Rroxscaffold_4G00296830

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
16850027 .. 16853273
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296830.1

Sequence Viewer

Length: 1017 bp
ATGTCATGTTCAGGATGGTTGTTGGAAAGCGATTTTCTGGGGCTAACTCGGCGAAAGAGAATTGAAGAGAATGAATGCTTTCGGAAGGCGTTGAGGGAATTTTTAAGATTGGGTGGCGAATTTGTAATCTCAGATGCAGTTCCATTTCTTAGGTGGTTGGATTGGGGAGGTTATGAGAAAGACATGAAGAAGACAGCTAAAGAACTCGATGGTGCGCTTCAAAAATGGTTAGAAGAGCATAAGCACAAGAGAAGTAGTAATTCTTTGCAACATAATTGTGAGCGTGACTTCATGGATATGATTTTTACCGTCCTTGTTGATGATAGCAGAGAAGAGTTTGCTGGTTCAATTACTGCTGATTCAATTATCAAAGCTACATGCCTGGCGGTTATTCTAGGAGGGACAGATACCTCAACAGTGACATTAACCTGGGCTCTTTCTTTATTACTCAACAATCCTGAAGTCCAGAAGAAGGCTCAACTTGAGTTAGACAACCATGATGGTAGGGAAAGGCAAGTGAACGAATCAGATGTGAAGAACCTAGTCTATCTCCAAGCCATTATCAAGGAAACCTTGCGGCTATACCCTGCTGCACCTCTCTCAGCACCACATGAATCCAGAGAAGACTGCAGAATAGGTAACTATCATGTAACCTCAGGCACGCGTCTTCTTATCAACCTTTCGAAGACTCATCGTGATCCAAATGTCTGGCTCGAGCCTTGTCTATTCCAACCAGAAAGGTTTCTTACAACTCACAAGAATGTTGATGTTCGGGGCCAGAGTTTTGAATTTATACCATTTGGAAGTGGTAGACGAATATGTCCAGGAATATCTCTAGCACTTCAAGTTACTCAACTTACACTGGCTCATTTGCTTCATGGGTTTGAAATTACAGCCCCATCTGATGAACCAGTTGATATGGGTGAGAGTTCAGGAATAACAAACATGAAGATAACCCCACTGGAGGTCTTTCTCAGCCCACGCCTACATCCTAAACTTTATGAAAATGTTGACTAG

Protein Analysis

338

Amino Acids

38.42

Weight (kDa)

