Rroxscaffold_4G00287330
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
8368300 .. 8372099
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287330.1

Sequence Viewer

Length: 3132 bp
ATGGATCTTCATGAACCCAGGTTATGTGCATTTTGGTTTAAATCCCTTCATGTGATTACCCATCTCCTCCTTGTTATGAACTTCTTCCTCCCTACCACTATTGCAAGATCATTTGGAAATGAAACCGATCGATTTGCTTTACTCAAATTCAAAGAGTCCATAATCACGGACCCACTAGGGTTCTTGAACTCATGGAATGACTCCCTTCACTTTTGCAACTGGCATGGGATTTCCTGCGGCAAGAGGCATCAGAGAGTAGTAGCCTTGAACCTTTCTCATTCTGATTTGCATGGAACCATATCACCTTACACTGGCAACCTCTCTTTTCTAAGGTCCATCGACCTTGAAAACAACAACTTCTCTGGTAAGATTCCACAGCAACTCGATCATTTGCACAGACTGCGCCTTCTCAATCTACGCACAATTCCACCAGACCTCGGCTCGTTGGTGAAGCTTGTGTATCTAGTTCTTGAGCAAAACAATTTGACAGGAGGCATCCCACCTTCCTTGGGAAATCTTTCATCAATCGGTTTACTTGGCGTAGGAGATAACAATTTGGTGGGCTACGTTCCAGAGGACATTGGCCGATTGAGAAGCTTATCTTTTTTTAGCGTTGGCCCCAATAAACTCTCTGGTATGATACCTCGTTCCCTTTTTAACATAACATCTATGGAGCACTTCATACTTGTAGATAACAAGTTTAACGGCAGTATTCCACCCGCCATAGGCCTCAACATGCCTCATCTCCTAGAAATGTTCGTCGGCGGAAATGAACTCTTTGGGCAAATCCCATCTTCATTTGCCAATGCTTCTCTGCTTCAGAAACTTGATATTAGTGAAAATAATTTTGTAGGGCAAGTTCCCAAAAGTTTTGGAGATCTTCCAGATCTCCGGTATCTTGATGTAAGTGACAATAATCTAGGAAGTTTTTCTGCTAATGACTTGGATTTTATAACATCCTTGGCCAATTGCAGCCGACTGGAAATGCTTGATATGAGTTTCAACAATTTTAGAGGTGTTTTACCCAACTCTGTAGTCAACTTGTCAACTCAACTGGCTGAATTCTACTTTGGACGCAATCATATATCAGGAGTGATCCCTGAAACATTAGAAAATCTTAACAATTTAATAGCCTTGAGCCTGGATGATAACCTGTTCAGAGGCGCCATTCCTACCTCTATTGGCAAATTACAAAAGCTGCAAGGATTGGGTTTAAGAGATAATAGATTATCAGGATGGATCCCATCTTCCATAGGAAACCTCACTCAATTGTATTACCTCGACTTGTCAGGAAATGACTTGGAAGGAAACGTTCCTCCAAGTATTGGAAACTGCCAACATTTGCAGGAGATGTATACATCAGATAACAGGCTTAGTGGAGATATACCACCACAGGTGATTGGTCTTTCCTCCCTTGTCTCTCTCAGCTTATCACAAAACTCACTAACTGGCAGCCTCCCTGTGGAAGTGGGTCAGCTGAAGAATATTTTTGCCCTTCGCATCAGTAGAAATAATTTGACTGGAAAAATTCCAGAAATCATTGGTGGCTGTATGAGCCTTGAACTTCTTGACCTACAAGAGAATCTCTTTCAAGGTATGATACCTTCATCTTTGGCTTCTTTGAGAGGTCTTCGGGAGTTAGATCTTTCACGAAACAATTTGTCAGGGAGAATTCCAAAAAACTTACAGACACTTCCATACCTGCTATATTTAAACCTGTCTTTCAATAATCTGGAAGGTGAGGTACCAAAAGAAGGAGTGTTTCGAAACACAAGCGCCACATCCTTGGTTGGAAATAGCAAACTTTGTGGCAGTGATGTTCCTGAATTTCAGCTATCAGCATGCCCCATCAGAAAGAAGAGAAAATTCAAACTAAAGTTCACAATTTCGTTAGTGGCTGGATGCTCTCTTGTGTTTGCAGTCTTGGTTACTCTTTATTGGAGGAGAAAATTGAGAAAGAAACCATTAGCTGTAGACTCATCAATCAACTTCTTCCCGGAGGTTTCATATAAGACACTTCATCAAGCTACTGGTGGATTCTCTCGGAGCAGTCTAATTGGATCAGGGGGTTTTGGCTCTGTATACAAAGGGATTCTTGATCACGGAGAAAATAACGTACTTGCCATAAAGGTCATCAACCTTCAACAGAGAGGGGCTTCCAAGAGTTTCACGGCAGAATGCAATGCACTAAGAAATATCCGGCACCGAAATCTTGTCAAGATCTTAACTTGCTGCTCCAGCATGGATTACAATGGTACTGAATTCAAAGCTCTAATTTTTGAATATATGTCAAATGGAAGTTTAGAGGAGTGGCTGCACAGAGAAAACCAATCAATGAGTTTGACCCTTCTTCAAAGATTGAATATTGTTGTTGATGTGGCTTCTGCATTATGCTATCTTCATGACCATTGTGAACCTCCAATCATTCACTGCGACATGAAGCCAAGTAATGTTCTTCTTGACGATGACATGGTTGCTCATGTAGGTGATTTTGGCTTAGCCAGACTCATCCCAACCACCACAGAGTCCTCGCAAACTCAGAATAGCACTATTGGAATAAAGGGAACAATCGGCTATGCTGCTCCAGAGTACGCAAGTGGCGTAGAGGCATCAAGACAGGGAGATGTATATAGTTATGGGATTCTTGTATTGGAATTGTTCACAGGAAGAAGACCCACAGACGAAATGTTCAAAGACGGTTTGAAACTCCACGACTTTGTTAAGAAGGCATTACCAGGAAGGCTTGTGCAGATTGTGGACGCTGCTCTTCTCGCCACCCTAGAAGAGACAGCTCCTGCAGCAACTGTAGGAAATGAAGTGAACTACATGCTTACAGGTCATAACAATGAAATTGAAGCAGAAGAGGAAAATAGAGATTATGAGAACCTAAGCAGGGTGGACACACGTGTGTGGAAGTGTATACATTCAATATTTGAGATAGGACTGGCGTGCTCCGAGGAATCACGAGAGAATAGAATGTGTATGAAGGATGTCCTCAGGGACCTCCACCGTATACAAATTGCTTACAATGCTGTTGTGATCAATCGAGAGAAACCAAGAGGCAAAACAACAGGTTTGGAGTTGCTTGTTCCAGAGAGCGAATGGAGACTAGCAAATCTTGTAGGCTTGTAG

Protein Analysis

1043

Amino Acids

115.59

Weight (kDa)

6.32

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 79 2.9e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 85 - 302 1.5e-09 Leucine-rich repeat region
LRR_8 PF13855 249 - 307 1.4e-07 Leucine rich repeat
LRR_8 PF13855 273 - 337 4.1e-07 Leucine rich repeat
LRR_14 PF23598 370 - 453 2.8e-08 Leucine-rich repeat region
LRR_14 PF23598 461 - 554 7.5e-06 Leucine-rich repeat region
LRR_8 PF13855 519 - 578 4.5e-08 Leucine rich repeat
Pkinase PF00069 681 - 895 1.6e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 684 - 897 5.5e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 1710
Acc65I GGTACC 1 cut(s) 1744
AccB1I GGYRCC 3 cut(s) 1163, 1744, 2202
AccB7I CCANNNNNTGG 1 cut(s) 1325
AccI GTMKAC 5 cut(s) 1355, 1974, 2082, 2920, 3013
AciI CCGC 3 cut(s) 237, 720, 765
AclI AACGTT 1 cut(s) 1311
AclWI GGATC 5 cut(s) 12, 1090, 1234, 1247, 2068
AcoI YGGCCR 2 cut(s) 583, 963
AcsI RAATTY 7 cut(s) 146, 1061, 1527, 1671, 1826, 1865, 2261
AcuI CTGAAG 2 cut(s) 803, 1499
AcvI CACGTG 1 cut(s) 2906
