Rorug03G0204200

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
18111344 .. 18113333
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0204200.1

Sequence Viewer

Length: 612 bp
ATGGCAATTGTGCCAATCACAGCCGCTGGTGCTCCCGGTGCTGTTTCTGGAGCACTAGTTACTCCAGGATATCGGGATGGTGCTCAATCACAGCTTTGGTTACAACTGGACTTGGAGCATCTTTTGCCAGCTCCTATTGGTTTTGTTGACAGCAAGACACAAGTTACTCGGTGGGAAGAGGGGAATGGTGTTGGTAAGATGGGCCGTTTTGGCTCTATCTTGTGCCCCATTTGGATGAGGCCGAAGTTGGTATTGATAGGACACAGAGGAAATGGAACGAACATGTTGCAGTCCTCTGATATCATAATGAGAGGAATCAAAGGGAACTCAATCCTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTCGACGTTCAGGTGACCAAAGATGACTGTCCAGTAATTTTCCATGACAGCTTTATCGTCAGCGAGGACAAGTTTGATGATCACATAGTCTACAAAGAGAGACAGCTCAAGCATGTTCTTCAAGTAATCTTGCAGGTATATTTCTTGCCTGAAGGAGGGTCTCAAATGTATGCTGATGTTAGAAAGAACTCTTGGGAAGAAGCAGTTAAGATGTGCATGGCAGGTGGTTTGTAA

Protein Analysis

203

Amino Acids

22.41

Weight (kDa)

5.7

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 88 - 146 5.5e-15 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 590
Acc36I ACCTGC 2 cut(s) 502, 590
AccI GTMKAC 1 cut(s) 468
AciI CCGC 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 2 cut(s) 343, 500
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 553, 585
AluBI AGCT 4 cut(s) 94, 131, 429, 484
AluI AGCT 4 cut(s) 94, 131, 429, 484
Alw21I GWGCWC 3 cut(s) 34, 55, 85
Alw26I GTCTC 2 cut(s) 472, 543
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 2 cut(s) 202, 239
ApeKI GCWGC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 227
Bbv12I GWGCWC 3 cut(s) 34, 55, 85
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 71, 193
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 472, 543
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 1 cut(s) 56
BfuAI ACCTGC 2 cut(s) 502, 590
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 24, 351
BlsI GCNGC 2 cut(s) 25, 352
Bme1390I CCNGG 2 cut(s) 36, 66
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 36, 66
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 2 cut(s) 48, 69
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 111, 410
BseBI CCWGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 82, 240
BseLI CCNNNNNNNGG 1 cut(s) 533
BseNI ACTGG 2 cut(s) 111, 410
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 204, 241
BsiHKAI GWGCWC 3 cut(s) 34, 55, 85
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 2 cut(s) 472, 543
BsnI GGCC 2 cut(s) 204, 241
Bso31I GGTCTC 1 cut(s) 543
Bsp1286I GDGCHC 4 cut(s) 34, 55, 85, 227
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 204, 241
BspMI ACCTGC 2 cut(s) 502, 590
BspTNI GGTCTC 1 cut(s) 543
BsrI ACTGG 2 cut(s) 111, 410
BssMI GATC 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 82, 240
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 2 cut(s) 472, 543
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 4 cut(s) 29, 38, 124, 210
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 2 cut(s) 286, 494
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 34, 64
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 337
BsuRI GGCC 2 cut(s) 204, 241
BtsCI GGATG 2 cut(s) 82, 240
BveI ACCTGC 2 cut(s) 502, 590
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 4 cut(s) 283, 422, 491, 595
CviJI RGCY 8 cut(s) 23, 94, 131, 204, 213, 241, 429, 484
CviKI_1 RGCY 8 cut(s) 23, 94, 131, 204, 213, 241, 429, 484
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 543
Eco32I GATATC 2 cut(s) 71, 301
Eco57I CTGAAG 1 cut(s) 549
Eco91I GGTNACC 1 cut(s) 391
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO65I GGTNACC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 2 cut(s) 71, 301
FaeI CATG 4 cut(s) 286, 425, 494, 598
FaiI YATR 8 cut(s) 284, 305, 423, 464, 492, 517, 549, 596
FatI CATG 4 cut(s) 282, 421, 490, 594
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 2 cut(s) 24, 351
FokI GGATG 2 cut(s) 89, 247
Fsp4HI GCNGC 2 cut(s) 24, 351
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 24, 351
GsuI CTGGAG 2 cut(s) 48, 69
HaeIII GGCC 2 cut(s) 204, 241
HapII CCGG 1 cut(s) 36
Hin1II CATG 4 cut(s) 286, 425, 494, 598
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 315
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 148, 469
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 48, 74
Hpy8I GTNNAC 2 cut(s) 148, 469
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 349, 524
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 3 cut(s) 289, 511, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 38, 124, 210
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 4 cut(s) 286, 425, 494, 598
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 4 cut(s) 37, 50, 115, 136
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 4 cut(s) 58, 99, 163, 391
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 3 cut(s) 188, 488, 587
MfeI CAATTG 2 cut(s) 6, 363
MhlI GDGCHC 4 cut(s) 34, 55, 85, 227
MluCI AATT 4 cut(s) 6, 356, 363, 414
MnlI CCTC 8 cut(s) 172, 231, 260, 304, 305, 344, 436, 527
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 36, 66
MunI CAATTG 2 cut(s) 6, 363
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 29, 38, 124, 210
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 457
NlaIII CATG 4 cut(s) 286, 425, 494, 598
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 2 cut(s) 286, 494
PaqCI CACCTGC 1 cut(s) 590
PciI ACATGT 1 cut(s) 282
PfeI GAWTC 1 cut(s) 315
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 25, 352
PscI ACATGT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 64
PspPI GGNCC 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 2 cut(s) 24, 351
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 36, 66
SduI GDGCHC 4 cut(s) 34, 55, 85, 227
SetI ASST 8 cut(s) 96, 133, 387, 393, 431, 486, 516, 604
SfaNI GCATC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 4 cut(s) 6, 356, 363, 414
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 34, 64
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 381
TasI AATT 4 cut(s) 6, 356, 363, 414
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 391
XagI CCTNNNNNAGG 1 cut(s) 531
XceI RCATGY 2 cut(s) 286, 494
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.