Rh5DG412300

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
65478017 .. 65496463
18447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG412300.1

Sequence Viewer

Length: 876 bp
ATGGAGAAACCCCCAATTTCAGCATCAAACCCGAAGATCAAAGAAACCAACTCTGGATTTCAATTCAAAGATAAGAGTATGGATGGAGAGTCATCTAAGCCGATGGTGGTGGGTCTGAATGGAGAGTCATCTGAGCTGGATAGCCTACGACCTGATTGGACGGTGGGGGTTCAGGCGATGAACCCGATGCAACTTGATTGGACGGTGGTGGTTCAGGCGATGAACCCGATGCAACCTGATTGGACGAATATGATTGTAGGAGGCAATGATACCACCACGATCACTTTGACATGGGCAATAGCATTACTGTTAAACAACTGTGAAAACTTGAAAAGAGCACAAGATGAAGTAGACACCGAGATAGGAAGAGAGAGATTTGTGAGTGAGTTGGACATGAGCAAGCTAGTCTATATCCAAGCCATAGTGAAAAAGACGCTTCAGTTATACCCAGCAGCACCATTATTAGCACCACATGAATTCGACAAGGACTGCACTATAGGTGGCTACTATGTCCCAAAGGGTACACGGTTGATCACAAAACTATGGAAGATTCAAAACGACCCAAAAATGTGGCTGGATGACCCATTAGGGTTCAAGGCAGAGAGATTTCAAACCACGAATAAGGATGTCAATGTTAGGGGCCAACACTTTGGGTTCATTCCATTTGAAAGTGGAAGAAGAGCATGCCCTGGACTATCTTTTGGTATTCAAATGGTGCACTTTACAGTGGCCAACTTCCTCCATGCCTTCCAAGTTTCAACTTTTTCCGATAATGCACCAATTGATGTGACTGAGAGTTTTGGGCTCACTAACATCAGGGCTACTCTACTTGCAGTTCTGATCGTGCCTTATTTGTCTTATAAGCTTTATAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

291

Amino Acids

32.72

Weight (kDa)

