Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Forward (+)

40634300 .. 40636481

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1175200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGATTCTTTCCCTTATGCAAACTCTATCACTGCTGGTTTATTCACAATAATCATCGTGTCATATTACTTATCACGAAGATGGAGAGCTGCCAATCACAAGGGCAAATTGTCACCACCTGAAGCCAAGGGTGCATGGCCTATATTGGGTCACCTTCCTTTGTTAGGAGGCTCTACACCTCCTCACATAACTTTGGGAGCCATGGCGGACAAGTATGGACCCCTTTACACTATCCGCCTTGGCGTCTATCCGTCATTGGTGATAAGCAGCAGCGAGATCGCAAAAGAATGCTTCACAACCAATGACTTGAAAGTAAACTCGCGCCCAAAGATGGCAGTTGTCGACCACATTGGCTACAACTACGCCATGTTTGGGTTCGCACCATCTGGACCCTATTGGCGAGAAATTCGCAAGATCACCACCTTGGAGTTGCTCTCAAACCGGAGGGTTGAGCTGCTCAAGCACATTCGAGTCTCGGAAGTAACTACTTTCTTGAAAGAATTGCACGAAACTTGGAGTACAAGGAAAAAGCAGAGCTCGAAATCTGGAGTGGTGGTAGAGCTGAAGCAATGGTTTGGGGACATGTCGCTGAACGTGATTGTTAGAATGGTGGCCGGAAAGAGGTATTCAGTAGCTGCCGATGAGGATGAGAAGAAAGAAGCGCTCAGGGTTCAGAATGCATTGAGGGAGTTTTTTCACTTTGTGGGATTGTTTTTGGTGGGTGATGCGGTTCCTTATCTGCGGTGGTTGGATTTGGGTGGGCATGAGAAGGCAATGAAGAAAACTGCAAAGGAATTGGACGCCATTGTTGGAGAGTGGGTTGAAGAGCATAAGCAGAGGAGAGCAAAAGGTGGTGCAAAGGGAGAGCAGGACTTCATAGATGCGATGCTTTCTGTGCTTGATGGTGCAGACCTTGGCGGTTTTGATGCTGATACGATCAACAAAGCCACAAGCTTGAATATGATTGCAGGAGGTACCGATACCACCATGGTGACATTAACGTGGGCAATATCATTGTTGGTGAACAACCCTCACATTCTGAAGAGAGCCCTAAACGAACTGGACACGAAAATAGGCAGACAAAGAGTTGTGAGTGAAGAAGATATAAGCAACTTGGTCTACATCCAAGCTATTGGCCACGTGAATTCACTGAGGATTGCACCATTGCTGGGTGCCATATTTCGAAAGGGCACCCGGTTGATCATGAACCTCTGGAAGCTCCAAACAGACCCTAAAAATTGGCCCGATCCATTCGAGTTCAAGCCAGAGAGATTTCTTACCACCCATAAGGATGTTGATGTGAAGGGTCATCATTTTGAGTTGATTCCATTTGGAAGTGGTAGAAGAGCATGCCCTGGTTTGGCATTTGGCCTTCAAATTGTGCAATTTACATTGGCTAGCTTTCTACATGCGTTTGAAATCTCGAACCCATCTAGTGCACCAATTGATATGACGGAGAGTTTTGGGCTGACCAACGTGAAGGCTACTCCACTCAAAGTTCTTATCAAACCTCGCTTGTCTTTTGAATTATATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

513

Amino Acids

57.31

Weight (kDa)

9.37

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	40 - 491	1e-73	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	974
AccB1I	GGYRCC	3 cut(s)	974, 1172, 1190
AccI	GTMKAC	2 cut(s)	342, 1119
AccII	CGCG	1 cut(s)	322
AciI	CCGC	5 cut(s)	206, 235, 728, 742, 918
AclWI	GGATC	1 cut(s)	1241
AcoI	YGGCCR	2 cut(s)	612, 1135
AcsI	RAATTY	2 cut(s)	405, 1144
AcuI	CTGAAG	3 cut(s)	141, 584, 1061
AcvI	CACGTG	1 cut(s)	1141
AcyI	GRCGYC	2 cut(s)	243, 801
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	2 cut(s)	520, 976
AfeI	AGCGCT	1 cut(s)	663
AfiI	CCNNNNNNNGG	7 cut(s)	146, 164, 331, 372, 621, 1169, 1360
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	8 cut(s)	310, 496, 824, 958, 1261, 1376, 1418, 1526
AjnI	CCWGG	1 cut(s)	1354
AleI	CACNNNNGTG	1 cut(s)	989
AluBI	AGCT	9 cut(s)	89, 454, 537, 562, 635, 954, 1130, 1219, 1401
AluI	AGCT	9 cut(s)	89, 454, 537, 562, 635, 954, 1130, 1219, 1401
Alw21I	GWGCWC	2 cut(s)	539, 1441
Alw26I	GTCTC	1 cut(s)	478
