Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

8114357 .. 8115462

Gene Structure 1106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGCCGAGCAATGTTCTTCTTGATGATGACATGGTTGCTCGTGTAGGTGATTTTGGGTTAGCAAGACTCATCTCAACAACCATGGACTCCTCTCAAAATCAAAGTAGCTCAGTTGTGATAAAGGGTACCATTGGCTATGCTGCTCCAGAGTATGCGAGTGGTGGTAAGCCATCAAGACAAGGGGATGTATATAGTTATGGGGTGCTTGTATTGCAAATGTTCACAGGAAGAAGACCTATAGACGAAATGTTTAAAGAGGGTTTGAACCTCCATAACTTTGTCAAGATGGCCATACCGGGAAGAGTGATGCAGATTGTAGATCCTACTCTTCTTGCCACTTTAGAAGAGGCAGCACCTACAACATCACAAAATATAGTGAACTACATCGGTGGTTACAATAATGAAATAGAAGCAGTTGAAGAAAACATTGACATTGAGAATTTAAGCAAGATGAACACTTATGTGTGGAAGTGCATACTTCCAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATGTCTATGGAGGAGGTCCATAGGAAGCTACACCATATAAAAGATGCTTACACCGGTGTTGACATCTGTCAAGAAAGGCCAAGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

208

Amino Acids

23.17

Weight (kDa)

5.62

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 95	3.8e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 87	3.9e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	442
AfaI	GTAC	1 cut(s)	130
AflII	CTTAAG	1 cut(s)	491
AgeI	ACCGGT	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	268, 422
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	111, 562, 624
AluI	AGCT	3 cut(s)	111, 562, 624
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	291, 611
ApeKI	GCWGC	2 cut(s)	143, 353
ApoI	RAATTY	1 cut(s)	442
AsiGI	ACCGGT	1 cut(s)	587
Asp718I	GGTACC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	62, 513
AvaII	GGWCC	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	130, 365
BccI	CCATC	2 cut(s)	181, 283
BcnI	CCSGG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	144, 354
BlsI	GCNGC	2 cut(s)	145, 355
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	300, 568
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	84, 524
BsaWI	WCCGGW	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	84, 524
BseGI	GGATG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	82, 560
BseXI	GCAGC	2 cut(s)	130, 365
BshFI	GGCC	2 cut(s)	293, 613
BshNI	GGYRCC	1 cut(s)	128
BshTI	ACCGGT	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	299, 588
BsnI	GGCC	2 cut(s)	293, 613
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	84
BspANI	GGCC	2 cut(s)	293, 613
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	84, 524
BssMI	GATC	1 cut(s)	322
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	84, 524
Bst2BI	CACGAG	1 cut(s)	42
Bst6I	CTCTTC	3 cut(s)	298, 336, 342
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	510
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	130, 365
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	293, 613
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	587
CviAII	CATG	3 cut(s)	34, 85, 507
CviJI	RGCY	8 cut(s)	7, 111, 138, 172, 293, 562, 613, 624
CviKI_1	RGCY	8 cut(s)	7, 111, 138, 172, 293, 562, 613, 624
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	298, 336, 342
EarI	CTCTTC	3 cut(s)	298, 336, 342
Eco130I	CCWWGG	2 cut(s)	84, 524
Eco47I	GGWCC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	84, 524
ErhI	CCWWGG	2 cut(s)	84, 524
FaeI	CATG	3 cut(s)	37, 88, 510
FatI	CATG	3 cut(s)	33, 84, 506
Fnu4HI	GCNGC	2 cut(s)	144, 354
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	144, 354
GluI	GCNGC	2 cut(s)	144, 354
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	293, 613
HapII	CCGG	2 cut(s)	299, 588
Hin1II	CATG	3 cut(s)	37, 88, 510
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	3 cut(s)	69, 89, 518
HpaII	CCGG	2 cut(s)	299, 588
HphI	GGTGA	2 cut(s)	62, 513
Hpy166II	GTNNAC	3 cut(s)	225, 382, 595
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	5 cut(s)	23, 149, 177, 286, 605
Hpy8I	GTNNAC	3 cut(s)	225, 382, 595
HpyCH4V	TGCA	4 cut(s)	217, 313, 477, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	3 cut(s)	37, 88, 510
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	4 cut(s)	162, 213, 312, 601
Lsp1109I	GCAGC	2 cut(s)	130, 365
LweI	GCATC	2 cut(s)	300, 568
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	8 cut(s)	11, 243, 246, 315, 323, 359, 434, 527
MflI	RGATCY	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	63, 83
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	6 cut(s)	103, 253, 281, 343, 538, 541
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	3 cut(s)	255, 446, 492
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	2 cut(s)	299, 588
MspR9I	CCNGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	300
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	3 cut(s)	37, 88, 510
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	33
NspI	RCATGY	1 cut(s)	510
OliI	CACNNNNGTG	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	518
PinAI	ACCGGT	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	145, 355
PleI	GAGTC	2 cut(s)	63, 83
PpsI	GAGTC	2 cut(s)	63, 83
PshAI	GACNNNNGTC	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	255, 446, 492
SatI	GCNGC	2 cut(s)	144, 354
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	2 cut(s)	63, 83
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	8 cut(s)	52, 113, 241, 273, 361, 552, 564, 626
SfaNI	GCATC	2 cut(s)	300, 568
SfcI	CTRYAG	1 cut(s)	240
SgrAI	CRCCGGYG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	84, 524
TasI	AATT	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	3 cut(s)	255, 446, 492
Tru9I	TTAA	3 cut(s)	255, 446, 492
TseI	GCWGC	2 cut(s)	143, 353
TspDTI	ATGAA	3 cut(s)	17, 420, 470
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.