Rh5DG412400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
65508777 .. 65513038
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG412400.1

Sequence Viewer

Length: 405 bp
ATGACCGAGAGTTCTGGGCTCACAAACGTCAAAGCTACTCCACTTGAAGTTCTCATCAAACCTCCACCACACAAAATATGCAATCCTAATTTTGAAGCAACAGTATTATCTTCCAACTATCACAACATTCTCGATCAGGCCAAGAATATTGAGAGACTTTATGGCGTGCCTCTCATTATAGTTCCGGCAAGAGGGATCCTCAAACGTTCGATCTGCTCTTTTAATTATGAATCACTTAAACTAAATATAGATCTTGGCGTTGTGACACAGTACAGAGGCTGGGAATGTCAACCTGTGAACAGAAAGCGCTCCTGCTCTTTAGTGGCCTGTAAAAGTGCTAACTTTGAAGCAGCAACCCTTGAGTCAATTCCGTTGCAAGCGTTATCAGTTGACAATGTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

8.3

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 205
AclWI GGATC 2 cut(s) 190, 203
AfaI GTAC 1 cut(s) 272
AfeI AGCGCT 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 47, 95, 347
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 190, 203
AlwNI CAGNNNCTG 1 cut(s) 279
Aor51HI AGCGCT 1 cut(s) 308
AoxI GGCC 2 cut(s) 138, 324
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 309
BamHI GGATCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 310
BglII AGATCT 1 cut(s) 250
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpuEI CTTGAG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 279
BshFI GGCC 2 cut(s) 140, 326
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 2 cut(s) 140, 326
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 133, 195, 210, 250
BspANI GGCC 2 cut(s) 140, 326
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 190, 203
BssMI GATC 4 cut(s) 133, 195, 210, 250
Bst4CI ACNGT 2 cut(s) 103, 270
BstC8I GCNNGC 2 cut(s) 167, 378
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 4 cut(s) 136, 198, 213, 253
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 4 cut(s) 133, 195, 210, 250
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 2 cut(s) 195, 250
BstYI RGATCY 2 cut(s) 195, 250
BsuRI GGCC 2 cut(s) 140, 326
Cac8I GCNNGC 2 cut(s) 167, 378
CaiI CAGNNNCTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 271
CviJI RGCY 5 cut(s) 19, 35, 140, 279, 326
CviKI_1 RGCY 5 cut(s) 19, 35, 140, 279, 326
CviQI GTAC 1 cut(s) 271
DpnI GATC 4 cut(s) 135, 197, 212, 252
DpnII GATC 4 cut(s) 133, 195, 210, 250
Eco24I GRGCYC 1 cut(s) 21
Eco47III AGCGCT 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 21
FaiI YATR 5 cut(s) 79, 162, 179, 228, 248
Fnu4HI GCNGC 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 351
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 2 cut(s) 140, 326
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 309
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 2 cut(s) 290, 391
HindII GTYRAC 2 cut(s) 290, 391
HinfI GANTC 2 cut(s) 230, 362
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 290, 298, 391
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 290, 298, 391
HpyCH4III ACNGT 2 cut(s) 103, 270
HpyCH4IV ACGT 2 cut(s) 27, 205
HpyCH4V TGCA 2 cut(s) 81, 376
HpySE526I ACGT 2 cut(s) 27, 205
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 133, 195, 210, 250
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 6 cut(s) 122, 198, 265, 306, 325, 340
Lsp1109I GCAGC 1 cut(s) 362
MaeII ACGT 2 cut(s) 27, 205
MaeIII GTNAC 1 cut(s) 262
MalI GATC 4 cut(s) 135, 197, 212, 252
MboI GATC 4 cut(s) 133, 195, 210, 250
MboII GAAGA 1 cut(s) 102
MflI RGATCY 2 cut(s) 195, 250
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 88, 223, 366
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 72, 180, 185, 209, 269
MseI TTAA 2 cut(s) 222, 237
MspI CCGG 1 cut(s) 185
NdeII GATC 4 cut(s) 133, 195, 210, 250
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp1406I AACGTT 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 279
PsuI RGATCY 2 cut(s) 195, 250
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 222, 237
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 4 cut(s) 133, 195, 210, 250
SchI GAGTC 1 cut(s) 371
SduI GDGCHC 1 cut(s) 21
SetI ASST 5 cut(s) 30, 37, 64, 208, 295
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 3 cut(s) 88, 223, 366
SspI AATATT 1 cut(s) 148
TaaI ACNGT 2 cut(s) 103, 270
TaiI ACGT 2 cut(s) 30, 208
TaqI TCGA 2 cut(s) 132, 209
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 88, 223, 366
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 222, 237
Tru9I TTAA 2 cut(s) 222, 237
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.