AcyI GRCGYC 1 cut(s) 1164
AfaI GTAC 4 cut(s) 1746, 2118, 2257, 2591
AfiI CCNNNNNNNGG 8 cut(s) 311, 437, 509, 725, 1325, 1462, 1754, 2893
AflIII ACRYGT 2 cut(s) 2903, 2905
AjnI CCWGG 3 cut(s) 17, 1140, 2734
AjuI GAANNNNNNNTTGG 2 cut(s) 1053, 1085
AleI CACNNNNGTG 2 cut(s) 2906, 2908
Alw21I GWGCWC 2 cut(s) 678, 2954
Alw26I GTCTC 3 cut(s) 1423, 2780, 3100
AlwI GGATC 5 cut(s) 12, 1090, 1234, 1247, 2068
AlwNI CAGNNNCTG 2 cut(s) 2795, 2804
AoxI GGCC 4 cut(s) 583, 616, 727, 963
ApeKI GCWGC 8 cut(s) 972, 1198, 1452, 2232, 2314, 2579, 2762, 2798
ApoI RAATTY 7 cut(s) 146, 1061, 1527, 1671, 1826, 1865, 2261
Asp700I GAANNNNTTC 3 cut(s) 83, 517, 928
Asp718I GGTACC 1 cut(s) 1744
AspLEI GCGC 3 cut(s) 405, 1166, 1778
AspS9I GGNCC 4 cut(s) 169, 333, 617, 3001
AsuC2I CCSGG 1 cut(s) 1997
AsuHPI GGTGA 5 cut(s) 294, 460, 1408, 1751, 2498
AsuII TTCGAA 1 cut(s) 1765
AvaII GGWCC 3 cut(s) 169, 333, 3001
AxyI CCTNAGG 1 cut(s) 2996
BalI TGGCCA 1 cut(s) 965
BamHI GGATCC 1 cut(s) 1239
BanI GGYRCC 3 cut(s) 1163, 1744, 2202
BarI GAAGNNNNNNTAC 4 cut(s) 1588, 1620, 1728, 1760
BauI CACGAG 1 cut(s) 2964
BbrPI CACGTG 1 cut(s) 2906
BbsI GAAGAC 2 cut(s) 1622, 2677
Bbv12I GWGCWC 2 cut(s) 678, 2954
BbvI GCAGC 8 cut(s) 984, 1185, 1464, 2219, 2301, 2566, 2749, 2810
BccI CCATC 6 cut(s) 69, 344, 799, 1230, 1252, 1856
BceAI ACGGC 2 cut(s) 721, 2187
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 3 cut(s) 19, 1142, 2736
BclI TGATCA 2 cut(s) 2098, 3039
BcnI CCSGG 1 cut(s) 1997
BcoDI GTCTC 3 cut(s) 1423, 2780, 3100
BfaI CTAG 6 cut(s) 176, 464, 749, 920, 2780, 3110
BfmI CTRYAG 4 cut(s) 1032, 1971, 2796, 2805
BfoI RGCGCY 2 cut(s) 1167, 1779
BfuAI ACCTGC 1 cut(s) 1710
BglII AGATCT 4 cut(s) 877, 886, 1642, 2220
BisI GCNGC 9 cut(s) 238, 973, 1199, 1453, 2233, 2315, 2580, 2763, 2799
BlpI GCTNAGC 1 cut(s) 2497
BlsI GCNGC 9 cut(s) 239, 974, 1200, 1454, 2234, 2316, 2581, 2764, 2800
Bme1390I CCNGG 4 cut(s) 19, 1142, 1997, 2736
Bme18I GGWCC 3 cut(s) 169, 333, 3001
BmgT120I GGNCC 4 cut(s) 169, 333, 617, 3001
BmiI GGNNCC 8 cut(s) 171, 295, 619, 1165, 1241, 1746, 2204, 3002
BmrFI CCNGG 4 cut(s) 19, 1142, 1997, 2736
BmsI GCATC 5 cut(s) 256, 504, 1509, 1892, 2618
BpiI GAAGAC 2 cut(s) 1622, 2677
BpmI CTGGAG 2 cut(s) 2221, 2568
