Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034954.1

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1750

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034954.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgattgtaggaggcaatgataccaccacgatcactttgacatgggcaatagcattactgttaaacaactgtgaaaacttgaaaagagcgcaagatgaagtagacaccgagataggaagagagagatttgtgagtgagttggacatgagcaagctagtctatatccaagccatagtgaaaaagacgcttcagttatacccagcagcaccattattagcaccacatgaattcgacaaggactgcactataggtggctactatgtcccaaagggtacacggagtttcggagctttcttcgcaataagcatcgtacgcagtggagcttttctccggctgcaacagacactcggtcctgaccaatgctccggcatcaatcgcttcatcgctagcttcactattccctctctctccttccacttcatctccagttgtggtgaagagactcaacatcaaaagcttgagtttgatttggaggagttggagcgcacggtggagcacacggtgtttgttttcggcagcggaggaaccgacctcaatcaccgggaccggtccctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

185

Amino Acids

20.67

Weight (kDa)

5.35

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	2 cut(s)	274, 312
AgeI	ACCGGT	1 cut(s)	546
AgsI	TTSAA	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	348
AluBI	AGCT	5 cut(s)	154, 290, 323, 390, 457
AluI	AGCT	5 cut(s)	154, 290, 323, 390, 457
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	434
ApeKI	GCWGC	3 cut(s)	203, 334, 516
ApoI	RAATTY	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	546
AspLEI	GCGC	2 cut(s)	91, 486
AspS9I	GGNCC	3 cut(s)	350, 544, 549
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	446, 530
AsuNHI	GCTAGC	1 cut(s)	386
AvaII	GGWCC	3 cut(s)	350, 544, 549
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	215, 321, 528
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	2 cut(s)	155, 387
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	3 cut(s)	204, 335, 517
BlsI	GCNGC	3 cut(s)	205, 336, 518
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	3 cut(s)	350, 544, 549
BmeRI	GACNNNNNGTC	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	350, 544, 549
BmiI	GGNNCC	3 cut(s)	526, 545, 551
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	315, 378
BmtI	GCTAGC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	542
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 407, 437
Bse118I	RCCGGY	1 cut(s)	546
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	215, 321, 528
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	4 cut(s)	331, 366, 541, 547
BsiWI	CGTACG	1 cut(s)	310
BslFI	GGGAC	2 cut(s)	248, 535
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	248, 535
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	526, 545, 551
BspOI	GCTAGC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	546
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	60, 71, 490, 502
Bst6I	CTCTTC	2 cut(s)	112, 432
BstC8I	GCNNGC	2 cut(s)	152, 388
BstHHI	GCGC	2 cut(s)	91, 486
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 312, 375
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	215, 321, 528
BtgZI	GCGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	152, 388
CfoI	GCGC	2 cut(s)	91, 486
Cfr10I	RCCGGY	1 cut(s)	546
Cfr13I	GGNCC	3 cut(s)	350, 544, 549
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	273, 311
CspAI	ACCGGT	1 cut(s)	546
CviAII	CATG	3 cut(s)	42, 145, 224
CviJI	RGCY	8 cut(s)	154, 170, 255, 290, 323, 334, 390, 457
CviKI_1	RGCY	8 cut(s)	154, 170, 255, 290, 323, 334, 390, 457
CviQI	GTAC	2 cut(s)	273, 311
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraIII	CACNNNGTG	1 cut(s)	502
DriI	GACNNNNNGTC	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	112, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	348
EarI	CTCTTC	2 cut(s)	112, 432
Eco47I	GGWCC	3 cut(s)	350, 544, 549
Eco57I	CTGAAG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	45, 148, 227
FaiI	YATR	8 cut(s)	43, 146, 162, 173, 196, 225, 248, 261
FaqI	GGGAC	2 cut(s)	248, 535
FatI	CATG	3 cut(s)	41, 144, 223
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	204, 335, 517
Fsp4HI	GCNGC	3 cut(s)	204, 335, 517
FspBI	CTAG	2 cut(s)	155, 387
GlaI	GCGC	2 cut(s)	90, 485
GluI	GCNGC	3 cut(s)	204, 335, 517
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	409
HapII	CCGG	4 cut(s)	331, 366, 541, 547
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	91, 486
Hin1II	CATG	3 cut(s)	45, 148, 227
Hin6I	GCGC	2 cut(s)	89, 484
HinP1I	GCGC	2 cut(s)	89, 484
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	442
HpaII	CCGG	4 cut(s)	331, 366, 541, 547
HphI	GGTGA	2 cut(s)	446, 530
Hpy166II	GTNNAC	2 cut(s)	103, 275
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	103, 275
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	4 cut(s)	60, 71, 490, 502
HpyCH4V	TGCA	2 cut(s)	243, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 312, 375
Hsp92II	CATG	3 cut(s)	45, 148, 227
HspAI	GCGC	2 cut(s)	89, 484
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	5 cut(s)	287, 320, 368, 481, 493
LpnPI	CCDG	5 cut(s)	213, 344, 366, 379, 439
Lsp1109I	GCAGC	3 cut(s)	215, 321, 528
LweI	GCATC	2 cut(s)	315, 378
MaeI	CTAG	2 cut(s)	155, 387
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	129, 286, 449
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	120, 459
MnlI	CCTC	5 cut(s)	5, 412, 466, 515, 542
MseI	TTAA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	4 cut(s)	331, 366, 541, 547
MspR9I	CCNGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	296, 312, 375
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	1 cut(s)	30
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	3 cut(s)	45, 148, 227
NlaIV	GGNNCC	3 cut(s)	526, 545, 551
Pfl23II	CGTACG	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	205, 336, 518
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	199
PspLI	CGTACG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	526, 545, 551
PspPI	GGNCC	3 cut(s)	350, 544, 549
RsaI	GTAC	2 cut(s)	274, 312
RsaNI	GTAC	2 cut(s)	273, 311
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	3 cut(s)	204, 335, 517
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	3 cut(s)	350, 544, 549
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	7 cut(s)	156, 253, 292, 325, 392, 459, 534
SfaNI	GCATC	2 cut(s)	315, 378
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	3 cut(s)	350, 544, 549
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	2 cut(s)	155, 387
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	4 cut(s)	60, 71, 490, 502
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	3 cut(s)	203, 334, 516
TspDTI	ATGAA	4 cut(s)	111, 240, 370, 409
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	3 cut(s)	350, 544, 549
XapI	RAATTY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	155, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.