Rmu_sc0009050.1_g000008

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009050.1
OG0000137
Physical Location & Seq
Forward (+)
28564 .. 29190
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009050.1_g000008.1.cds

Sequence Viewer

Length: 627 bp
atgattgtaggaggcaatgataccaccacgatcactttgacatgggcaatagcattactgttaaacaactgtgaaaacttgaaaagagcgcaagatgaagtagacaccgagataggaagagagagatttgtgagtgagttggacatgagcaagctagtctatatccaagccatagtgaaagagacgcttcggttatacccagcagcaccattattagcaccacatgaattcgacaaggactgcactataggtggctactatgtcccaaagggtacacggttgatcacaaaactatggaagattcaaaccgacccaaaaatgtggctggatgacccattagggttcaaggcagagagatttcaaaccaccaataaggatgtcaatgttaggggccaacactttgggttcattccatttgaaagtggaagaagagcatgccctggactatcttttggtattcaaatggtgcactttacagtggccaacttcctccatgccttccaagtttcaactttttccgataatgcaccaattgatgtgactgagagttttgggctcactaacatcagggctactctacttgcagttctgatcgtgccttatttgtcttataagctttatagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

208

Amino Acids

23.54

Weight (kDa)

6.9

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccI GTMKAC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 1 cut(s) 274
AgsI TTSAA 7 cut(s) 82, 305, 346, 362, 419, 461, 510
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 2 cut(s) 154, 616
AluI AGCT 2 cut(s) 154, 616
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 467
AoxI GGCC 2 cut(s) 391, 480
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 471
BalI TGGCCA 1 cut(s) 482
BanII GRGCYC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 441
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 334, 382
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 2 cut(s) 393, 482
BsiHKAI GWGCWC 1 cut(s) 471
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 393, 482
Bsp1286I GDGCHC 2 cut(s) 471, 558
Bsp143I GATC 3 cut(s) 30, 282, 591
BspANI GGCC 2 cut(s) 393, 482
BspCNI CTCAG 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 392
BspQI GCTCTTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 3 cut(s) 30, 282, 591
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 60, 71, 279, 478
Bst6I CTCTTC 2 cut(s) 112, 424
BstC8I GCNNGC 2 cut(s) 152, 436
BstDEI CTNAG 1 cut(s) 543
BstF5I GGATG 2 cut(s) 334, 382
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 3 cut(s) 33, 285, 594
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 30, 282, 591
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 215
BstXI CCANNNNNNTGG 2 cut(s) 321, 401
BsuRI GGCC 2 cut(s) 393, 482
BtsCI GGATG 2 cut(s) 334, 382
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 152, 436
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 273
CviAII CATG 5 cut(s) 42, 145, 224, 435, 494
CviJI RGCY 9 cut(s) 154, 170, 255, 325, 393, 482, 556, 572, 616
CviKI_1 RGCY 9 cut(s) 154, 170, 255, 325, 393, 482, 556, 572, 616
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 543
DpnI GATC 3 cut(s) 32, 284, 593
DpnII GATC 3 cut(s) 30, 282, 591
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 112, 424
EarI CTCTTC 2 cut(s) 112, 424
Eco24I GRGCYC 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 558
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 5 cut(s) 45, 148, 227, 438, 497
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 41, 144, 223, 434, 493
FbaI TGATCA 1 cut(s) 282
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 341, 389
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 203
HaeIII GGCC 2 cut(s) 393, 482
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 91
Hin1II CATG 5 cut(s) 45, 148, 227, 438, 497
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 1 cut(s) 301
Hpy166II GTNNAC 3 cut(s) 103, 275, 469
Hpy188I TCNGA 2 cut(s) 520, 591
Hpy8I GTNNAC 3 cut(s) 103, 275, 469
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 4 cut(s) 60, 71, 279, 478
HpyCH4V TGCA 4 cut(s) 243, 469, 527, 584
HpyF3I CTNAG 1 cut(s) 543
Hsp92II CATG 5 cut(s) 45, 148, 227, 438, 497
HspAI GCGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 30, 282, 591
LguI GCTCTTC 1 cut(s) 424
LpnPI CCDG 5 cut(s) 213, 311, 426, 453, 553
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 538
MalI GATC 3 cut(s) 32, 284, 593
MboI GATC 3 cut(s) 30, 282, 591
MboII GAAGA 4 cut(s) 129, 310, 438, 441
MfeI CAATTG 1 cut(s) 531
MhlI GDGCHC 2 cut(s) 471, 558
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 2 cut(s) 227, 531
MluNI TGGCCA 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 5, 500
Mox20I TGGCCA 1 cut(s) 482
MscI TGGCCA 1 cut(s) 482
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 441
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 1 cut(s) 441
NdeII GATC 3 cut(s) 30, 282, 591
NlaIII CATG 5 cut(s) 45, 148, 227, 438, 497
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 538
NspI RCATGY 1 cut(s) 438
PaeI GCATGC 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 424
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 205
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 391
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 3 cut(s) 30, 282, 591
Sau96I GGNCC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 2 cut(s) 471, 558
SetI ASST 3 cut(s) 156, 253, 618
SfcI CTRYAG 1 cut(s) 246
SphI GCATGC 1 cut(s) 438
Sse9I AATT 2 cut(s) 227, 531
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 4 cut(s) 60, 71, 279, 478
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 227, 531
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 3 cut(s) 111, 240, 397
TspRI CASTG 1 cut(s) 483
VneI GTGCAC 1 cut(s) 467
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.