Alw44I	GTGCAC	1 cut(s)	1437
AlwI	GGATC	1 cut(s)	1241
AlwNI	CAGNNNCTG	1 cut(s)	635
Aor51HI	AGCGCT	1 cut(s)	663
AoxI	GGCC	5 cut(s)	137, 612, 1135, 1241, 1369
ApaLI	GTGCAC	1 cut(s)	1437
ApeKI	GCWGC	5 cut(s)	89, 267, 270, 454, 635
ApoI	RAATTY	2 cut(s)	405, 1144
Asp718I	GGTACC	1 cut(s)	974
AspLEI	GCGC	2 cut(s)	324, 664
AspS9I	GGNCC	3 cut(s)	218, 389, 1242
AsuC2I	CCSGG	1 cut(s)	1195
AsuHPI	GGTGA	7 cut(s)	105, 143, 271, 409, 734, 1003, 1033
AsuII	TTCGAA	1 cut(s)	1183
AsuNHI	GCTAGC	1 cut(s)	1397
AvaII	GGWCC	2 cut(s)	218, 389
BaeGI	GKGCMC	2 cut(s)	1193, 1441
BalI	TGGCCA	1 cut(s)	1137
BanI	GGYRCC	3 cut(s)	974, 1172, 1190
BanII	GRGCYC	2 cut(s)	539, 1051
BbrPI	CACGTG	1 cut(s)	1141
Bbv12I	GWGCWC	2 cut(s)	539, 1441
BbvI	GCAGC	5 cut(s)	76, 279, 282, 441, 622
BccI	CCATC	5 cut(s)	75, 325, 391, 896, 1438
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	1356
BclI	TGATCA	1 cut(s)	1200
BcnI	CCSGG	1 cut(s)	1195
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	2 cut(s)	1398, 1434
BfoI	RGCGCY	1 cut(s)	665
BisI	GCNGC	5 cut(s)	90, 268, 271, 455, 636
BlsI	GCNGC	5 cut(s)	91, 269, 272, 456, 637
Bme1390I	CCNGG	2 cut(s)	1195, 1356
Bme18I	GGWCC	2 cut(s)	218, 389
BmgT120I	GGNCC	3 cut(s)	218, 389, 1242
BmiI	GGNNCC	7 cut(s)	199, 220, 391, 732, 976, 1174, 1192
BmrFI	CCNGG	2 cut(s)	1195, 1356
BmsI	GCATC	4 cut(s)	715, 871, 876, 916
BmtI	GCTAGC	1 cut(s)	1401
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	665
Bpu14I	TTCGAA	1 cut(s)	1183
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	1195
BsaAI	YACGTR	1 cut(s)	1141
BsaHI	GRCGYC	2 cut(s)	243, 801
BsaJI	CCNNGG	7 cut(s)	126, 201, 238, 423, 913, 987, 1354
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	4 cut(s)	540, 570, 804, 834
Bsc4I	CCNNNNNNNGG	7 cut(s)	146, 164, 331, 372, 621, 1169, 1360
Bse1I	ACTGG	1 cut(s)	1065
Bse3DI	GCAATG	3 cut(s)	575, 780, 1163
BseBI	CCWGG	1 cut(s)	1356
BseDI	CCNNGG	7 cut(s)	126, 201, 238, 423, 913, 987, 1354
BseGI	GGATG	3 cut(s)	652, 1122, 1297
BseLI	CCNNNNNNNGG	7 cut(s)	146, 164, 331, 372, 621, 1169, 1360
BseMI	GCAATG	3 cut(s)	575, 780, 1163
BseMII	CTCAG	2 cut(s)	679, 1142
BseNI	ACTGG	1 cut(s)	1065
BseRI	GAGGAG	2 cut(s)	171, 853
BseSI	GKGCMC	2 cut(s)	1193, 1441
BseXI	GCAGC	5 cut(s)	76, 279, 282, 441, 622
BseYI	CCCAGC	1 cut(s)	1168
BsgI	GTGCAG	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	5 cut(s)	139, 614, 1137, 1243, 1371
BshNI	GGYRCC	3 cut(s)	974, 1172, 1190
BsiHKAI	GWGCWC	2 cut(s)	539, 1441
BsiSI	CCGG	3 cut(s)	442, 615, 1195
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	7 cut(s)	146, 164, 331, 372, 621, 1169, 1360
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	2 cut(s)	293, 682
BsnI	GGCC	5 cut(s)	139, 614, 1137, 1243, 1371
Bsp119I	TTCGAA	1 cut(s)	1183
Bsp1286I	GDGCHC	4 cut(s)	539, 1051, 1193, 1441
Bsp143I	GATC	5 cut(s)	276, 414, 936, 1200, 1246
