Rroxscaffold_7G00168080

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000137
Physical Location & Seq
Reverse (-)
9003456 .. 9003999
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168080.1

Sequence Viewer

Length: 483 bp
ATGGTTAAAAAGTATGGATCCCTTTTTGCTGTAAAGCTTGGGGTGTATCCGACTTTGGTAGTGAGTAGTAGTCAAGTAGCTAAGGAGTGCTTTGCTATCAATGACATGGCCGCGTCCTCACTCCCAAAGATGGCAGCTGTAGAAATCATAGGCTACAACTATGCCATGTTTGGGTTTAGACCCTCCGGTTCATATTGGCGTGAAGTTCGTAAGAGTGCGACCTTGGAGTTGCTCTCCAACCGCCGGCTTCAGATTCTTAGACACGTTCGAGTATGTGAAGTGCGCACCTTCTTGAATCAATTGTACACAACTTGGAGTACTAGTCTTATGAAAAAGAAGGGAAACTCGGATGGGAAGCGATATTCTGTTGCGACCAATGAGGATGAGAAGAAAGAAGCGTGTAGTGTCCAGACTGCCTTGAGGGAGTTCTTCTATTTTGCAGGGCTGTTTGCGGTGGGTGATGCGATTCCTTATCTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

160

Amino Acids

18.1

Weight (kDa)

9.65

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 104 3.2e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 111, 241, 452
AclWI GGATC 2 cut(s) 12, 25
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 2 cut(s) 305, 319
AfiI CCNNNNNNNGG 3 cut(s) 130, 171, 243
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 295
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 3 cut(s) 37, 80, 137
AluI AGCT 3 cut(s) 37, 80, 137
AlwI GGATC 2 cut(s) 12, 25
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 470
BamHI GGATCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 124, 344
BciVI GTATCC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 138
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 2 cut(s) 111, 135
BlsI GCNGC 2 cut(s) 112, 136
BmcAI AGTACT 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 218, 250
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 171, 243
Bse118I RCCGGY 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 355, 388
BseLI CCNNNNNNNGG 3 cut(s) 130, 171, 243
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 186, 244
BslI CCNNNNNNNGG 3 cut(s) 130, 171, 243
BsnI GGCC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 3 cut(s) 111, 241, 452
BspANI GGCC 1 cut(s) 110
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 12, 25
BsrFI RCCGGY 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 81, 257
BstF5I GGATG 2 cut(s) 355, 388
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 355, 388
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 243
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 304, 318
CviAII CATG 2 cut(s) 106, 166
CviJI RGCY 7 cut(s) 37, 80, 110, 137, 153, 247, 445
CviKI_1 RGCY 7 cut(s) 37, 80, 110, 137, 153, 247, 445
CviQI GTAC 2 cut(s) 304, 318
DdeI CTNAG 2 cut(s) 81, 257
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 109, 169
FaiI YATR 8 cut(s) 15, 107, 149, 162, 167, 193, 274, 329
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 2 cut(s) 105, 165
Fnu4HI GCNGC 2 cut(s) 111, 135
FokI GGATG 2 cut(s) 362, 395
Fsp4HI GCNGC 2 cut(s) 111, 135
FspAI RTGCGCAY 1 cut(s) 284
FspBI CTAG 1 cut(s) 321
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 111, 135
HaeIII GGCC 1 cut(s) 110
HapII CCGG 2 cut(s) 186, 244
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 109, 169
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 253, 295, 466
HpaII CCGG 2 cut(s) 186, 244
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 3 cut(s) 51, 252, 349
Hpy188III TCNNGA 2 cut(s) 292, 409
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 298, 331
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 81, 257
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 109, 169
HspAI GCGC 1 cut(s) 283
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 199, 257, 422, 426
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 264
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 400, 421, 467
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 17
MluCI AATT 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 74, 261
MnlI CCTC 4 cut(s) 127, 193, 373, 414
MroNI GCCGGC 1 cut(s) 243
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 186, 244
MunI CAATTG 1 cut(s) 299
MvnI CGCG 1 cut(s) 113
NaeI GCCGGC 1 cut(s) 245
NdeII GATC 1 cut(s) 17
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 2 cut(s) 109, 169
NlaIV GGNNCC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 253, 295, 466
PkrI GCNGC 2 cut(s) 112, 136
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 305, 319
RsaNI GTAC 2 cut(s) 304, 318
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 111, 135
Sau3AI GATC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 319
SetI ASST 6 cut(s) 39, 82, 139, 224, 267, 290
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 1 cut(s) 299
SsiI CCGC 3 cut(s) 111, 241, 452
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 299
TatI WGTACW 2 cut(s) 303, 317
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 253, 295, 466
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 180, 344
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.