pycom15g02520

cytochrome P450

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
1555891 .. 1556484
594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02520.1

Sequence Viewer

Length: 594 bp
ATGGTGACATTGACGTGGGCAATATCGTTATTGCTGAACAACCCTCACGTTATGAAAAAAGCCCTAAACGAACTAGACACCAAAATCGGCAGACAAAGAGTTGTGAGTGAGGAAGATTTAAGCAACTTGGTCTACATCCAAGCTATTGTGAAGGAGACATTACGTTTATACCCAGTGGGACCATTATCAGGGCCGCGTGTATTCAATGAAGATTGCATCATTGCTGGCTACCCTATCCGAAAGGGTACCCGATTCCTCCCAAACCTCTGGAAGATCCAAATTGACCCGAAATTTTGGCCAGAGCCACTCGAGTTCAAGCCAGAGAGATTTCTTACCACGCACAAGGATGTTGATCTGAAGGGTCAACATTTTCAGTTTATTCCTTTTGGAAGTGGTAGAAGATCATGCCCTGGTTTGGCATTTGGCCTTCAAATGGTGCAATTTACATTGGCTAGTTTTCTACATGCGTTTGAAATCTCAAACCCGTCAAGTGCCCCAGTTGATATGACGGAGAGTTTTGGAATGACCAACGTTAAGGCAACTCCACTTAATGTTCTCATCAAACCTCGCTTATCTTCTGAACTTTATGGATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

198

Amino Acids

22.29

Weight (kDa)

9.12

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 177 1.1e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 196
AciI CCGC 1 cut(s) 194
AclI AACGTT 1 cut(s) 531
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 3 cut(s) 188, 415, 433
AgsI TTSAA 4 cut(s) 205, 316, 431, 473
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 3 cut(s) 191, 296, 424
ApoI RAATTY 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 179, 191
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 496
BalI TGGCCA 1 cut(s) 298
BanI GGYRCC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 2 cut(s) 74, 453
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 179, 191
BmiI GGNNCC 2 cut(s) 180, 247
BmrFI CCNGG 1 cut(s) 411
BmrI ACTGGG 2 cut(s) 167, 491
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 2 cut(s) 167, 491
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 415, 433
Bse1I ACTGG 2 cut(s) 173, 497
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 135, 352
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 188, 415, 433
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 173, 497
BseSI GKGCMC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 3 cut(s) 193, 298, 426
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 188, 415, 433
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 3 cut(s) 193, 298, 426
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 3 cut(s) 273, 352, 401
BspACI CCGC 1 cut(s) 194
BspANI GGCC 3 cut(s) 193, 298, 426
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 180, 247
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 2 cut(s) 173, 497
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 3 cut(s) 273, 352, 401
Bst2UI CCWGG 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 226
BstF5I GGATG 2 cut(s) 135, 352
BstFNI CGCG 1 cut(s) 196
BstKTI GATC 3 cut(s) 276, 355, 404
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 273, 352, 401
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 409
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 3 cut(s) 193, 298, 426
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 135, 352
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 179, 191
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 405, 464
CviJI RGCY 9 cut(s) 62, 143, 193, 228, 298, 304, 319, 426, 452
CviKI_1 RGCY 9 cut(s) 62, 143, 193, 228, 298, 304, 319, 426, 452
CviQI GTAC 1 cut(s) 246
DpnI GATC 3 cut(s) 275, 354, 403
DpnII GATC 3 cut(s) 273, 352, 401
EaeI YGGCCR 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 408, 467
FaiI YATR 6 cut(s) 53, 169, 406, 465, 506, 588
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 404, 463
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 2 cut(s) 122, 359
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 2 cut(s) 74, 453
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 3 cut(s) 193, 298, 426
Hin1II CATG 2 cut(s) 408, 467
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HinfI GANTC 1 cut(s) 252
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 133, 365
Hpy188I TCNGA 3 cut(s) 239, 357, 580
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 2 cut(s) 133, 365
HpyAV CCTTC 3 cut(s) 145, 352, 437
HpyCH4IV ACGT 4 cut(s) 14, 48, 163, 531
HpyCH4V TGCA 2 cut(s) 216, 439
HpySE526I ACGT 4 cut(s) 14, 48, 163, 531
Hsp92II CATG 2 cut(s) 408, 467
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 273, 352, 401
LpnPI CCDG 9 cut(s) 174, 186, 210, 253, 312, 333, 396, 423, 510
LweI GCATC 1 cut(s) 225
MaeI CTAG 2 cut(s) 74, 453
MaeII ACGT 4 cut(s) 14, 48, 163, 531
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 275, 354, 403
MboI GATC 3 cut(s) 273, 352, 401
MboII GAAGA 5 cut(s) 125, 221, 283, 411, 567
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 3 cut(s) 279, 290, 440
MluNI TGGCCA 1 cut(s) 298
MnlI CCTC 5 cut(s) 54, 103, 266, 275, 576
Mox20I TGGCCA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 298
MseI TTAA 3 cut(s) 119, 534, 549
MslI CAYNNNNRTG 2 cut(s) 13, 345
Msp20I TGGCCA 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 196
NdeII GATC 3 cut(s) 273, 352, 401
NlaIII CATG 2 cut(s) 408, 467
NlaIV GGNNCC 2 cut(s) 180, 247
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 308
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 180, 247
PspPI GGNCC 2 cut(s) 179, 191
PspXI VCTCGAGB 1 cut(s) 308
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 2 cut(s) 13, 345
SaqAI TTAA 3 cut(s) 119, 534, 549
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 3 cut(s) 273, 352, 401
Sau96I GGNCC 2 cut(s) 179, 191
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 496
SetI ASST 7 cut(s) 17, 51, 145, 166, 267, 534, 568
SfaNI GCATC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 13, 345
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 279, 290, 440
SsiI CCGC 1 cut(s) 194
SspMI CTAG 2 cut(s) 74, 453
StyD4I CCNGG 1 cut(s) 409
TaiI ACGT 4 cut(s) 17, 51, 166, 534
TaqI TCGA 1 cut(s) 309
TasI AATT 3 cut(s) 279, 290, 440
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 3 cut(s) 119, 534, 549
Tru9I TTAA 3 cut(s) 119, 534, 549
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 68, 222
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 74, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.