
BstF5I	GGATG	3 cut(s)	108, 667, 715
BstKTI	GATC	2 cut(s)	387, 619
BstMAI	GTCTC	2 cut(s)	530, 945
BstMBI	GATC	2 cut(s)	384, 616
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	3 cut(s)	60, 771, 830
BstSCI	CCNGG	1 cut(s)	772
BstV1I	GCAGC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	815, 905
BtgZI	GCGATG	2 cut(s)	132, 264
BtsCI	GGATG	3 cut(s)	108, 667, 715
Cac8I	GCNNGC	2 cut(s)	506, 769
CseI	GACGC	2 cut(s)	203, 547
Csp6I	GTAC	2 cut(s)	597, 607
CspCI	CAANNNNNGTGG	2 cut(s)	895, 930
CviAII	CATG	9 cut(s)	57, 158, 169, 295, 382, 396, 578, 768, 827
CviQI	GTAC	2 cut(s)	597, 607
DdeI	CTNAG	2 cut(s)	77, 485
DpnI	GATC	2 cut(s)	386, 618
DpnII	GATC	2 cut(s)	384, 616
EaeI	YGGCCR	1 cut(s)	813
Eam1104I	CTCTTC	3 cut(s)	213, 466, 757
EarI	CTCTTC	3 cut(s)	213, 466, 757
Eco24I	GRGCYC	2 cut(s)	445, 891
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	772
EcoT38I	GRGCYC	2 cut(s)	445, 891
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	9 cut(s)	60, 161, 172, 298, 385, 399, 581, 771, 830
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	9 cut(s)	56, 157, 168, 294, 381, 395, 577, 767, 826
FbaI	TGATCA	2 cut(s)	384, 616
Fnu4HI	GCNGC	2 cut(s)	255, 656
FokI	GGATG	3 cut(s)	115, 674, 722
FriOI	GRGCYC	2 cut(s)	445, 891
Fsp4HI	GCNGC	2 cut(s)	255, 656
FspBI	CTAG	2 cut(s)	9, 509
GluI	GCNGC	2 cut(s)	255, 656
HaeIII	GGCC	2 cut(s)	815, 905
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	2 cut(s)	203, 547
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	9 cut(s)	60, 161, 172, 298, 385, 399, 581, 771, 830
HincII	GTYRAC	1 cut(s)	728
HindII	GTYRAC	1 cut(s)	728
HindIII	AAGCTT	2 cut(s)	359, 947
HinfI	GANTC	3 cut(s)	124, 298, 635
HpaII	CCGG	1 cut(s)	683
Hpy166II	GTNNAC	3 cut(s)	155, 609, 728
Hpy188I	TCNGA	2 cut(s)	486, 853
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	155, 609, 728
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	43, 64, 239, 304
HpyCH4III	ACNGT	4 cut(s)	414, 425, 596, 613
HpyCH4IV	ACGT	2 cut(s)	320, 897
HpyCH4V	TGCA	4 cut(s)	254, 802, 860, 917
HpyF3I	CTNAG	2 cut(s)	77, 485
HpySE526I	ACGT	2 cut(s)	320, 897
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	9 cut(s)	60, 161, 172, 298, 385, 399, 581, 771, 830
Ksp22I	TGATCA	2 cut(s)	384, 616
Kzo9I	GATC	2 cut(s)	384, 616
LguI	GCTCTTC	2 cut(s)	213, 757
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	80, 255, 644, 696, 759, 786
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	241, 324
MaeI	CTAG	2 cut(s)	9, 509
MaeII	ACGT	2 cut(s)	320, 897
MalI	GATC	2 cut(s)	386, 618
MboI	GATC	2 cut(s)	384, 616
MboII	GAAGA	8 cut(s)	58, 125, 184, 230, 483, 644, 771, 774
MfeI	CAATTG	1 cut(s)	864
MhlI	GDGCHC	3 cut(s)	241, 445, 891
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	6 cut(s)	188, 208, 262, 581, 803, 864
MluNI	TGGCCA	1 cut(s)	815
MmeI	TCCRAC	3 cut(s)	123, 184, 474
MnlI	CCTC	4 cut(s)	72, 138, 318, 359
Mox20I	TGGCCA	1 cut(s)	815
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	3 cut(s)	90, 416, 720
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	815
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	774
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	1 cut(s)	774
NdeII	GATC	2 cut(s)	384, 616
NlaIII	CATG	9 cut(s)	60, 161, 172, 298, 385, 399, 581, 771, 830
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	3 cut(s)	60, 771, 830
PaeI	GCATGC	1 cut(s)	771
PciSI	GCTCTTC	2 cut(s)	213, 757
PfeI	GAWTC	3 cut(s)	124, 298, 635
PkrI	GCNGC	2 cut(s)	256, 657
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	315
RsaI	GTAC	2 cut(s)	598, 608
RsaNI	GTAC	2 cut(s)	597, 607
RseI	CAYNNNNRTG	1 cut(s)	708
SapI	GCTCTTC	2 cut(s)	213, 757
SaqAI	TTAA	3 cut(s)	90, 416, 720
SatI	GCNGC	2 cut(s)	255, 656
Sau3AI	GATC	2 cut(s)	384, 616
ScrFI	CCNGG	1 cut(s)	774
SduI	GDGCHC	3 cut(s)	241, 445, 891
SfaNI	GCATC	2 cut(s)	241, 324
SmiMI	CAYNNNNRTG	1 cut(s)	708
SphI	GCATGC	1 cut(s)	771
Sse9I	AATT	6 cut(s)	188, 208, 262, 581, 803, 864
SsiI	CCGC	2 cut(s)	337, 655
SspMI	CTAG	2 cut(s)	9, 509
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	414, 425, 596, 613
TaiI	ACGT	2 cut(s)	323, 900
TaqI	TCGA	2 cut(s)	323, 585
TasI	AATT	6 cut(s)	188, 208, 262, 581, 803, 864
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	3 cut(s)	124, 298, 635
Tru1I	TTAA	3 cut(s)	90, 416, 720
Tru9I	TTAA	3 cut(s)	90, 416, 720
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	5 cut(s)	185, 274, 465, 594, 730
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	3 cut(s)	60, 771, 830
XspI	CTAG	2 cut(s)	9, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.