Bpu10I CCTNAGC 1 cut(s) 2888
Bpu1102I GCTNAGC 1 cut(s) 2497
Bpu14I TTCGAA 1 cut(s) 1765
BpuEI CTTGAG 2 cut(s) 491, 1156
BpuMI CCSGG 1 cut(s) 1997
Bsa29I ATCGAT 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 2906
BsaHI GRCGYC 1 cut(s) 1164
BsaJI CCNNGG 6 cut(s) 17, 436, 507, 960, 1785, 2955
BsaWI WCCGGW 1 cut(s) 891
Bsc4I CCNNNNNNNGG 8 cut(s) 311, 437, 509, 725, 1325, 1462, 1754, 2893
Bse1I ACTGG 8 cut(s) 224, 316, 984, 1059, 1453, 1525, 2035, 2949
Bse21I CCTNAGG 1 cut(s) 2996
Bse3DI GCAATG 1 cut(s) 2188
BseBI CCWGG 3 cut(s) 19, 1142, 2736
BseCI ATCGAT 1 cut(s) 130
BseDI CCNNGG 6 cut(s) 17, 436, 507, 960, 1785, 2955
BseGI GGATG 8 cut(s) 495, 956, 1150, 1241, 1781, 1907, 2508, 2995
BseLI CCNNNNNNNGG 8 cut(s) 311, 437, 509, 725, 1325, 1462, 1754, 2893
BseMI GCAATG 1 cut(s) 2188
BseMII CTCAG 3 cut(s) 1438, 2552, 3010
BseNI ACTGG 8 cut(s) 224, 316, 984, 1059, 1453, 1525, 2035, 2949
BseRI GAGGAG 3 cut(s) 56, 1957, 2321
BseXI GCAGC 8 cut(s) 984, 1185, 1464, 2219, 2301, 2566, 2749, 2810
BsgI GTGCAG 2 cut(s) 2300, 2768
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 4 cut(s) 585, 618, 729, 965
BshNI GGYRCC 3 cut(s) 1163, 1744, 2202
BshVI ATCGAT 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 678, 2954
BsiSI CCGG 3 cut(s) 892, 1997, 2200
BslFI GGGAC 1 cut(s) 3014
BslI CCNNNNNNNGG 8 cut(s) 311, 437, 509, 725, 1325, 1462, 1754, 2893
BsmAI GTCTC 3 cut(s) 1423, 2780, 3100
BsmFI GGGAC 1 cut(s) 3014
BsmI GAATGC 1 cut(s) 2183
BsnI GGCC 4 cut(s) 585, 618, 729, 965
Bsp119I TTCGAA 1 cut(s) 1765
Bsp1286I GDGCHC 2 cut(s) 678, 2954
Bsp1720I GCTNAGC 1 cut(s) 2497
BspACI CCGC 3 cut(s) 237, 720, 765
BspANI GGCC 4 cut(s) 585, 618, 729, 965
BspCNI CTCAG 3 cut(s) 1437, 2551, 3009
BspDI ATCGAT 1 cut(s) 130
BspHI TCATGA 2 cut(s) 10, 2401
BspLI GGNNCC 8 cut(s) 171, 295, 619, 1165, 1241, 1746, 2204, 3002
BspMAI CTGCAG 1 cut(s) 2800
BspMI ACCTGC 1 cut(s) 1710
BspPI GGATC 5 cut(s) 12, 1090, 1234, 1247, 2068
BspQI GCTCTTC 1 cut(s) 2772
BspT104I TTCGAA 1 cut(s) 1765
BspT107I GGYRCC 3 cut(s) 1163, 1744, 2202
BsrDI GCAATG 1 cut(s) 2188
BsrI ACTGG 8 cut(s) 224, 316, 984, 1059, 1453, 1525, 2035, 2949
BssECI CCNNGG 6 cut(s) 17, 436, 507, 960, 1785, 2955
BssNAI GTATAC 4 cut(s) 1356, 2083, 2921, 3014
