Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

30009404 .. 30012367

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCAAATGGAAATTTAGAGGAGTGGCTGCACAGAGAAAATCAATCAACGAGTTTGAACCTTCTTCAAAGATTGAATATTGCTGTTGATGTGGCTTCTGCATTGTGTTATCTTCATGACTATTGTGAACCACAAATCATTCACTGTGACATGAAGCCGAGCAACATTCTTCTTGATGATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTAGCAAGACTCATCTCAACAACCACGGACTCCTCTCAAAATCAAAGTAGCACAGTTAGAATAAAGGGAACCATTGGCTATGCTGCTCCAGAGTATGCGTGTGGTGTTGAGCCATCAAGAGAAGGAGATGTATATAGTTATGGGGTGCTCGTGCTGCAAATGTTCACAGGAAGAAGACCTATCGACGATATGTTTAAAGATGGTTTGAACCTCCATAACTTAGTCAAGATGGCCATACCAGAAACAGTGATGCAGATTGTAGATCCTACTCTTCTTACCACTTTAGAAGAGACAACACCTGCAACATCACAAAATGTAGTGAACTACATCAACTGTTACAATAATGAAATTGAAGCAGTTGAAGAAAACATTGACAATGAGAATTTAAGCAAGATGAACACTGTGTGGAAGTGCATACTTCCAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATGTCTATGGAGGAGGTCCACAGGAAGCTACACCATATAAAAGATGCTTACACTGGTGTTGATCAACATCTGTCAAGAAAGGCCAAGAAGAAGCTAAACAATAGGCAGGATGATAGCCTGGAAGTGTGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

272

Amino Acids

30.79

Weight (kDa)

5.3

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 147	1.8e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 136	1.3e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	517
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	13, 592
AdeI	CACNNNGTG	1 cut(s)	615
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	6 cut(s)	58, 68, 76, 418, 563, 572
AjnI	CCWGG	1 cut(s)	798
AluBI	AGCT	2 cut(s)	709, 775
AluI	AGCT	2 cut(s)	709, 775
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	441, 762
ApeKI	GCWGC	3 cut(s)	28, 293, 364
ApoI	RAATTY	2 cut(s)	13, 592
AspS9I	GGNCC	1 cut(s)	697
AsuHPI	GGTGA	2 cut(s)	212, 660
AvaII	GGWCC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	443
BauI	CACGAG	2 cut(s)	192, 359
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	15, 280, 351
BccI	CCATC	3 cut(s)	331, 404, 433
BciT130I	CCWGG	1 cut(s)	800
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	3 cut(s)	29, 294, 365
BlsI	GCNGC	3 cut(s)	30, 295, 366
Bme1390I	CCNGG	1 cut(s)	800
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	800
BmsI	GCATC	2 cut(s)	450, 715
BpiI	GAAGAC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	234, 671
Bse1I	ACTGG	1 cut(s)	739
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	234, 671
BseGI	GGATG	1 cut(s)	796
BseJI	GATNNNNATC	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	3 cut(s)	35, 232, 707
BseXI	GCAGC	3 cut(s)	15, 280, 351
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	443, 764
BsiHKAI	GWGCWC	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	443, 764
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	472, 742
BspANI	GGCC	2 cut(s)	443, 764
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	234, 671
BssMI	GATC	2 cut(s)	472, 742
BssSI	CACGAG	2 cut(s)	192, 359
BssT1I	CCWWGG	1 cut(s)	671
Bst2BI	CACGAG	2 cut(s)	192, 359
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	5 cut(s)	146, 265, 457, 545, 613
Bst6I	CTCTTC	2 cut(s)	486, 492
BstAFI	CTTAAG	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	1 cut(s)	430
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	796
BstKTI	GATC	2 cut(s)	475, 745
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	2 cut(s)	472, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	798
BstV1I	GCAGC	3 cut(s)	15, 280, 351
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	443, 764
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	796
BtsIMutI	CAGTG	4 cut(s)	142, 462, 609, 732
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	697
CviAII	CATG	4 cut(s)	116, 151, 184, 654
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	2 cut(s)	474, 744
DpnII	GATC	2 cut(s)	472, 742
DraI	TTTAAA	1 cut(s)	406
DraIII	CACNNNGTG	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	486, 492
EarI	CTCTTC	2 cut(s)	486, 492
Eco130I	CCWWGG	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	4 cut(s)	119, 154, 187, 657
FatI	CATG	4 cut(s)	115, 150, 183, 653
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	29, 294, 365
FokI	GGATG	1 cut(s)	803
Fsp4HI	GCNGC	3 cut(s)	29, 294, 365
GluI	GCNGC	3 cut(s)	29, 294, 365
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	443, 764
Hin1II	CATG	4 cut(s)	119, 154, 187, 657
HinfI	GANTC	3 cut(s)	219, 239, 665
HphI	GGTGA	2 cut(s)	212, 660
Hpy166II	GTNNAC	4 cut(s)	128, 375, 532, 700
Hpy188I	TCNGA	1 cut(s)	661
Hpy188III	TCNNGA	6 cut(s)	116, 173, 299, 327, 436, 756
Hpy8I	GTNNAC	4 cut(s)	128, 375, 532, 700
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	71, 326
HpyCH4III	ACNGT	5 cut(s)	146, 265, 457, 545, 613
HpyCH4V	TGCA	7 cut(s)	31, 101, 367, 463, 512, 624, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	430
Hsp92II	CATG	4 cut(s)	119, 154, 187, 657
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	472, 742
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	312, 363, 462, 522, 688, 720, 773, 785, 812
Lsp1109I	GCAGC	3 cut(s)	15, 280, 351
LweI	GCATC	2 cut(s)	450, 715
MaeIII	GTNAC	2 cut(s)	146, 545
MalI	GATC	2 cut(s)	474, 744
MboI	GATC	2 cut(s)	472, 742
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	3 cut(s)	13, 558, 592
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	213, 233
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	5 cut(s)	13, 253, 431, 685, 688
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	405, 596, 639
Msp20I	TGGCCA	1 cut(s)	443
MspCI	CTTAAG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	2 cut(s)	472, 742
NlaIII	CATG	4 cut(s)	119, 154, 187, 657
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	657
PaeI	GCATGC	1 cut(s)	657
PagI	TCATGA	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	30, 295, 366
PleI	GAGTC	2 cut(s)	213, 233
PpsI	GAGTC	2 cut(s)	213, 233
Psp6I	CCWGG	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	798
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	472
SaqAI	TTAA	3 cut(s)	405, 596, 639
SatI	GCNGC	3 cut(s)	29, 294, 365
Sau3AI	GATC	2 cut(s)	472, 742
Sau96I	GGNCC	1 cut(s)	697
SchI	GAGTC	2 cut(s)	213, 233
ScrFI	CCNGG	1 cut(s)	800
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	7 cut(s)	63, 391, 423, 511, 699, 711, 777
SfaNI	GCATC	2 cut(s)	450, 715
SinI	GGWCC	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	3 cut(s)	13, 558, 592
SspI	AATATT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	798
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	5 cut(s)	146, 265, 457, 545, 613
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	13, 558, 592
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	3 cut(s)	405, 596, 639
Tru9I	TTAA	3 cut(s)	405, 596, 639
TscAI	CASTG	4 cut(s)	149, 462, 616, 739
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	3 cut(s)	28, 293, 364
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	104, 167, 570, 620
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	4 cut(s)	149, 462, 616, 739
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	2 cut(s)	13, 592
XceI	RCATGY	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.