FvH4_5g31630
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
22778812 .. 22782081
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31630.t1

Sequence Viewer

Length: 1293 bp
ATGGAGCTTCAAATGCTCAACTTCTGTGCATTTTGCTCTACCTATCTTCATGTCATAACCACACTTTTCCTATTCAGCAACCTTTTCCAACCTACCGTCGTTGCAAATGCATTGAGCAATGAAACTGATCGATTCACTTTGCTCAAGTTCAAAGATTCCATAGCCACTGATCCACATGGATTCTTAAACTCATGGAACGGCTCTCTTCACTTCTGCAACTGGCATGGAATTACTTGCGGTGCAAGACATCAAAGAGTTACAGGCTTGAACCTTTCAGACAATGGTTTGAAAGGAATCATATCACCGTTCATCGGAAACATGTCTTTTCTAAGGTCCATCAACCTTGGAAATAACAGCTTCTCTGGAAAAATCCCACAAGTTGATCATTTGTCCCGACTGCGGCATCTCAATCTGAGTTACAACATGTTGGAGGGGGAAATACCAGTAAACCTGACCTTCTGCTTCCAACTCAACATCATAGATTTTGGAACAAACCACCTTGACCAAAAAATTCCTTCAGAGCTTGGTTCCTTGATGAAGCTTGTGTTTCTCAATCTTGAGAAAAACAATCTGACTGGAAGCATCCCACCTTCCTTGGGAAATCTTTCATCAATCACTCTACTTTCCTTGGGACAGAACAATTTGGTGGGCAACGTACCGGAGGAAATAGGCCGATTGAGAAGCTTATCTAGCTTTGTTATTGGTATCAATAATCTCTCGGGTACGATACCTCTCTCCCTTTTTAACATATCATCTATGAAACGCATCTCAATTGTATGTAATAAGTTTAAGGGAAGTTTTTCACCTAGCATAGGCCTAGACATGCCTAATCTCCAAATAATGGCCCTCGGCGGAAATGAATATTCTGGACAAATCCCAGCCTCATTTTCCAATGCTTCTCAGCTTCAAATACTTGATATTGCTGACAATAATTTTGTGGGGCAAGTTCCTACAAGTCTCGGAAATCTTCCAAATCTCAGCGGAGATATTCCACCAGATGTTATTGGTCTTTCCTCATTTCTCTATCTGAACTTGTCACAAAACTCATTAACTGGTAGTCTGCCTGTAGAAGTGGCAAGACTCATCCCACTGACCACGGAGTCCTTCGAAAATCAAAGTAGAACAGCTGGGATAAAGGGAACCATTGGCTATGCTGCTCCAGAGTATGCAGTTGGTGTTGAGCCATCAAAACAAGGGGATGTATATAGTTATGGGATCCTTCTATTGCAATTGTTCACAGGAAAAAGACCTACTGATGAAATGTTTGTAGACGGTTGCAATATACATACTTAA

Protein Analysis

431

Amino Acids

46.81

Weight (kDa)

