Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172886.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 596

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

agtacgcaagtggtgtagaggcatcaagacagggagatgtgtatagttatgggattcttgtattggaaatgttcacaggaagaaggcccaccgatgaaatgttcatagacggtttgaaactccgcgactttgttaagatggcattaccaggaaggcttgtgcagattgtggacgctgctcttctcgccaccctagaagagacagctcctacagcaactgcaggaaatgaagtgaactacatgcgtagaggtcataacaatgaaattgaagcagaagaggaaaatagagattatgagaacctaagcaagatggacacaagtgtgtggaagtgtatacattcaatctttgagataggactggcgtgctcggaggaatcaccaaagaatagaatgtgcatggagaatgtcctcagggagctccaccgtatacaaattgcttacattggtgttgtgatcaatcgagagagaccaagaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

5.31

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	333, 426
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	4
AgsI	TTSAA	3 cut(s)	117, 268, 341
AjnI	CCWGG	1 cut(s)	147
AleI	CACNNNNGTG	1 cut(s)	319
AluBI	AGCT	2 cut(s)	205, 417
AluI	AGCT	2 cut(s)	205, 417
Alw21I	GWGCWC	2 cut(s)	367, 419
Alw26I	GTCTC	2 cut(s)	193, 459
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	419
Bbv12I	GWGCWC	2 cut(s)	367, 419
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	132, 303
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	193, 459
BfaI	CTAG	1 cut(s)	193
BfmI	CTRYAG	2 cut(s)	209, 218
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	362
Bse21I	CCTNAGG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	367, 419
BsmAI	GTCTC	2 cut(s)	193, 459
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	367, 419
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	422
BspFNI	CGCG	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	452
BssNAI	GTATAC	2 cut(s)	334, 427
Bst1107I	GTATAC	2 cut(s)	334, 427
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	112, 424
Bst6I	CTCTTC	3 cut(s)	185, 191, 269
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	301, 409
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	1 cut(s)	455
BstMAI	GTCTC	2 cut(s)	193, 459
BstMBI	GATC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 211
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	209, 218
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	162
BstZ17I	GTATAC	2 cut(s)	334, 427
Bsu36I	CCTNAGG	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	3
CviAII	CATG	2 cut(s)	240, 396
CviJI	RGCY	4 cut(s)	87, 156, 205, 417
CviKI_1	RGCY	4 cut(s)	87, 156, 205, 417
CviQI	GTAC	1 cut(s)	3
DdeI	CTNAG	2 cut(s)	301, 409
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
Eam1104I	CTCTTC	3 cut(s)	185, 191, 269
EarI	CTCTTC	3 cut(s)	185, 191, 269
Ecl136II	GAGCTC	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	419
FaeI	CATG	2 cut(s)	243, 399
FaiI	YATR	9 cut(s)	44, 50, 106, 241, 254, 293, 334, 397, 427
FatI	CATG	2 cut(s)	239, 395
FbaI	TGATCA	1 cut(s)	452
FblI	GTMKAC	2 cut(s)	333, 426
Fnu4HI	GCNGC	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	193
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	243, 399
HinfI	GANTC	2 cut(s)	54, 373
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	5 cut(s)	74, 171, 234, 334, 427
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	2 cut(s)	26, 460
Hpy8I	GTNNAC	5 cut(s)	74, 171, 234, 334, 427
HpyAV	CCTTC	2 cut(s)	77, 146
HpyCH4III	ACNGT	2 cut(s)	112, 424
HpyCH4V	TGCA	3 cut(s)	162, 220, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 211
HpyF3I	CTNAG	2 cut(s)	301, 409
Hsp92II	CATG	2 cut(s)	243, 399
Ksp22I	TGATCA	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	452
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	210, 414, 422
LpnPI	CCDG	7 cut(s)	16, 62, 134, 161, 206, 343, 396
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	193
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	4 cut(s)	92, 172, 208, 286
MhlI	GDGCHC	2 cut(s)	367, 419
MluCI	AATT	2 cut(s)	263, 431
MnlI	CCTC	5 cut(s)	12, 241, 270, 363, 418
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	2 cut(s)	257, 319
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	184, 211
NdeII	GATC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	243, 399
NspI	RCATGY	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	54, 373
PkrI	GCNGC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	4
RsaNI	GTAC	1 cut(s)	3
RseI	CAYNNNNRTG	2 cut(s)	257, 319
SacI	GAGCTC	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	452
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	367, 419
SetI	ASST	4 cut(s)	207, 252, 302, 419
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	2 cut(s)	209, 218
SmiMI	CAYNNNNRTG	2 cut(s)	257, 319
Sse9I	AATT	2 cut(s)	263, 431
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	193
SstI	GAGCTC	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	112, 424
TaqI	TCGA	1 cut(s)	459
TasI	AATT	2 cut(s)	263, 431
TfiI	GAWTC	2 cut(s)	54, 373
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	93, 110, 242, 275
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	2 cut(s)	333, 426
XspI	CTAG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.