Bsp19I	CCATGG	2 cut(s)	201, 987
BspACI	CCGC	5 cut(s)	206, 235, 728, 742, 918
BspANI	GGCC	5 cut(s)	139, 614, 1137, 1243, 1371
BspCNI	CTCAG	2 cut(s)	678, 1143
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	7 cut(s)	199, 220, 391, 732, 976, 1174, 1192
BspOI	GCTAGC	1 cut(s)	1401
BspPI	GGATC	1 cut(s)	1241
BspQI	GCTCTTC	2 cut(s)	819, 1339
BspT104I	TTCGAA	1 cut(s)	1183
BspT107I	GGYRCC	3 cut(s)	974, 1172, 1190
BsrDI	GCAATG	3 cut(s)	575, 780, 1163
BsrI	ACTGG	1 cut(s)	1065
BssECI	CCNNGG	7 cut(s)	126, 201, 238, 423, 913, 987, 1354
BssMI	GATC	5 cut(s)	276, 414, 936, 1200, 1246
BssNI	GRCGYC	2 cut(s)	243, 801
BssT1I	CCWWGG	6 cut(s)	126, 201, 238, 423, 913, 987
Bst2UI	CCWGG	1 cut(s)	1356
Bst6I	CTCTTC	3 cut(s)	819, 1037, 1339
BstACI	GRCGYC	2 cut(s)	243, 801
BstBAI	YACGTR	1 cut(s)	1141
BstBI	TTCGAA	1 cut(s)	1183
BstC8I	GCNNGC	2 cut(s)	1351, 1399
BstDEI	CTNAG	2 cut(s)	665, 1151
BstDSI	CCRYGG	2 cut(s)	201, 987
BstEII	GGTNACC	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	652, 1122, 1297
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	2 cut(s)	324, 664
BstKTI	GATC	5 cut(s)	279, 417, 939, 1203, 1249
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	5 cut(s)	276, 414, 936, 1200, 1246
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 460, 895
BstNI	CCWGG	1 cut(s)	1356
BstNSI	RCATGY	3 cut(s)	586, 1353, 1412
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	1193, 1354
BstSLI	GKGCMC	2 cut(s)	1193, 1441
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	5 cut(s)	76, 279, 282, 441, 622
BstXI	CCANNNNNNTGG	1 cut(s)	1133
BsuRI	GGCC	5 cut(s)	139, 614, 1137, 1243, 1371
BtgI	CCRYGG	2 cut(s)	201, 987
BtgZI	GCGATG	1 cut(s)	899
BtsCI	GGATG	3 cut(s)	652, 1122, 1297
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 1148
Cac8I	GCNNGC	2 cut(s)	1351, 1399
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	1203
CfoI	GCGC	2 cut(s)	324, 664
Cfr13I	GGNCC	3 cut(s)	218, 389, 1242
CseI	GACGC	2 cut(s)	232, 809
Csp6I	GTAC	2 cut(s)	519, 975
CviAII	CATG	9 cut(s)	135, 202, 367, 583, 764, 988, 1204, 1350, 1409
CviQI	GTAC	2 cut(s)	519, 975
DdeI	CTNAG	2 cut(s)	665, 1151
DpnI	GATC	5 cut(s)	278, 416, 938, 1202, 1248
DpnII	GATC	5 cut(s)	276, 414, 936, 1200, 1246
DraIII	CACNNNGTG	1 cut(s)	703
EaeI	YGGCCR	2 cut(s)	612, 1135
Eam1104I	CTCTTC	3 cut(s)	819, 1037, 1339
EarI	CTCTTC	3 cut(s)	819, 1037, 1339
EciI	GGCGGA	2 cut(s)	221, 224
Ecl136II	GAGCTC	1 cut(s)	537
Eco130I	CCWWGG	6 cut(s)	126, 201, 238, 423, 913, 987
Eco24I	GRGCYC	2 cut(s)	539, 1051
Eco47I	GGWCC	2 cut(s)	218, 389
Eco47III	AGCGCT	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	141, 584, 1061
Eco72I	CACGTG	1 cut(s)	1141
Eco91I	GGTNACC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	537
EcoNI	CCTNNNNNAGG	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	1144
EcoRII	CCWGG	1 cut(s)	1354
