RchiOBHm_Chr2g0107671

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000137
Physical Location & Seq
Reverse (-)
19208951 .. 19209274
324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48169

Sequence Viewer

Length: 324 bp
ATGATCAACAAGACAGAGGGCAGCTGTGATGGTGATCGAGTAGTGTTGGTGGAGTTGAAACAAATGCTTGGGGACTTGACTCTCAATGTGATTCTTAGGATGATTGCTGGAAAGCGCTACTGTATTACCACTGATGAGAACCAGAAGGAAGAAGCGCGTCGAGTACATGATGCATTGAGAGAGTTTTCTTACTTTATTGGGCTTTTGGCGGTGGGTGATGCTCTTCCTTATCTTCAGTGGTTGGATTCAGGTGGACATGAGAAGGGGATGAAGAAACCTGCAAAGAAAATAGACGCCATTAAGTTCTATTCCTGCTTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

7.7

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 165
AfeI AGCGCT 1 cut(s) 116
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Aor51HI AGCGCT 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 21
AspLEI GCGC 2 cut(s) 117, 157
AsuHPI GGTGA 2 cut(s) 44, 227
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 23
BclI TGATCA 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmsI GCATC 2 cut(s) 160, 208
BsaBI GATNNNNATC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 33
BseGI GGATG 2 cut(s) 105, 273
BseJI GATNNNNATC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 3, 34
BspACI CCGC 1 cut(s) 209
BspFNI CGCG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 228
BssMI GATC 2 cut(s) 3, 34
BssNI GRCGYC 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 105, 273
BstFNI CGCG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 157
BstKTI GATC 2 cut(s) 6, 37
BstMBI GATC 2 cut(s) 3, 34
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 105, 273
BtsIMutI CAGTG 2 cut(s) 129, 242
BveI ACCTGC 1 cut(s) 286
CfoI GCGC 2 cut(s) 117, 157
CseI GACGC 2 cut(s) 146, 302
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 167, 257
CviJI RGCY 2 cut(s) 24, 202
CviKI_1 RGCY 2 cut(s) 24, 202
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 95
DpnI GATC 2 cut(s) 5, 36
DpnII GATC 2 cut(s) 3, 34
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 175
FaeI CATG 2 cut(s) 170, 260
FaiI YATR 2 cut(s) 168, 258
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 166, 256
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 112, 280
Fsp4HI GCNGC 1 cut(s) 22
GlaI GCGC 2 cut(s) 116, 156
GluI GCNGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 118
HgaI GACGC 2 cut(s) 146, 302
HhaI GCGC 2 cut(s) 117, 157
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 2 cut(s) 170, 260
Hin6I GCGC 2 cut(s) 115, 155
HinP1I GCGC 2 cut(s) 115, 155
HinfI GANTC 3 cut(s) 79, 91, 245
HphI GGTGA 2 cut(s) 44, 227
Hpy166II GTNNAC 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 139, 256
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 173, 281
HpyF3I CTNAG 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 2 cut(s) 170, 260
HspAI GCGC 2 cut(s) 115, 155
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 34
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 93, 155, 234, 291
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 2 cut(s) 160, 208
MalI GATC 2 cut(s) 5, 36
MboI GATC 2 cut(s) 3, 34
MboII GAAGA 4 cut(s) 161, 215, 224, 283
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 1 cut(s) 10
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 24
MvnI CGCG 1 cut(s) 157
NdeII GATC 2 cut(s) 3, 34
NlaIII CATG 2 cut(s) 170, 260
NsiI ATGCAT 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 91, 245
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 2 cut(s) 3, 34
SchI GAGTC 1 cut(s) 73
SetI ASST 3 cut(s) 26, 253, 280
SfaNI GCATC 2 cut(s) 160, 208
SsiI CCGC 1 cut(s) 209
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 37, 160
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 91, 245
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 136, 242
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 2 cut(s) 136, 242
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.