5.98

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 79 3.2e-12 Leucine rich repeat N-terminal domain
LRR_8 PF13855 85 - 143 7.6e-06 Leucine rich repeat
LRR_14 PF23598 102 - 326 2.5e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 841
AccI GTMKAC 1 cut(s) 1269
AciI CCGC 4 cut(s) 237, 400, 852, 981
AclWI GGATC 3 cut(s) 164, 1210, 1223
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 2 cut(s) 657, 724
AfiI CCNNNNNNNGG 5 cut(s) 311, 399, 596, 812, 841
AflIII ACRYGT 2 cut(s) 318, 423
AgsI TTSAA 5 cut(s) 11, 151, 268, 289, 908
AluBI AGCT 8 cut(s) 7, 357, 523, 541, 684, 693, 904, 1127
AluI AGCT 8 cut(s) 7, 357, 523, 541, 684, 693, 904, 1127
Alw26I GTCTC 1 cut(s) 962
AlwI GGATC 3 cut(s) 164, 1210, 1223
Ama87I CYCGRG 1 cut(s) 718
AoxI GGCC 3 cut(s) 670, 814, 843
ApeKI GCWGC 1 cut(s) 1154
ApoI RAATTY 1 cut(s) 510
ArsI GACNNNNNNTTYG 2 cut(s) 917, 949
Asp700I GAANNNNTTC 2 cut(s) 604, 799
AspS9I GGNCC 2 cut(s) 333, 844
AsuHPI GGTGA 2 cut(s) 294, 795
AsuII TTCGAA 1 cut(s) 1107
AvaI CYCGRG 1 cut(s) 718
AvaII GGWCC 1 cut(s) 333
BamHI GGATCC 1 cut(s) 1215
BbvI GCAGC 1 cut(s) 1141
BccI CCATC 2 cut(s) 344, 1192
BceAI ACGGC 1 cut(s) 214
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 3 cut(s) 690, 807, 818
BfmI CTRYAG 1 cut(s) 1065
BisI GCNGC 2 cut(s) 401, 1155
BlsI GCNGC 2 cut(s) 402, 1156
Bme18I GGWCC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 718
BmgT120I GGNCC 2 cut(s) 333, 844
BmiI GGNNCC 3 cut(s) 529, 1141, 1217
BmsI GCATC 3 cut(s) 412, 591, 774
BpmI CTGGAG 1 cut(s) 1143
Bpu14I TTCGAA 1 cut(s) 1107
BpuEI CTTGAG 2 cut(s) 128, 578
Bsa29I ATCGAT 1 cut(s) 130
BsaJI CCNNGG 5 cut(s) 343, 594, 627, 847, 1095
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 5 cut(s) 311, 399, 596, 812, 841
Bse1I ACTGG 4 cut(s) 224, 443, 580, 1057
Bse3DI GCAATG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 130
BseDI CCNNGG 5 cut(s) 343, 594, 627, 847, 1095
BseGI GGATG 3 cut(s) 582, 1083, 1204
BseLI CCNNNNNNNGG 5 cut(s) 311, 399, 596, 812, 841
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 3 cut(s) 404, 914, 991
BseNI ACTGG 4 cut(s) 224, 443, 580, 1057
BseXI GCAGC 1 cut(s) 1141
BseYI CCCAGC 2 cut(s) 877, 1127
BshFI GGCC 3 cut(s) 672, 816, 845
BshVI ATCGAT 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 2 cut(s) 376, 645
BslI CCNNNNNNNGG 5 cut(s) 311, 399, 596, 812, 841
BsmAI GTCTC 1 cut(s) 962
BsmFI GGGAC 2 cut(s) 376, 645
BsnI GGCC 3 cut(s) 672, 816, 845
BsoBI CYCGRG 1 cut(s) 718
Bsp119I TTCGAA 1 cut(s) 1107
Bsp143I GATC 4 cut(s) 127, 169, 382, 1215
BspACI CCGC 4 cut(s) 237, 400, 852, 981
BspANI GGCC 3 cut(s) 672, 816, 845
BspCNI CTCAG 3 cut(s) 405, 913, 990
BspDI ATCGAT 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 529, 1141, 1217
BspPI GGATC 3 cut(s) 164, 1210, 1223
BspT104I TTCGAA 1 cut(s) 1107
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 4 cut(s) 224, 443, 580, 1057
BssECI CCNNGG 5 cut(s) 343, 594, 627, 847, 1095
BssMI GATC 4 cut(s) 127, 169, 382, 1215