5.86

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 82 - 271 9.1e-49 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AccI GTMKAC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 523
AgsI TTSAA 9 cut(s) 62, 67, 331, 554, 595, 611, 668, 710, 759
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 3 cut(s) 136, 403, 865
AluI AGCT 3 cut(s) 136, 403, 865
Alw21I GWGCWC 2 cut(s) 340, 720
Alw44I GTGCAC 1 cut(s) 716
AoxI GGCC 2 cut(s) 640, 729
ApaLI GTGCAC 1 cut(s) 716
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 640
BaeGI GKGCMC 1 cut(s) 720
BalI TGGCCA 1 cut(s) 731
BanII GRGCYC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 340, 720
BbvI GCAGC 1 cut(s) 464
BccI CCATC 2 cut(s) 77, 97
BciT130I CCWGG 1 cut(s) 690
BclI TGATCA 1 cut(s) 531
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 641
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 3 cut(s) 32, 177, 219
BsaJI CCNNGG 1 cut(s) 688
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 3 cut(s) 88, 583, 631
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 123, 783
BseSI GKGCMC 1 cut(s) 720
BseXI GCAGC 1 cut(s) 464
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 475
BshFI GGCC 2 cut(s) 642, 731
BsiHKAI GWGCWC 2 cut(s) 340, 720
BslFI GGGAC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 2 cut(s) 642, 731
Bsp1286I GDGCHC 3 cut(s) 340, 720, 807
Bsp143I GATC 4 cut(s) 36, 279, 531, 840
BspANI GGCC 2 cut(s) 642, 731
BspCNI CTCAG 2 cut(s) 124, 784
BspLI GGNNCC 1 cut(s) 641
BspQI GCTCTTC 1 cut(s) 673
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 4 cut(s) 36, 279, 531, 840
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 6 cut(s) 163, 205, 309, 320, 528, 727
Bst6I CTCTTC 2 cut(s) 361, 673
BstC8I GCNNGC 2 cut(s) 401, 685
BstDEI CTNAG 3 cut(s) 96, 132, 792
BstF5I GGATG 3 cut(s) 88, 583, 631
BstKTI GATC 4 cut(s) 39, 282, 534, 843
BstMBI GATC 4 cut(s) 36, 279, 531, 840
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 688
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 464
BstXI CCANNNNNNTGG 2 cut(s) 570, 650
BsuRI GGCC 2 cut(s) 642, 731
BtgZI GCGATG 2 cut(s) 191, 233
BtsCI GGATG 3 cut(s) 88, 583, 631
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 2 cut(s) 401, 685
Cfr13I GGNCC 1 cut(s) 640
CseI GACGC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 522
CviAII CATG 5 cut(s) 291, 394, 473, 684, 743
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 3 cut(s) 96, 132, 792
DpnI GATC 4 cut(s) 38, 281, 533, 842
DpnII GATC 4 cut(s) 36, 279, 531, 840
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 361, 673
EarI CTCTTC 2 cut(s) 361, 673
Eco24I GRGCYC 1 cut(s) 807
Eco57I CTGAAG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 688
EcoT38I GRGCYC 1 cut(s) 807
FaeI CATG 5 cut(s) 294, 397, 476, 687, 746
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 290, 393, 472, 683, 742
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 3 cut(s) 95, 590, 638
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 404
GluI GCNGC 1 cut(s) 453
GsaI CCCAGC 1 cut(s) 452
HaeIII GGCC 2 cut(s) 642, 731
HgaI GACGC 1 cut(s) 442
Hin1II CATG 5 cut(s) 294, 397, 476, 687, 746
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 3 cut(s) 89, 125, 550
Hpy166II GTNNAC 3 cut(s) 352, 524, 718
Hpy188I TCNGA 4 cut(s) 117, 133, 769, 840
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 3 cut(s) 352, 524, 718
HpyAV CCTTC 1 cut(s) 757
HpyCH4III ACNGT 6 cut(s) 163, 205, 309, 320, 528, 727
HpyCH4V TGCA 6 cut(s) 190, 232, 492, 718, 776, 833
HpyF3I CTNAG 3 cut(s) 96, 132, 792
Hsp92II CATG 5 cut(s) 294, 397, 476, 687, 746
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 4 cut(s) 36, 279, 531, 840
LguI GCTCTTC 1 cut(s) 673
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 3 cut(s) 32, 177, 219
MaeI CTAG 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 787
MalI GATC 4 cut(s) 38, 281, 533, 842
MboI GATC 4 cut(s) 36, 279, 531, 840
MboII GAAGA 5 cut(s) 46, 378, 559, 687, 690
MfeI CAATTG 1 cut(s) 780
MhlI GDGCHC 3 cut(s) 340, 720, 807
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 4 cut(s) 15, 62, 476, 780
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 2 cut(s) 98, 134
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 2 cut(s) 254, 749
Mox20I TGGCCA 1 cut(s) 731
MscI TGGCCA 1 cut(s) 731
MseI TTAA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 1 cut(s) 690
NdeII GATC 4 cut(s) 36, 279, 531, 840
NlaIII CATG 5 cut(s) 294, 397, 476, 687, 746
NlaIV GGNNCC 1 cut(s) 641
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 687
PaeI GCATGC 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 673
PfeI GAWTC 1 cut(s) 550
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 2 cut(s) 97, 133
PpsI GAGTC 2 cut(s) 97, 133
PsiI TTATAA 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 641
PspPI GGNCC 1 cut(s) 640
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 673
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 4 cut(s) 36, 279, 531, 840
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 2 cut(s) 98, 134
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 3 cut(s) 340, 720, 807
SetI ASST 6 cut(s) 138, 154, 238, 405, 502, 867
SfaNI GCATC 3 cut(s) 32, 177, 219
SfcI CTRYAG 1 cut(s) 495
SphI GCATGC 1 cut(s) 687
Sse9I AATT 4 cut(s) 15, 62, 476, 780
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 688
TaaI ACNGT 6 cut(s) 163, 205, 309, 320, 528, 727
TaqI TCGA 1 cut(s) 480
TasI AATT 4 cut(s) 15, 62, 476, 780
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 5 cut(s) 194, 236, 360, 489, 646
TspRI CASTG 1 cut(s) 732
VneI GTGCAC 1 cut(s) 716
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 687
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.