Rroxscaffold_1G00021460

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
26332519 .. 26341423
8905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021460.1

Sequence Viewer

Length: 285 bp
ATGCCCTGGACTAGATTTCGGCATTCAAATGGTGCAATTTACATTGGCCAGCTTCTTACATGCGTTCCAAGTTTCGACTCTCTCGATAATGCACCAATTGATATGGCCGAGAGTGATGGGCTCACAAACGTCAAAGCTACTCCACTTGAAGTTCTCATCAAACCTCATTTATCTCATAAACTTTACGGTGATGACATCAAACAACAAAATGGAAATCAAGCTCCTCATATAAAGAATACCGAAGACCAAGACAAACAAATGGAAAACCAACAAAAAGATCAATGA

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

5.38

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 46, 105
AgsI TTSAA 2 cut(s) 27, 149
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 3 cut(s) 52, 137, 221
AluI AGCT 3 cut(s) 52, 137, 221
AoxI GGCC 2 cut(s) 46, 105
AsuHPI GGTGA 1 cut(s) 200
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 249
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 5
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 213
BshFI GGCC 2 cut(s) 48, 107
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 48, 107
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 277
BspANI GGCC 2 cut(s) 48, 107
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 5
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 48, 107
Cac8I GCNNGC 1 cut(s) 50
CviAII CATG 1 cut(s) 60
CviJI RGCY 6 cut(s) 48, 52, 107, 121, 137, 221
CviKI_1 RGCY 6 cut(s) 48, 52, 107, 121, 137, 221
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EaeI YGGCCR 2 cut(s) 46, 105
Eco24I GRGCYC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 1 cut(s) 63
FaiI YATR 5 cut(s) 61, 104, 177, 228, 230
FatI CATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 123
FspBI CTAG 1 cut(s) 12
HaeIII GGCC 2 cut(s) 48, 107
Hin1II CATG 1 cut(s) 63
HinfI GANTC 1 cut(s) 77
HphI GGTGA 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 35, 92
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 63
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 2 cut(s) 19, 62
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 129
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 254
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 2 cut(s) 36, 96
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 174, 234
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 7
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 63
NmeAIII GCCGAG 1 cut(s) 133
NspI RCATGY 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 27
Sau3AI GATC 1 cut(s) 277
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 123
SetI ASST 5 cut(s) 54, 132, 139, 166, 223
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 2 cut(s) 36, 96
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 75, 84
TasI AATT 2 cut(s) 36, 96
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.