Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

60389600 .. 60390571

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATCTTTACCATTATCTTAGGAGGTATAGATACTATAACTGGGACATTGACATGGATTCTGACTTTACTTCTCAACAACCGCGGAGTGCTAAAGACGGCTCAACAAGAGTTAGATAAACATGTTGGTAGAGAGAGGCAAGTCAAGGAATCAGACACTGAAAACTTGGTTTATCTCCAAGCCGTTATCAAAGAAACCCTACGCTTATACCCTCCTGGACCAATCCCAAGGCCTGATCACGAGTCCACGGAAGACTGCGTCGTCGGCGGCTACCATATCCCAGCAAAAACTCGCCTCGTGATAAATATTTCCAAGATTCAACGTGATCCGAAGGTGTGGCCTGACCCGAGTGGGTTTCGACCTGAGAGGTTTCTCACAACTCACAAGAGCGTTGATGTCAGAGGTCAGGATTTTGAGTTGATACCCTTCAGCAGTGGTAGAAGAATTTGTCCTGGAATGTATCTTGCCCTAAAGAGTATGCCTCTTCTACTCGCTTCTTTGCTTCATGGTTTTGAACTTTCGACCCTAGGGGATGAGCCGGTTGACATGAGTGAGGCAGGGGGACTGACCAACCATAAAGCTGGCAAAGTTGAAGTCTTTCTCACTCCACGCCTTCCCGCTCGACTCTATGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko00981 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map00981 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

212

Amino Acids

23.75

Weight (kDa)

7.06

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 193	8.3e-59	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	620
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	82, 84, 267, 618
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	320, 515, 593
AjnI	CCWGG	2 cut(s)	214, 451
AluBI	AGCT	1 cut(s)	581
AluI	AGCT	1 cut(s)	581
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	2 cut(s)	230, 338
ApoI	RAATTY	1 cut(s)	444
ArsI	GACNNNNNNTTYG	2 cut(s)	579, 611
Asp700I	GAANNNNTTC	1 cut(s)	597
AspA2I	CCTAGG	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	218
AvrII	CCTAGG	1 cut(s)	526
BauI	CACGAG	2 cut(s)	239, 296
BbsI	GAAGAC	1 cut(s)	258
BceAI	ACGGC	2 cut(s)	114, 167
BciT130I	CCWGG	2 cut(s)	216, 453
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	1 cut(s)	527
BisI	GCNGC	1 cut(s)	268
BlnI	CCTAGG	1 cut(s)	526
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	216, 453
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	216, 453
BmrI	ACTGGG	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BsaJI	CCNNGG	4 cut(s)	82, 227, 246, 526
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	216, 453
BseDI	CCNNGG	4 cut(s)	82, 227, 246, 526
BseGI	GGATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	232, 340
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	58, 576
BsmFI	GGGAC	2 cut(s)	58, 576
BsnI	GGCC	2 cut(s)	232, 340
BsoBI	CYCGRG	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	3, 235, 325
BspACI	CCGC	4 cut(s)	82, 84, 267, 618
BspANI	GGCC	2 cut(s)	232, 340
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	4 cut(s)	82, 227, 246, 526
BssMI	GATC	3 cut(s)	3, 235, 325
BssSI	CACGAG	2 cut(s)	239, 296
BssT1I	CCWWGG	2 cut(s)	227, 526
Bst2BI	CACGAG	2 cut(s)	239, 296
Bst2UI	CCWGG	2 cut(s)	216, 453
Bst6I	CTCTTC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	19, 363
BstDSI	CCRYGG	2 cut(s)	82, 246
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	6, 238, 328
BstMBI	GATC	3 cut(s)	3, 235, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	2 cut(s)	216, 453
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	214, 451
BstUI	CGCG	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	232, 340
BtgI	CCRYGG	2 cut(s)	82, 246
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	156, 439
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	218
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	247
CviAII	CATG	4 cut(s)	54, 122, 506, 547
CviJI	RGCY	7 cut(s)	101, 182, 232, 270, 340, 538, 581
CviKI_1	RGCY	7 cut(s)	101, 182, 232, 270, 340, 538, 581
DdeI	CTNAG	2 cut(s)	19, 363
DpnI	GATC	3 cut(s)	5, 237, 327
DpnII	GATC	3 cut(s)	3, 235, 325
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	227, 526
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	214, 451
EcoT14I	CCWWGG	2 cut(s)	227, 526
ErhI	CCWWGG	2 cut(s)	227, 526
FaeI	CATG	4 cut(s)	57, 125, 509, 550
FaqI	GGGAC	2 cut(s)	58, 576
FatI	CATG	4 cut(s)	53, 121, 505, 546
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	1 cut(s)	268
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	232, 340
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	57, 125, 509, 550
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	5 cut(s)	58, 149, 242, 316, 624
HpaII	CCGG	1 cut(s)	539
Hpy166II	GTNNAC	2 cut(s)	246, 544
Hpy188I	TCNGA	4 cut(s)	63, 154, 330, 401
Hpy188III	TCNNGA	3 cut(s)	239, 298, 407
Hpy8I	GTNNAC	2 cut(s)	246, 544
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	3 cut(s)	325, 436, 623
HpyCH4IV	ACGT	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	19, 363
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	57, 125, 509, 550
Ksp22I	TGATCA	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	3, 235, 325
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	322
MalI	GATC	3 cut(s)	5, 237, 327
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	3 cut(s)	3, 235, 325
MboII	GAAGA	3 cut(s)	263, 453, 476
MluCI	AATT	1 cut(s)	444
MlyI	GAGTC	2 cut(s)	251, 618
MnlI	CCTC	8 cut(s)	17, 129, 222, 305, 360, 395, 492, 547
MroXI	GAANNNNTTC	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	216, 453
MvaI	CCWGG	2 cut(s)	216, 453
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	3 cut(s)	3, 235, 325
NlaIII	CATG	4 cut(s)	57, 125, 509, 550
NspI	RCATGY	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	232
PciI	ACATGT	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	58, 149, 316
PflFI	GACNNNGTC	1 cut(s)	257
PfoI	TCCNGGA	2 cut(s)	214, 451
PkrI	GCNGC	1 cut(s)	269
PleI	GAGTC	2 cut(s)	250, 618
PpsI	GAGTC	2 cut(s)	250, 618
PscI	ACATGT	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	214, 451
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	214, 451
PspPI	GGNCC	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	52
SacII	CCGCGG	1 cut(s)	85
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	3 cut(s)	3, 235, 325
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	2 cut(s)	251, 618
ScrFI	CCNGG	2 cut(s)	216, 453
SetI	ASST	7 cut(s)	28, 325, 336, 364, 371, 406, 583
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	444
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	4 cut(s)	82, 84, 267, 618
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	214, 451
StyI	CCWWGG	2 cut(s)	227, 526
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	358, 521, 622
TasI	AATT	1 cut(s)	444
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	58, 149, 316
TscAI	CASTG	2 cut(s)	163, 439
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	163, 439
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	444
XceI	RCATGY	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.