BssNI GRCGYC 1 cut(s) 1164
BssSI CACGAG 1 cut(s) 2964
BssT1I CCWWGG 3 cut(s) 507, 960, 1785
Bst1107I GTATAC 4 cut(s) 1356, 2083, 2921, 3014
Bst2BI CACGAG 1 cut(s) 2964
Bst2UI CCWGG 3 cut(s) 19, 1142, 2736
Bst4CI ACNGT 3 cut(s) 2699, 2806, 3011
Bst6I CTCTTC 4 cut(s) 1853, 2772, 2778, 2856
BstACI GRCGYC 1 cut(s) 1164
BstAPI GCANNNNNTGC 1 cut(s) 400
BstBAI YACGTR 1 cut(s) 2906
BstBI TTCGAA 1 cut(s) 1765
BstC8I GCNNGC 2 cut(s) 1843, 2950
BstDEI CTNAG 8 cut(s) 329, 1373, 1424, 2189, 2497, 2538, 2888, 2996
BstF5I GGATG 8 cut(s) 495, 956, 1150, 1241, 1781, 1907, 2508, 2995
BstH2I RGCGCY 2 cut(s) 1167, 1779
BstHHI GCGC 3 cut(s) 405, 1166, 1778
BstMAI GTCTC 3 cut(s) 1423, 2780, 3100
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 6 cut(s) 400, 1554, 2238, 2771, 2798, 3029
BstNI CCWGG 3 cut(s) 19, 1142, 2736
BstNSI RCATGY 3 cut(s) 739, 1845, 2830
BstSCI CCNGG 4 cut(s) 17, 1140, 1995, 2734
BstSFI CTRYAG 4 cut(s) 1032, 1971, 2796, 2805
BstV1I GCAGC 8 cut(s) 984, 1185, 1464, 2219, 2301, 2566, 2749, 2810
BstV2I GAAGAC 2 cut(s) 1622, 2677
BstX2I RGATCY 6 cut(s) 4, 877, 886, 1239, 1642, 2220
BstXI CCANNNNNNTGG 1 cut(s) 1786
BstYI RGATCY 6 cut(s) 4, 877, 886, 1239, 1642, 2220
BstZ17I GTATAC 4 cut(s) 1356, 2083, 2921, 3014
Bsu15I ATCGAT 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 2996
BsuRI GGCC 4 cut(s) 585, 618, 729, 965
BsuTUI ATCGAT 1 cut(s) 130
BtsCI GGATG 8 cut(s) 495, 956, 1150, 1241, 1781, 1907, 2508, 2995
BtsI GCAGTG 2 cut(s) 1819, 2428
BtsIMutI CAGTG 3 cut(s) 309, 1819, 2428
BveI ACCTGC 1 cut(s) 1710
Cac8I GCNNGC 2 cut(s) 1843, 2950
CaiI CAGNNNCTG 2 cut(s) 2795, 2804
CciI TCATGA 2 cut(s) 10, 2401
CfoI GCGC 3 cut(s) 405, 1166, 1778
Cfr13I GGNCC 4 cut(s) 169, 333, 617, 3001
ClaI ATCGAT 1 cut(s) 130
CseI GACGC 2 cut(s) 1083, 2768
Csp6I GTAC 4 cut(s) 1745, 2117, 2256, 2590
CspCI CAANNNNNGTGG 4 cut(s) 489, 524, 1789, 1824
CviQI GTAC 4 cut(s) 1745, 2117, 2256, 2590
DdeI CTNAG 8 cut(s) 329, 1373, 1424, 2189, 2497, 2538, 2888, 2996
DinI GGCGCC 1 cut(s) 1165
DraI TTTAAA 2 cut(s) 40, 1713
EaeI YGGCCR 2 cut(s) 583, 963
Eam1104I CTCTTC 4 cut(s) 1853, 2772, 2778, 2856
EarI CTCTTC 4 cut(s) 1853, 2772, 2778, 2856
EciI GGCGGA 1 cut(s) 780
