Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001565.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

272355 .. 272711

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001565.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtttaaagagggtttgaacctccataacttcgtcaagatggctataccaggaagagtgattcagattgtagatcctactcttcttgccactttagaagagacaacacctgcaacatcacaaaatatagtgaactacatcagtagttacaataatgaaatcgaagcagttgaagaaaacattgacaatgagaatttaagcaagatgaacacttatgtgtggaaatgcatacttccaacccttaaggttggacttgcatgctcagaagaatcactaaggaatagaatgtctatcgaggaggtccacaggaagctacaccatataaaagatgcttacactagtgttgacatctgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

13.45

Weight (kDa)

5.3

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	193
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	19, 173
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	301
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	242
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	3 cut(s)	49, 87, 93
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	262, 275
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	1 cut(s)	258
CviJI	RGCY	2 cut(s)	44, 313
CviKI_1	RGCY	2 cut(s)	44, 313
DdeI	CTNAG	2 cut(s)	262, 275
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraI	TTTAAA	1 cut(s)	7
Eam1104I	CTCTTC	3 cut(s)	49, 87, 93
EarI	CTCTTC	3 cut(s)	49, 87, 93
Eco47I	GGWCC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	230
FaeI	CATG	1 cut(s)	261
FaiI	YATR	8 cut(s)	27, 47, 128, 216, 230, 259, 321, 323
FatI	CATG	1 cut(s)	257
FspBI	CTAG	1 cut(s)	339
Hin1II	CATG	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	61, 269
Hpy166II	GTNNAC	3 cut(s)	133, 304, 346
Hpy188I	TCNGA	2 cut(s)	66, 265
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	133, 304, 346
HpyCH4V	TGCA	3 cut(s)	113, 228, 257
HpyF3I	CTNAG	2 cut(s)	262, 275
Hsp92II	CATG	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	36, 63, 123, 292
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	5 cut(s)	66, 74, 110, 185, 278
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	193
MmeI	TCCRAC	2 cut(s)	229, 260
MnlI	CCTC	4 cut(s)	4, 32, 289, 292
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	4 cut(s)	6, 197, 243, 355
MslI	CAYNNNNRTG	1 cut(s)	215
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	61, 269
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	6, 197, 243, 355
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	5 cut(s)	24, 112, 249, 303, 315
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	338
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	49
TaqI	TCGA	2 cut(s)	162, 294
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	61, 269
Tru1I	TTAA	4 cut(s)	6, 197, 243, 355
Tru9I	TTAA	4 cut(s)	6, 197, 243, 355
TspDTI	ATGAA	2 cut(s)	171, 221
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.