Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

23839145 .. 23840261

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGCCAAGCAACGTTTTTATTGACGATGACATGGTTGCTCGTGTCGGTGATTTTGGGTTAGCAAGACTCATCCCACTGACTGACTCCTATGAAAATAAAAGCAGCACAGTCAGGATAAAGGGAACCATTGGCTATGGTGCTCCAGAGACTGCAACTTCAACAACAAACAATGAAGTGACCAGCATCCATGGTTACTACAATGACATCCAAGTTGAAGAAGACAACATTGAAAATGAGAATTTAAGCAAGATGAACGCTTATGTGTGGAAGTACATACTTCCTACCCTTAAGATTGGACTTGCATTCTCAGAAGAACCACCAAGGAATATGATGTCTATGGAGGAGGTCCACAGAGAGCTACACCATATAAAAAATGCGTACATTGATGTTGACATCCGTCGAGAGAGGCTAAGAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.21

Weight (kDa)

5.37

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 54	2.9e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	2 cut(s)	275, 383
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	162, 218, 233
AluBI	AGCT	2 cut(s)	361, 423
AluI	AGCT	2 cut(s)	361, 423
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	190, 323
BseDI	CCNNGG	2 cut(s)	190, 323
BseGI	GGATG	4 cut(s)	72, 186, 207, 396
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	190, 323
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	190, 323
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	310, 413
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	72, 186, 207, 396
BstMAI	GTCTC	1 cut(s)	143
BstPAI	GACNNNNGTC	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	72, 186, 207, 396
BtsIMutI	CAGTG	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	274, 382
CviAII	CATG	2 cut(s)	34, 191
CviJI	RGCY	5 cut(s)	7, 135, 361, 412, 423
CviKI_1	RGCY	5 cut(s)	7, 135, 361, 412, 423
CviQI	GTAC	2 cut(s)	274, 382
DdeI	CTNAG	2 cut(s)	310, 413
Eco130I	CCWWGG	2 cut(s)	190, 323
Eco47I	GGWCC	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	190, 323
ErhI	CCWWGG	2 cut(s)	190, 323
FaeI	CATG	2 cut(s)	37, 194
FatI	CATG	2 cut(s)	33, 190
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	4 cut(s)	59, 173, 194, 383
Fsp4HI	GCNGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	37, 194
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	69, 86
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	352, 394
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	115, 146, 404
Hpy8I	GTNNAC	2 cut(s)	352, 394
Hpy99I	CGWCG	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	155, 305
HpyF3I	CTNAG	2 cut(s)	310, 413
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	37, 194
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	3 cut(s)	100, 159, 196
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	178, 194
MboII	GAAGA	3 cut(s)	230, 233, 326
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	63, 80
MnlI	CCTC	3 cut(s)	337, 340, 402
MseI	TTAA	2 cut(s)	245, 291
MspCI	CTTAAG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	190
NlaIII	CATG	2 cut(s)	37, 194
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	178
PctI	GAATGC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	2 cut(s)	63, 80
PpsI	GAGTC	2 cut(s)	63, 80
PshAI	GACNNNNGTC	1 cut(s)	399
Psp1406I	AACGTT	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	275, 383
RsaNI	GTAC	2 cut(s)	274, 382
SaqAI	TTAA	2 cut(s)	245, 291
SatI	GCNGC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	63, 80
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	4 cut(s)	18, 351, 363, 425
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	190, 323
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	403
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	245, 291
Tru9I	TTAA	2 cut(s)	245, 291
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	17, 108, 189, 269
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.