Eco130I CCWWGG 3 cut(s) 507, 960, 1785
Eco147I AGGCCT 1 cut(s) 729
Eco47I GGWCC 3 cut(s) 169, 333, 3001
Eco57I CTGAAG 2 cut(s) 803, 1499
Eco72I CACGTG 1 cut(s) 2906
Eco81I CCTNAGG 1 cut(s) 2996
EcoO109I RGGNCCY 1 cut(s) 3001
EcoRI GAATTC 3 cut(s) 1061, 1671, 2261
EcoRII CCWGG 3 cut(s) 17, 1140, 2734
EcoT14I CCWWGG 3 cut(s) 507, 960, 1785
EgeI GGCGCC 1 cut(s) 1165
EheI GGCGCC 1 cut(s) 1165
ErhI CCWWGG 3 cut(s) 507, 960, 1785
FalI AAGNNNNNCTT 4 cut(s) 586, 618, 2079, 2111
FaqI GGGAC 1 cut(s) 3014
FauI CCCGC 1 cut(s) 727
FbaI TGATCA 2 cut(s) 2098, 3039
FblI GTMKAC 5 cut(s) 1355, 1974, 2082, 2920, 3013
Fnu4HI GCNGC 9 cut(s) 238, 973, 1199, 1453, 2233, 2315, 2580, 2763, 2799
FokI GGATG 8 cut(s) 482, 943, 1157, 1248, 1768, 1914, 2495, 3002
Fsp4HI GCNGC 9 cut(s) 238, 973, 1199, 1453, 2233, 2315, 2580, 2763, 2799
FspBI CTAG 6 cut(s) 176, 464, 749, 920, 2780, 3110
GlaI GCGC 3 cut(s) 404, 1165, 1777
GluI GCNGC 9 cut(s) 238, 973, 1199, 1453, 2233, 2315, 2580, 2763, 2799
GsuI CTGGAG 2 cut(s) 2221, 2568
HaeII RGCGCY 2 cut(s) 1167, 1779
HaeIII GGCC 4 cut(s) 585, 618, 729, 965
HapII CCGG 3 cut(s) 892, 1997, 2200
HgaI GACGC 2 cut(s) 1083, 2768
HhaI GCGC 3 cut(s) 405, 1166, 1778
Hin1I GRCGYC 1 cut(s) 1164
Hin6I GCGC 3 cut(s) 403, 1164, 1776
HinP1I GCGC 3 cut(s) 403, 1164, 1776
HincII GTYRAC 2 cut(s) 1039, 1047
HindII GTYRAC 2 cut(s) 1039, 1047
HindIII AAGCTT 2 cut(s) 452, 595
HpaII CCGG 3 cut(s) 892, 1997, 2200
HphI GGTGA 5 cut(s) 294, 460, 1408, 1751, 2498
Hpy188I TCNGA 9 cut(s) 252, 283, 822, 1160, 1363, 1853, 2046, 2541, 2956
Hpy99I CGWCG 1 cut(s) 764
HpyCH4III ACNGT 3 cut(s) 2699, 2806, 3011
HpyCH4IV ACGT 4 cut(s) 567, 1311, 2115, 2905
HpyF10VI GCNNNNNNNGC 6 cut(s) 400, 1554, 2238, 2771, 2798, 3029
HpyF3I CTNAG 8 cut(s) 329, 1373, 1424, 2189, 2497, 2538, 2888, 2996
HpySE526I ACGT 4 cut(s) 567, 1311, 2115, 2905
Hsp92I GRCGYC 1 cut(s) 1164
HspAI GCGC 3 cut(s) 403, 1164, 1776
KasI GGCGCC 1 cut(s) 1163
KpnI GGTACC 1 cut(s) 1748
Ksp22I TGATCA 2 cut(s) 2098, 3039
LguI GCTCTTC 1 cut(s) 2772
LmnI GCTCC 6 cut(s) 673, 2046, 2240, 2587, 2797, 2957
Lsp1109I GCAGC 8 cut(s) 984, 1185, 1464, 2219, 2301, 2566, 2749, 2810
LweI GCATC 5 cut(s) 256, 504, 1509, 1892, 2618
MaeI CTAG 6 cut(s) 176, 464, 749, 920, 2780, 3110
