Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014587.1

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

2224 .. 3545

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgcgttggcaggtgggctgggatcgagtggagaccgtcgggaaagatggggatcgtggactgagggcgctgggatctgcgtccggtctggctgggaggctgtgggtgctgggttgctatagcagaccgcttggtggtgtgcgtgcaggtgggaggtcggatcagtgcgctgtagtgctcggggataggcagagaagaccgcagccttcccacatagcatttggagccatggctgacaagtatggaccacttttctcggtacggcttggtgtctatcaaactttggtggtgagcagcagtgaggtagccaaggaatgttttgcaacccttgacttgagagcctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

9.8

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AciI	CCGC	2 cut(s)	128, 200
AclWI	GGATC	4 cut(s)	30, 60, 82, 168
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	4 cut(s)	30, 60, 82, 168
Ama87I	CYCGRG	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	202, 294
AspLEI	GCGC	2 cut(s)	70, 170
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	214, 306
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	346
BfmI	CTRYAG	2 cut(s)	118, 171
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	2 cut(s)	203, 295
BlsI	GCNGC	2 cut(s)	204, 296
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	228, 309
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	228, 309
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	214, 306
BseYI	CCCAGC	4 cut(s)	18, 70, 92, 109
BsgI	GTGCAG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	22, 52, 74, 160
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	2 cut(s)	128, 200
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	4 cut(s)	30, 60, 82, 168
BspTNI	GGTCTC	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	228, 309
BssMI	GATC	4 cut(s)	22, 52, 74, 160
BssT1I	CCWWGG	2 cut(s)	228, 309
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 170
BstKTI	GATC	4 cut(s)	25, 55, 77, 163
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	22, 52, 74, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 224
BstSFI	CTRYAG	2 cut(s)	118, 171
BstV1I	GCAGC	2 cut(s)	214, 306
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	170, 304
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	2 cut(s)	70, 170
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	9 cut(s)	18, 92, 100, 205, 227, 233, 265, 308, 341
CviKI_1	RGCY	9 cut(s)	18, 92, 100, 205, 227, 233, 265, 308, 341
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	4 cut(s)	24, 54, 76, 162
DpnII	GATC	4 cut(s)	22, 52, 74, 160
Eco130I	CCWWGG	2 cut(s)	228, 309
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	228, 309
ErhI	CCWWGG	2 cut(s)	228, 309
FaeI	CATG	1 cut(s)	232
FaiI	YATR	4 cut(s)	120, 215, 230, 243
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	203, 295
Fsp4HI	GCNGC	2 cut(s)	203, 295
FspBI	CTAG	1 cut(s)	346
GlaI	GCGC	2 cut(s)	69, 169
GluI	GCNGC	2 cut(s)	203, 295
GsaI	CCCAGC	4 cut(s)	22, 74, 96, 113
HaeII	RGCGCY	1 cut(s)	71
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	70, 170
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	2 cut(s)	68, 168
HinP1I	GCGC	2 cut(s)	68, 168
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	146, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 224
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	2 cut(s)	68, 168
Kzo9I	GATC	4 cut(s)	22, 52, 74, 160
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	7 cut(s)	4, 56, 74, 78, 95, 97, 132
Lsp1109I	GCAGC	2 cut(s)	214, 306
MaeI	CTAG	1 cut(s)	346
MalI	GATC	4 cut(s)	24, 54, 76, 162
MboI	GATC	4 cut(s)	22, 52, 74, 160
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	57, 90, 147, 295
MspI	CCGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	106, 224
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	22, 52, 74, 160
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	204, 296
PspFI	CCCAGC	4 cut(s)	18, 70, 92, 109
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SatI	GCNGC	2 cut(s)	203, 295
Sau3AI	GATC	4 cut(s)	22, 52, 74, 160
Sau96I	GGNCC	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	15, 151, 158, 306
SfcI	CTRYAG	2 cut(s)	118, 171
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
SsiI	CCGC	2 cut(s)	128, 200
SspMI	CTAG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	228, 309
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	25
TscAI	CASTG	2 cut(s)	170, 304
TseI	GCWGC	2 cut(s)	202, 294
TspRI	CASTG	2 cut(s)	170, 304
VpaK11BI	GGWCC	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.