FvH4_2g40590

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000137
Physical Location & Seq
Forward (+)
28909277 .. 28909719
443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40590.t1

Sequence Viewer

Length: 342 bp
ATGAAAAAGGAGGGCAACTCGGATGGTGACCGCGTAGTGTTGGTGGAGTTGAAAGAATTGTTGGGGGACTCGAGTTTAAATGTGATTCTTAGAATGATCTCCGGGAAGCGATATTCTTTTGCGGCCAATGATGATGAGAAGAAAGAAGCGGGTGGACATGAGAAGGAGATGAAGAAAACTGCAAAAGAAATGGATGCCATTCTTGAGGACTGGCTAGAAGAGCATAAGCGAAAGAGAGAACTCAGAGAGGAAGAAGATGATATAAAAGAGCCCGGTGACTTCATGGATGCATTGATTTATGCCCTGGAAGGAGCAGACCTTAGTGGTTATGATGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

4.61

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AciI CCGC 3 cut(s) 31, 122, 149
AcoI YGGCCR 1 cut(s) 123
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 1 cut(s) 123
AsuC2I CCSGG 2 cut(s) 103, 273
AsuHPI GGTGA 2 cut(s) 38, 287
AvaI CYCGRG 1 cut(s) 70
BanII GRGCYC 1 cut(s) 273
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 2 cut(s) 103, 273
BfaI CTAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 3 cut(s) 103, 273, 305
BmeT110I CYCGRG 1 cut(s) 70
BmrFI CCNGG 3 cut(s) 103, 273, 305
BmsI GCATC 2 cut(s) 184, 277
BplI GAGNNNNNCTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 103, 273
BsaJI CCNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 3 cut(s) 28, 199, 292
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 102, 273
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 3 cut(s) 31, 122, 149
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 89, 242, 320
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 3 cut(s) 28, 199, 292
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 3 cut(s) 101, 271, 303
BstUI CGCG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 3 cut(s) 28, 199, 292
CviAII CATG 2 cut(s) 158, 283
CviJI RGCY 3 cut(s) 125, 214, 271
CviKI_1 RGCY 3 cut(s) 125, 214, 271
DdeI CTNAG 3 cut(s) 89, 242, 320
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DraI TTTAAA 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 2 cut(s) 161, 286
FaiI YATR 6 cut(s) 159, 225, 263, 284, 300, 330
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 157, 282
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 35, 206, 299
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 125
HapII CCGG 2 cut(s) 102, 273
Hin1II CATG 2 cut(s) 161, 286
HinfI GANTC 2 cut(s) 68, 85
HpaII CCGG 2 cut(s) 102, 273
HphI GGTGA 2 cut(s) 38, 287
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 22, 245
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 157, 302
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 182, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 3 cut(s) 89, 242, 320
Hsp92II CATG 2 cut(s) 161, 286
Kzo9I GATC 1 cut(s) 96
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 5 cut(s) 115, 196, 286, 290, 317
LweI GCATC 2 cut(s) 184, 277
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 26, 275
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 5 cut(s) 151, 184, 230, 263, 266
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 4, 199, 241
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 2 cut(s) 77, 340
MspI CCGG 2 cut(s) 102, 273
MspR9I CCNGG 3 cut(s) 103, 273, 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 2 cut(s) 103, 273
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 161, 286
NmuCI GTSAC 2 cut(s) 26, 275
NsiI ATGCAT 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 101
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 303
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 77, 340
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 96
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 103, 273, 305
SduI GDGCHC 1 cut(s) 273
SetI ASST 1 cut(s) 321
SfaNI GCATC 2 cut(s) 184, 277
Sfr274I CTCGAG 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 70, 203
SmoI CTYRAG 2 cut(s) 70, 203
Sse9I AATT 1 cut(s) 56
SsiI CCGC 3 cut(s) 31, 122, 149
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 101, 271, 303
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 56
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 77, 340
Tru9I TTAA 2 cut(s) 77, 340
TseFI GTSAC 2 cut(s) 26, 275
Tsp45I GTSAC 2 cut(s) 26, 275
TspDTI ATGAA 3 cut(s) 17, 185, 271
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.