BssT1I CCWWGG 3 cut(s) 343, 594, 627
Bst4CI ACNGT 3 cut(s) 97, 306, 1274
Bst6I CTCTTC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 1107
BstDEI CTNAG 4 cut(s) 329, 413, 900, 977
BstDSI CCRYGG 1 cut(s) 1095
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 582, 1083, 1204
BstKTI GATC 4 cut(s) 130, 172, 385, 1218
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 4 cut(s) 127, 169, 382, 1215
BstMWI GCNNNNNNNGC 2 cut(s) 13, 690
BstNSI RCATGY 3 cut(s) 322, 427, 826
BstSFI CTRYAG 1 cut(s) 1065
BstV1I GCAGC 1 cut(s) 1141
BstX2I RGATCY 1 cut(s) 1215
BstYI RGATCY 1 cut(s) 1215
Bsu15I ATCGAT 1 cut(s) 130
BsuRI GGCC 3 cut(s) 672, 816, 845
BsuTUI ATCGAT 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 1095
BtsCI GGATG 3 cut(s) 582, 1083, 1204
BtsIMutI CAGTG 2 cut(s) 165, 1088
Cfr13I GGNCC 2 cut(s) 333, 844
ClaI ATCGAT 1 cut(s) 130
Csp6I GTAC 2 cut(s) 656, 723
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 7 cut(s) 50, 176, 192, 224, 319, 424, 823
CviQI GTAC 2 cut(s) 656, 723
DdeI CTNAG 4 cut(s) 329, 413, 900, 977
DpnI GATC 4 cut(s) 129, 171, 384, 1217
DpnII GATC 4 cut(s) 127, 169, 382, 1215
DrdI GACNNNNNNGTC 1 cut(s) 1099
DseDI GACNNNNNNGTC 1 cut(s) 1099
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 867
Eco130I CCWWGG 3 cut(s) 343, 594, 627
Eco147I AGGCCT 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 718
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoT14I CCWWGG 3 cut(s) 343, 594, 627
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 3 cut(s) 343, 594, 627
FaeI CATG 7 cut(s) 53, 179, 195, 227, 322, 427, 826
FaqI GGGAC 2 cut(s) 376, 645
FatI CATG 7 cut(s) 49, 175, 191, 223, 318, 423, 822
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 1269
Fnu4HI GCNGC 2 cut(s) 401, 1155
FokI GGATG 3 cut(s) 569, 1070, 1211
Fsp4HI GCNGC 2 cut(s) 401, 1155
FspBI CTAG 3 cut(s) 690, 807, 818
GluI GCNGC 2 cut(s) 401, 1155
GsaI CCCAGC 2 cut(s) 881, 1131
GsuI CTGGAG 1 cut(s) 1143
HaeIII GGCC 3 cut(s) 672, 816, 845
HapII CCGG 1 cut(s) 659
Hin1II CATG 7 cut(s) 53, 179, 195, 227, 322, 427, 826
HindIII AAGCTT 2 cut(s) 539, 682
HinfI GANTC 6 cut(s) 132, 155, 180, 294, 1080, 1100
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 294, 795
Hpy166II GTNNAC 3 cut(s) 448, 1236, 1270
Hpy188I TCNGA 7 cut(s) 277, 314, 414, 520, 573, 962, 1029
Hpy188III TCNNGA 5 cut(s) 363, 393, 557, 867, 1160
Hpy8I GTNNAC 3 cut(s) 448, 1236, 1270
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 5 cut(s) 466, 525, 600, 1114, 1229
HpyCH4III ACNGT 3 cut(s) 97, 306, 1274
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 8 cut(s) 29, 104, 110, 216, 242, 1169, 1228, 1278
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 690
HpyF3I CTNAG 4 cut(s) 329, 413, 900, 977
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 7 cut(s) 53, 179, 195, 227, 322, 427, 826
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 127, 169, 382, 1215
LmnI GCTCC 2 cut(s) 4, 1162
Lsp1109I GCAGC 1 cut(s) 1141