EcoT14I	CCWWGG	6 cut(s)	126, 201, 238, 423, 913, 987
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	539, 1051
ErhI	CCWWGG	6 cut(s)	126, 201, 238, 423, 913, 987
FaeI	CATG	9 cut(s)	138, 205, 370, 586, 767, 991, 1207, 1353, 1412
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	9 cut(s)	134, 201, 366, 582, 763, 987, 1203, 1349, 1408
FbaI	TGATCA	1 cut(s)	1200
FblI	GTMKAC	2 cut(s)	342, 1119
Fnu4HI	GCNGC	5 cut(s)	90, 268, 271, 455, 636
FokI	GGATG	3 cut(s)	659, 1109, 1304
FriOI	GRGCYC	2 cut(s)	539, 1051
Fsp4HI	GCNGC	5 cut(s)	90, 268, 271, 455, 636
FspBI	CTAG	2 cut(s)	1398, 1434
GlaI	GCGC	2 cut(s)	323, 663
GluI	GCNGC	5 cut(s)	90, 268, 271, 455, 636
GsaI	CCCAGC	1 cut(s)	1172
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	5 cut(s)	139, 614, 1137, 1243, 1371
HapII	CCGG	3 cut(s)	442, 615, 1195
HgaI	GACGC	2 cut(s)	232, 809
HhaI	GCGC	2 cut(s)	324, 664
Hin1I	GRCGYC	2 cut(s)	243, 801
Hin1II	CATG	9 cut(s)	138, 205, 370, 586, 767, 991, 1207, 1353, 1412
Hin6I	GCGC	2 cut(s)	322, 662
HinP1I	GCGC	2 cut(s)	322, 662
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	3 cut(s)	5, 471, 1324
HpaII	CCGG	3 cut(s)	442, 615, 1195
HphI	GGTGA	7 cut(s)	105, 143, 271, 409, 734, 1003, 1033
Hpy166II	GTNNAC	5 cut(s)	316, 343, 1024, 1120, 1439
Hpy188I	TCNGA	3 cut(s)	478, 675, 1041
Hpy188III	TCNNGA	7 cut(s)	75, 387, 493, 546, 1204, 1213, 1423
Hpy8I	GTNNAC	5 cut(s)	316, 343, 1024, 1120, 1439
HpyAV	CCTTC	5 cut(s)	164, 763, 1297, 1382, 1474
HpyCH4IV	ACGT	4 cut(s)	594, 1001, 1140, 1476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 460, 895
HpyF3I	CTNAG	2 cut(s)	665, 1151
HpySE526I	ACGT	4 cut(s)	594, 1001, 1140, 1476
Hsp92I	GRCGYC	2 cut(s)	243, 801
Hsp92II	CATG	9 cut(s)	138, 205, 370, 586, 767, 991, 1207, 1353, 1412
HspAI	GCGC	2 cut(s)	322, 662
KpnI	GGTACC	1 cut(s)	978
Ksp22I	TGATCA	1 cut(s)	1200
Kzo9I	GATC	5 cut(s)	276, 414, 936, 1200, 1246
LguI	GCTCTTC	2 cut(s)	819, 1339
LmnI	GCTCC	2 cut(s)	197, 1224
Lsp1109I	GCAGC	5 cut(s)	76, 279, 282, 441, 622
LweI	GCATC	4 cut(s)	715, 871, 876, 916
MaeI	CTAG	2 cut(s)	1398, 1434
MaeII	ACGT	4 cut(s)	594, 1001, 1140, 1476
MaeIII	GTNAC	4 cut(s)	111, 149, 481, 991
MalI	GATC	5 cut(s)	278, 416, 938, 1202, 1248
MboI	GATC	5 cut(s)	276, 414, 936, 1200, 1246
MboII	GAAGA	8 cut(s)	90, 664, 790, 836, 1054, 1109, 1112, 1356
MfeI	CAATTG	1 cut(s)	1443
MhlI	GDGCHC	4 cut(s)	539, 1051, 1193, 1441
MlsI	TGGCCA	1 cut(s)	1137
MluNI	TGGCCA	1 cut(s)	1137
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	2 cut(s)	729, 790
Mox20I	TGGCCA	1 cut(s)	1137
Mph1103I	ATGCAT	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	1137
MseI	TTAA	1 cut(s)	998
MslI	CAYNNNNRTG	4 cut(s)	79, 989, 1000, 1290
Msp20I	TGGCCA	1 cut(s)	1137
MspI	CCGG	3 cut(s)	442, 615, 1195
MspR9I	CCNGG	2 cut(s)	1195, 1356
MunI	CAATTG	1 cut(s)	1443
Mva1269I	GAATGC	2 cut(s)	293, 682