5.82

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 313 2.5e-68 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 819
AccI GTMKAC 1 cut(s) 811
AccII CGCG 1 cut(s) 664
AciI CCGC 2 cut(s) 386, 577
AclWI GGATC 1 cut(s) 692
AcsI RAATTY 3 cut(s) 98, 119, 788
AcuI CTGAAG 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 472, 964
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 7 cut(s) 65, 221, 348, 363, 788, 845, 887
AjnI CCWGG 3 cut(s) 381, 428, 823
AluBI AGCT 2 cut(s) 197, 374
AluI AGCT 2 cut(s) 197, 374
AlwI GGATC 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 713
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 3 cut(s) 98, 119, 788
Asp700I GAANNNNTTC 2 cut(s) 78, 741
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 775
AsuHPI GGTGA 1 cut(s) 935
AsuII TTCGAA 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 713
AxyI CCTNAGG 1 cut(s) 655
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 4 cut(s) 197, 630, 659, 692
BbvI GCAGC 1 cut(s) 577
BccI CCATC 4 cut(s) 9, 203, 494, 907
BciT130I CCWGG 3 cut(s) 383, 430, 825
BfaI CTAG 4 cut(s) 395, 542, 836, 1015
BfmI CTRYAG 1 cut(s) 628
BisI GCNGC 2 cut(s) 578, 591
BlsI GCNGC 2 cut(s) 579, 592
Bme1390I CCNGG 3 cut(s) 383, 430, 825
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 1 cut(s) 775
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 3 cut(s) 383, 430, 825
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 4 cut(s) 197, 630, 659, 692
BpmI CTGGAG 1 cut(s) 983
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 429
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 964
Bse1I ACTGG 3 cut(s) 867, 911, 966
Bse21I CCTNAGG 1 cut(s) 655
BseBI CCWGG 3 cut(s) 383, 430, 825
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 20, 988
BseLI CCNNNNNNNGG 2 cut(s) 472, 964
BseMII CTCAG 4 cut(s) 144, 615, 669, 988
BseNI ACTGG 3 cut(s) 867, 911, 966
BseXI GCAGC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 576
Bsh1236I CGCG 1 cut(s) 664
BshFI GGCC 1 cut(s) 777
BsiHKCI CYCGRG 1 cut(s) 713
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 472, 964
BsmFI GGGAC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 777
BsoBI CYCGRG 1 cut(s) 713
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 697
BspACI CCGC 2 cut(s) 386, 577
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 4 cut(s) 143, 614, 668, 987
BspFNI CGCG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 776
BspMAI CTGCAG 1 cut(s) 632
BspPI GGATC 1 cut(s) 692
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 683
BsrI ACTGG 3 cut(s) 867, 911, 966
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 1 cut(s) 697
Bst2UI CCWGG 3 cut(s) 383, 430, 825
Bst4CI ACNGT 2 cut(s) 310, 418
Bst6I CTCTTC 3 cut(s) 60, 228, 327
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 5 cut(s) 130, 149, 601, 655, 974
BstF5I GGATG 2 cut(s) 20, 988
BstFNI CGCG 1 cut(s) 664
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 700
BstMBI GATC 1 cut(s) 697
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 3 cut(s) 383, 430, 825
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 3 cut(s) 381, 428, 823
BstSFI CTRYAG 1 cut(s) 628
BstUI CGCG 1 cut(s) 664
BstV1I GCAGC 1 cut(s) 577
BstV2I GAAGAC 4 cut(s) 197, 630, 659, 692
BstXI CCANNNNNNTGG 1 cut(s) 708
Bsu36I CCTNAGG 1 cut(s) 655
BsuRI GGCC 1 cut(s) 777
BtsCI GGATG 2 cut(s) 20, 988
BtsIMutI CAGTG 3 cut(s) 423, 860, 959
Cac8I GCNNGC 1 cut(s) 662
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 775
CseI GACGC 1 cut(s) 653
CviAII CATG 9 cut(s) 6, 184, 292, 378, 497, 611, 647, 878, 946
DdeI CTNAG 5 cut(s) 130, 149, 601, 655, 974
DpnI GATC 1 cut(s) 699
DpnII GATC 1 cut(s) 697
DrdI GACNNNNNNGTC 1 cut(s) 819
DseDI GACNNNNNNGTC 1 cut(s) 819
Eam1104I CTCTTC 3 cut(s) 60, 228, 327
EarI CTCTTC 3 cut(s) 60, 228, 327
Eco24I GRGCYC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 655
Eco88I CYCGRG 1 cut(s) 713
EcoRII CCWGG 3 cut(s) 381, 428, 823
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 9 cut(s) 9, 187, 295, 381, 500, 614, 650, 881, 949