MaeII ACGT 4 cut(s) 567, 1311, 2115, 2905
MaeIII GTNAC 2 cut(s) 908, 1927
MfeI CAATTG 2 cut(s) 967, 1268
MflI RGATCY 6 cut(s) 4, 877, 886, 1239, 1642, 2220
MhlI GDGCHC 2 cut(s) 678, 2954
MlsI TGGCCA 1 cut(s) 965
MluNI TGGCCA 1 cut(s) 965
Mly113I GGCGCC 1 cut(s) 1164
MlyI GAGTC 5 cut(s) 164, 194, 1970, 2499, 2534
MmeI TCCRAC 1 cut(s) 1771
Mox20I TGGCCA 1 cut(s) 965
MroXI GAANNNNTTC 3 cut(s) 83, 517, 928
MscI TGGCCA 1 cut(s) 965
MseI TTAA 9 cut(s) 39, 657, 702, 1119, 1127, 1214, 1712, 2225, 2721
MslI CAYNNNNRTG 4 cut(s) 2484, 2844, 2906, 2908
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 1477
MspI CCGG 3 cut(s) 892, 1997, 2200
MspR9I CCNGG 4 cut(s) 19, 1142, 1997, 2736
MunI CAATTG 2 cut(s) 967, 1268
Mva1269I GAATGC 1 cut(s) 2183
MvaI CCWGG 3 cut(s) 19, 1142, 2736
MwoI GCNNNNNNNGC 6 cut(s) 400, 1554, 2238, 2771, 2798, 3029
NarI GGCGCC 1 cut(s) 1164
NciI CCSGG 1 cut(s) 1997
NlaIV GGNNCC 8 cut(s) 171, 295, 619, 1165, 1241, 1746, 2204, 3002
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 3 cut(s) 739, 1845, 2830
NspV TTCGAA 1 cut(s) 1765
OliI CACNNNNGTG 2 cut(s) 2906, 2908
PaeI GCATGC 1 cut(s) 1845
PagI TCATGA 2 cut(s) 10, 2401
PceI AGGCCT 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 2772
PcsI WCGNNNNNNNCGW 1 cut(s) 2598
PctI GAATGC 1 cut(s) 2183
PdmI GAANNNNTTC 3 cut(s) 83, 517, 928
PfeI GAWTC 6 cut(s) 370, 1582, 2037, 2092, 2641, 2960
PflMI CCANNNNNTGG 1 cut(s) 1325
PfoI TCCNGGA 1 cut(s) 1995
PkrI GCNGC 9 cut(s) 239, 974, 1200, 1454, 2234, 2316, 2581, 2764, 2800
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 5 cut(s) 163, 194, 1970, 2499, 2533
PluTI GGCGCC 1 cut(s) 1167
PmaCI CACGTG 1 cut(s) 2906
PmlI CACGTG 1 cut(s) 2906
PpsI GAGTC 5 cut(s) 163, 194, 1970, 2499, 2533
Ppu21I YACGTR 1 cut(s) 2906
PpuMI RGGWCCY 1 cut(s) 3001
PsiI TTATAA 1 cut(s) 953
Psp1406I AACGTT 1 cut(s) 1311
Psp5II RGGWCCY 1 cut(s) 3001
Psp6I CCWGG 3 cut(s) 17, 1140, 2734
PspCI CACGTG 1 cut(s) 2906
PspGI CCWGG 3 cut(s) 17, 1140, 2734
PspN4I GGNNCC 8 cut(s) 171, 295, 619, 1165, 1241, 1746, 2204, 3002
PspPI GGNCC 4 cut(s) 169, 333, 617, 3001
PspPPI RGGWCCY 1 cut(s) 3001
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstI CTGCAG 1 cut(s) 2800