MvaI	CCWGG	1 cut(s)	1356
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	131, 460, 895
NciI	CCSGG	1 cut(s)	1195
NcoI	CCATGG	2 cut(s)	201, 987
NdeII	GATC	5 cut(s)	276, 414, 936, 1200, 1246
NheI	GCTAGC	1 cut(s)	1397
NlaIII	CATG	9 cut(s)	138, 205, 370, 586, 767, 991, 1207, 1353, 1412
NlaIV	GGNNCC	7 cut(s)	199, 220, 391, 732, 976, 1174, 1192
NmuCI	GTSAC	3 cut(s)	111, 149, 991
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	3 cut(s)	586, 1353, 1412
NspV	TTCGAA	1 cut(s)	1183
OliI	CACNNNNGTG	1 cut(s)	989
PaeI	GCATGC	1 cut(s)	1353
PagI	TCATGA	1 cut(s)	1203
PciI	ACATGT	1 cut(s)	582
PciSI	GCTCTTC	2 cut(s)	819, 1339
PctI	GAATGC	2 cut(s)	293, 682
PfeI	GAWTC	2 cut(s)	5, 1324
PkrI	GCNGC	5 cut(s)	91, 269, 272, 456, 637
PleI	GAGTC	1 cut(s)	479
PmaCI	CACGTG	1 cut(s)	1141
PmlI	CACGTG	1 cut(s)	1141
PpsI	GAGTC	1 cut(s)	479
Ppu21I	YACGTR	1 cut(s)	1141
PscI	ACATGT	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	1354
PspCI	CACGTG	1 cut(s)	1141
PspEI	GGTNACC	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	1168
PspGI	CCWGG	1 cut(s)	1354
PspN4I	GGNNCC	7 cut(s)	199, 220, 391, 732, 976, 1174, 1192
PspPI	GGNCC	3 cut(s)	218, 389, 1242
PstNI	CAGNNNCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	520, 976
RsaNI	GTAC	2 cut(s)	519, 975
RseI	CAYNNNNRTG	4 cut(s)	79, 989, 1000, 1290
SacI	GAGCTC	1 cut(s)	539
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	2 cut(s)	819, 1339
SaqAI	TTAA	1 cut(s)	998
SatI	GCNGC	5 cut(s)	90, 268, 271, 455, 636
Sau3AI	GATC	5 cut(s)	276, 414, 936, 1200, 1246
Sau96I	GGNCC	3 cut(s)	218, 389, 1242
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	2 cut(s)	1195, 1356
SduI	GDGCHC	4 cut(s)	539, 1051, 1193, 1441
SfaNI	GCATC	4 cut(s)	715, 871, 876, 916
SfuI	TTCGAA	1 cut(s)	1183
SinI	GGWCC	2 cut(s)	218, 389
SmiMI	CAYNNNNRTG	4 cut(s)	79, 989, 1000, 1290
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	1353
SsiI	CCGC	5 cut(s)	206, 235, 728, 742, 918
SspMI	CTAG	2 cut(s)	1398, 1434
SstI	GAGCTC	1 cut(s)	539
StyD4I	CCNGG	2 cut(s)	1193, 1354
StyI	CCWWGG	6 cut(s)	126, 201, 238, 423, 913, 987
TaiI	ACGT	4 cut(s)	597, 1004, 1143, 1479
TaqI	TCGA	6 cut(s)	342, 469, 539, 1183, 1254, 1424
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	2 cut(s)	5, 1324
Tru1I	TTAA	1 cut(s)	998
Tru9I	TTAA	1 cut(s)	998
TscAI	CASTG	2 cut(s)	37, 1155
TseFI	GTSAC	3 cut(s)	111, 149, 991
TseI	GCWGC	5 cut(s)	89, 267, 270, 454, 635
Tsp45I	GTSAC	3 cut(s)	111, 149, 991
TspDTI	ATGAA	3 cut(s)	791, 865, 1220
TspGWI	ACGGA	2 cut(s)	240, 1469
TspRI	CASTG	2 cut(s)	37, 1155
VneI	GTGCAC	1 cut(s)	1437
VpaK11BI	GGWCC	2 cut(s)	218, 389
XagI	CCTNNNNNAGG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	405, 1144
XceI	RCATGY	3 cut(s)	586, 1353, 1412
XmiI	GTMKAC	2 cut(s)	342, 1119
XspI	CTAG	2 cut(s)	1398, 1434
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.