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 1 cut(s) 415
FatI CATG 9 cut(s) 5, 183, 291, 377, 496, 610, 646, 877, 945
FblI GTMKAC 1 cut(s) 811
Fnu4HI GCNGC 2 cut(s) 578, 591
FokI GGATG 2 cut(s) 27, 975
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 2 cut(s) 578, 591
FspBI CTAG 4 cut(s) 395, 542, 836, 1015
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 578, 591
GsuI CTGGAG 1 cut(s) 983
HaeIII GGCC 1 cut(s) 777
HgaI GACGC 1 cut(s) 653
HhaI GCGC 1 cut(s) 217
Hin1II CATG 9 cut(s) 9, 187, 295, 381, 500, 614, 650, 881, 949
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HinfI GANTC 4 cut(s) 359, 524, 614, 688
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 3 cut(s) 520, 812, 1012
Hpy188I TCNGA 4 cut(s) 84, 133, 529, 904
Hpy188III TCNNGA 6 cut(s) 12, 458, 466, 618, 695, 933
Hpy8I GTNNAC 3 cut(s) 520, 812, 1012
HpyAV CCTTC 2 cut(s) 79, 466
HpyCH4III ACNGT 2 cut(s) 310, 418
HpyCH4V TGCA 4 cut(s) 137, 268, 593, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 5 cut(s) 130, 149, 601, 655, 974
Hsp92II CATG 9 cut(s) 9, 187, 295, 381, 500, 614, 650, 881, 949
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 697
LguI GCTCTTC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 1 cut(s) 124
MaeI CTAG 4 cut(s) 395, 542, 836, 1015
MaeIII GTNAC 5 cut(s) 284, 418, 638, 649, 847
MalI GATC 1 cut(s) 699
MboI GATC 1 cut(s) 697
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 9 cut(s) 60, 98, 119, 259, 274, 348, 363, 788, 888
MluI ACGCGT 1 cut(s) 662
MlyI GAGTC 1 cut(s) 682
MmeI TCCRAC 2 cut(s) 138, 754
MnlI CCTC 7 cut(s) 87, 161, 392, 421, 606, 664, 958
MroXI GAANNNNTTC 2 cut(s) 78, 741
MseI TTAA 2 cut(s) 104, 425
MslI CAYNNNNRTG 3 cut(s) 276, 296, 759
MspR9I CCNGG 3 cut(s) 383, 430, 825
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 3 cut(s) 383, 430, 825
MvnI CGCG 1 cut(s) 664
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 697
NlaIII CATG 9 cut(s) 9, 187, 295, 381, 500, 614, 650, 881, 949
NlaIV GGNNCC 1 cut(s) 776
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 284, 418
NspI RCATGY 1 cut(s) 381
NspV TTCGAA 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 713
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 78, 741
PfeI GAWTC 3 cut(s) 359, 524, 614
PfoI TCCNGGA 1 cut(s) 823
PkrI GCNGC 2 cut(s) 579, 592
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
Psp6I CCWGG 3 cut(s) 381, 428, 823
PspGI CCWGG 3 cut(s) 381, 428, 823
PspN4I GGNNCC 1 cut(s) 776
PspPI GGNCC 1 cut(s) 775
PspXI VCTCGAGB 1 cut(s) 713
PstI CTGCAG 1 cut(s) 632
RseI CAYNNNNRTG 3 cut(s) 276, 296, 759
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 104, 425
SatI GCNGC 2 cut(s) 578, 591
Sau3AI GATC 1 cut(s) 697
Sau96I GGNCC 1 cut(s) 775
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 3 cut(s) 383, 430, 825
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 628
Sfr274I CTCGAG 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 683
SlaI CTCGAG 1 cut(s) 713
SmiMI CAYNNNNRTG 3 cut(s) 276, 296, 759
SmlI CTYRAG 2 cut(s) 482, 713
SmoI CTYRAG 2 cut(s) 482, 713
Sse9I AATT 9 cut(s) 60, 98, 119, 259, 274, 348, 363, 788, 888
SsiI CCGC 2 cut(s) 386, 577
SspMI CTAG 4 cut(s) 395, 542, 836, 1015
StyD4I CCNGG 3 cut(s) 381, 428, 823
TaaI ACNGT 2 cut(s) 310, 418
TaqI TCGA 3 cut(s) 207, 683, 714
TasI AATT 9 cut(s) 60, 98, 119, 259, 274, 348, 363, 788, 888
TauI GCSGC 1 cut(s) 580
TfiI GAWTC 3 cut(s) 359, 524, 614
Tru1I TTAA 2 cut(s) 104, 425
Tru9I TTAA 2 cut(s) 104, 425
TscAI CASTG 3 cut(s) 423, 867, 966
TseFI GTSAC 2 cut(s) 284, 418
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 2 cut(s) 284, 418
TspDTI ATGAA 8 cut(s) 87, 200, 280, 627, 866, 921, 962, 1017
TspRI CASTG 3 cut(s) 423, 867, 966
XapI RAATTY 3 cut(s) 98, 119, 788
XceI RCATGY 1 cut(s) 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 811
XmnI GAANNNNTTC 2 cut(s) 78, 741
XspI CTAG 4 cut(s) 395, 542, 836, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.