LweI GCATC 3 cut(s) 412, 591, 774
MaeI CTAG 3 cut(s) 690, 807, 818
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 3 cut(s) 256, 416, 1035
MalI GATC 4 cut(s) 129, 171, 384, 1217
MboI GATC 4 cut(s) 127, 169, 382, 1215
MboII GAAGA 3 cut(s) 38, 197, 959
MfeI CAATTG 2 cut(s) 771, 1229
MflI RGATCY 1 cut(s) 1215
MluCI AATT 6 cut(s) 228, 510, 640, 771, 931, 1229
MlyI GAGTC 2 cut(s) 1074, 1109
MmeI TCCRAC 3 cut(s) 112, 408, 490
MnlI CCTC 6 cut(s) 424, 655, 741, 857, 892, 1024
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 2 cut(s) 604, 799
MseI TTAA 5 cut(s) 185, 744, 789, 1049, 1291
MspA1I CMGCKG 2 cut(s) 981, 1127
MspI CCGG 1 cut(s) 659
MunI CAATTG 2 cut(s) 771, 1229
MwoI GCNNNNNNNGC 2 cut(s) 13, 690
NdeII GATC 4 cut(s) 127, 169, 382, 1215
NlaIII CATG 7 cut(s) 53, 179, 195, 227, 322, 427, 826
NlaIV GGNNCC 3 cut(s) 529, 1141, 1217
NmeAIII GCCGAG 1 cut(s) 828
NmuCI GTSAC 1 cut(s) 1035
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 3 cut(s) 322, 427, 826
NspV TTCGAA 1 cut(s) 1107
PceI AGGCCT 1 cut(s) 816
PciI ACATGT 2 cut(s) 318, 423
PdmI GAANNNNTTC 2 cut(s) 604, 799
PfeI GAWTC 4 cut(s) 132, 155, 180, 294
PflMI CCANNNNNTGG 1 cut(s) 841
PkrI GCNGC 2 cut(s) 402, 1156
PleI GAGTC 2 cut(s) 1074, 1108
PpsI GAGTC 2 cut(s) 1074, 1108
PscI ACATGT 2 cut(s) 318, 423
PspFI CCCAGC 2 cut(s) 877, 1127
PspN4I GGNNCC 3 cut(s) 529, 1141, 1217
PspPI GGNCC 2 cut(s) 333, 844
PsuI RGATCY 1 cut(s) 1215
PvuII CAGCTG 1 cut(s) 1127
RsaI GTAC 2 cut(s) 657, 724
RsaNI GTAC 2 cut(s) 656, 723
SaqAI TTAA 5 cut(s) 185, 744, 789, 1049, 1291
SatI GCNGC 2 cut(s) 401, 1155
Sau3AI GATC 4 cut(s) 127, 169, 382, 1215
Sau96I GGNCC 2 cut(s) 333, 844
SchI GAGTC 2 cut(s) 1074, 1109
SfaNI GCATC 3 cut(s) 412, 591, 774
SfcI CTRYAG 1 cut(s) 1065
SfuI TTCGAA 1 cut(s) 1107
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 143, 557
SmoI CTYRAG 2 cut(s) 143, 557
Sse9I AATT 6 cut(s) 228, 510, 640, 771, 931, 1229
SseBI AGGCCT 1 cut(s) 816
SsiI CCGC 4 cut(s) 237, 400, 852, 981
SspI AATATT 1 cut(s) 863
SspMI CTAG 3 cut(s) 690, 807, 818
StuI AGGCCT 1 cut(s) 816
StyI CCWWGG 3 cut(s) 343, 594, 627
TaaI ACNGT 3 cut(s) 97, 306, 1274
TaiI ACGT 1 cut(s) 657
TaqI TCGA 2 cut(s) 130, 1107
TasI AATT 6 cut(s) 228, 510, 640, 771, 931, 1229
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 4 cut(s) 132, 155, 180, 294
Tru1I TTAA 5 cut(s) 185, 744, 789, 1049, 1291
Tru9I TTAA 5 cut(s) 185, 744, 789, 1049, 1291
TscAI CASTG 2 cut(s) 172, 1095
TseFI GTSAC 1 cut(s) 1035
TseI GCWGC 1 cut(s) 1154
Tsp45I GTSAC 1 cut(s) 1035
TspDTI ATGAA 8 cut(s) 38, 135, 298, 551, 597, 773, 873, 1272
TspGWI ACGGA 1 cut(s) 1112
TspRI CASTG 2 cut(s) 172, 1095
Van91I CCANNNNNTGG 1 cut(s) 841
VpaK11BI GGWCC 1 cut(s) 333
XagI CCTNNNNNAGG 1 cut(s) 810
XapI RAATTY 1 cut(s) 510
XceI RCATGY 3 cut(s) 322, 427, 826
XmiI GTMKAC 1 cut(s) 1269
XmnI GAANNNNTTC 2 cut(s) 604, 799
XspI CTAG 3 cut(s) 690, 807, 818
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.