PstNI CAGNNNCTG 2 cut(s) 2795, 2804
PsuI RGATCY 6 cut(s) 4, 877, 886, 1239, 1642, 2220
PvuI CGATCG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 1477
RsaI GTAC 4 cut(s) 1746, 2118, 2257, 2591
RsaNI GTAC 4 cut(s) 1745, 2117, 2256, 2590
RseI CAYNNNNRTG 4 cut(s) 2484, 2844, 2906, 2908
SapI GCTCTTC 1 cut(s) 2772
SaqAI TTAA 9 cut(s) 39, 657, 702, 1119, 1127, 1214, 1712, 2225, 2721
SatI GCNGC 9 cut(s) 238, 973, 1199, 1453, 2233, 2315, 2580, 2763, 2799
Sau96I GGNCC 4 cut(s) 169, 333, 617, 3001
SchI GAGTC 5 cut(s) 164, 194, 1970, 2499, 2534
ScrFI CCNGG 4 cut(s) 19, 1142, 1997, 2736
SduI GDGCHC 2 cut(s) 678, 2954
SfaNI GCATC 5 cut(s) 256, 504, 1509, 1892, 2618
SfcI CTRYAG 4 cut(s) 1032, 1971, 2796, 2805
SfoI GGCGCC 1 cut(s) 1165
SfuI TTCGAA 1 cut(s) 1765
SinI GGWCC 3 cut(s) 169, 333, 3001
SmiMI CAYNNNNRTG 4 cut(s) 2484, 2844, 2906, 2908
SmlI CTYRAG 2 cut(s) 470, 1135
SmoI CTYRAG 2 cut(s) 470, 1135
SphI GCATGC 1 cut(s) 1845
SseBI AGGCCT 1 cut(s) 729
SsiI CCGC 3 cut(s) 237, 720, 765
SspDI GGCGCC 1 cut(s) 1163
SspI AATATT 3 cut(s) 1486, 2365, 2931
SspMI CTAG 6 cut(s) 176, 464, 749, 920, 2780, 3110
StuI AGGCCT 1 cut(s) 729
StyD4I CCNGG 4 cut(s) 17, 1140, 1995, 2734
StyI CCWWGG 3 cut(s) 507, 960, 1785
TaaI ACNGT 3 cut(s) 2699, 2806, 3011
TaiI ACGT 4 cut(s) 570, 1314, 2118, 2908
TaqI TCGA 6 cut(s) 130, 339, 384, 1281, 1765, 3046
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 6 cut(s) 370, 1582, 2037, 2092, 2641, 2960
Tru1I TTAA 9 cut(s) 39, 657, 702, 1119, 1127, 1214, 1712, 2225, 2721
Tru9I TTAA 9 cut(s) 39, 657, 702, 1119, 1127, 1214, 1712, 2225, 2721
TscAI CASTG 3 cut(s) 316, 1819, 2435
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 8 cut(s) 972, 1198, 1452, 2232, 2314, 2579, 2762, 2798
Tsp45I GTSAC 1 cut(s) 908
TspGWI ACGGA 2 cut(s) 182, 2118
TspRI CASTG 3 cut(s) 316, 1819, 2435
Van91I CCANNNNNTGG 1 cut(s) 1325
VpaK11BI GGWCC 3 cut(s) 169, 333, 3001
XapI RAATTY 7 cut(s) 146, 1061, 1527, 1671, 1826, 1865, 2261
XceI RCATGY 3 cut(s) 739, 1845, 2830
XcmI CCANNNNNNNNNTGG 1 cut(s) 3099
XmiI GTMKAC 5 cut(s) 1355, 1974, 2082, 2920, 3013
XmnI GAANNNNTTC 3 cut(s) 83, 517, 928
XspI CTAG 6 cut(s) 176, 464, 749, 920, 2780, 3110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.