Rroxscaffold_1G00021450

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
26331661 .. 26332225
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021450.1

Sequence Viewer

Length: 468 bp
ATGAGGAAGAGAAGAACGAAGCACGTCAAGTCCAGAAAAGCAGTGAGGGAGTTCTTTAACTTTATGGGGATGTTATTGGTGGGCGATGTGATTCCTCATCTTCGGTGGTTAGATTTAGGTGGACATGAGAAAGCAATGAAGAAAACCGCAAAAGAATTGGACGCCATTGTTGGAAAATGGGTGGAAGAGCATAAGCAAAAGAGAGCACTAGAAGGCAATGATGCTCATAATTGTAAAGGGGAGCAAGACTTCATAGACATCATGATTTCGATACTTGAAGGTGCAGACCTCGGCGGTTTTGATGCAGATACCATCAACAAAGCCACAAGCTTGAATATGATTGCAGGAGGCAGTGATACCACCATGGTCACTTTGACATGGGCAATAGCATTACTATTAAACAACCGTGAAAAGTTGAAAAAAGCCCAAAATGAACTAGACACGACATTGGAAGAGAGAGATTTGTGA

Protein Analysis

155

Amino Acids

17.52

Weight (kDa)

7.87

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 10 - 153 5.3e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 147, 294
AcyI GRCGYC 1 cut(s) 162
AgsI TTSAA 3 cut(s) 278, 334, 418
AjiI CACGTC 1 cut(s) 25
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw21I GWGCWC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 1 cut(s) 320
BfaI CTAG 2 cut(s) 209, 437
BmgBI CACGTC 1 cut(s) 25
BmsI GCATC 2 cut(s) 211, 292
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 289, 363
Bse3DI GCAATG 2 cut(s) 141, 223
BseDI CCNNGG 2 cut(s) 289, 363
BseGI GGATG 1 cut(s) 75
BseMI GCAATG 2 cut(s) 141, 223
BsgI GTGCAG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 2 cut(s) 147, 294
BspHI TCATGA 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 141, 223
BssECI CCNNGG 2 cut(s) 289, 363
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 3 cut(s) 2, 180, 447
BstACI GRCGYC 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 75
BtsI GCAGTG 2 cut(s) 48, 358
BtsIMutI CAGTG 2 cut(s) 48, 358
CciI TCATGA 1 cut(s) 261
CseI GACGC 1 cut(s) 170
CviAII CATG 4 cut(s) 125, 262, 364, 378
CviJI RGCY 3 cut(s) 323, 330, 425
CviKI_1 RGCY 3 cut(s) 323, 330, 425
Eam1104I CTCTTC 3 cut(s) 2, 180, 447
EarI CTCTTC 3 cut(s) 2, 180, 447
Eco130I CCWWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 4 cut(s) 128, 265, 367, 381
FaiI YATR 9 cut(s) 65, 126, 192, 228, 254, 263, 338, 365, 379
FatI CATG 4 cut(s) 124, 261, 363, 377
FokI GGATG 1 cut(s) 82
FspBI CTAG 2 cut(s) 209, 437
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 128, 265, 367, 381
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 33, 262
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 206, 272
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 284, 305, 344
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 128, 265, 367, 381
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 2 cut(s) 46, 330
LweI GCATC 2 cut(s) 211, 292
MaeI CTAG 2 cut(s) 209, 437
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 367
MboII GAAGA 6 cut(s) 19, 24, 92, 151, 197, 464
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 155, 229
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 4 cut(s) 39, 105, 299, 341
MseI TTAA 2 cut(s) 57, 398
NcoI CCATGG 1 cut(s) 363
NlaIII CATG 4 cut(s) 128, 265, 367, 381
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 367
PagI TCATGA 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 57, 398
SduI GDGCHC 1 cut(s) 208
SetI ASST 5 cut(s) 27, 121, 283, 291, 332
SfaNI GCATC 2 cut(s) 211, 292
Sse9I AATT 2 cut(s) 155, 229
SsiI CCGC 2 cut(s) 147, 294
SspMI CTAG 2 cut(s) 209, 437
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 155, 229
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 57, 398
Tru9I TTAA 2 cut(s) 57, 398
TscAI CASTG 2 cut(s) 48, 358
TseFI GTSAC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 152, 241, 447
TspRI CASTG 2 cut(s) 48, 358
XspI CTAG 2 cut(s) 209, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.