Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

46981834 .. 46982906

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0352800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGATCGACGTTCTTCTCTCGAACCATACGTCGAACGACGACCACGGCCACGGCCACGGCCTATCAGCTTCCTGACGATCAGATCGCCGAATTCAAGCATGCTTTCAGCCTTTTGGACAAGGACGGGGACGGTTCCATCACTACCAAAGAGCTCGGCACTGTGATGCGCTCACTCGGTCAGAAGCCAACTGAAGAAGAACTCGAGGTGATGATTAAAGAGGTCGACGTAGATGGAAACGGTAGGATTGATTTCCAAGAGTTCGTTAACCTAATGGCCCGGAAGATGCAGGACACTCTCACAGAGGACCAGCTCAAGGAAGCGTTTCGGGTTTTCGATAAGGACCAGAATGGCTTCATTTCTGCCGATGAGCTTCGTCATGTTATGACGAGCCTCGGCGAGACGCTGACGGATGAGCAGGTTAATCAGATGGTTCGTGAAGCTGATATGGACGGTGATGGACAAATCAACTATAAGGAGTTTGTGAAGGTCATGATGGCCAAGAAAGTACATAGCCGGAGCCTCGAGCATTGTAGCAGTGGTTCTAGTAAGGGTCACAAGCCTAAGAAACTCCGTTGTAGAGAGCGTGTACGCCAATGTTTCTACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

203

Amino Acids

23.17

Weight (kDa)

5.8

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIF-1	PF21008	27 - 97	5.1e-06	Allograft inflammatory factor 1
EF-hand_1	PF00036	31 - 59	4e-07	EF hand domain
EF-hand_6	PF13405	31 - 60	6.4e-08	EF-hand domain
EF-hand_7	PF13499	32 - 92	3.5e-18	EF-hand domain pair
EF-hand_9	PF14658	34 - 94	4.7e-07	EF-hand domain
EF-hand_8	PF13833	44 - 94	9.8e-11	EF-hand domain pair
EF-hand_1	PF00036	67 - 94	1.5e-08	EF hand domain
EF-hand_7	PF13499	102 - 166	6e-19	EF-hand domain pair
AIF-1	PF21008	103 - 170	1e-05	Allograft inflammatory factor 1
EF-hand_6	PF13405	104 - 133	7.4e-10	EF-hand domain
EF-hand_1	PF00036	105 - 132	1.8e-09	EF hand domain
EF-hand_5	PF13202	105 - 129	5.2e-07	EF hand
EF-hand_9	PF14658	107 - 167	4.5e-06	EF-hand domain
EF-hand_8	PF13833	118 - 165	6.1e-11	EF-hand domain pair
EF-hand_1	PF00036	141 - 167	3.3e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	3 cut(s)	48, 54, 498
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	510, 591
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	5 cut(s)	70, 154, 313, 373, 443
AluI	AGCT	5 cut(s)	70, 154, 313, 373, 443
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	2 cut(s)	203, 524
AoxI	GGCC	5 cut(s)	48, 54, 60, 276, 498
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	2 cut(s)	324, 353
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	277, 307, 343
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	220, 467
AvaI	CYCGRG	2 cut(s)	203, 524
AvaII	GGWCC	2 cut(s)	307, 343
BalI	TGGCCA	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	5 cut(s)	146, 227, 424, 452, 490
BceAI	ACGGC	3 cut(s)	63, 69, 75
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	546, 610
BfuAI	ACCTGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	307, 343
BmeT110I	CYCGRG	2 cut(s)	203, 524
BmgT120I	GGNCC	3 cut(s)	277, 307, 343
BmiI	GGNNCC	2 cut(s)	136, 521
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	156, 276
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	45, 51, 57, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	45, 51, 57, 394
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	316
BshFI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	2 cut(s)	203, 524
BsiSI	CCGG	2 cut(s)	280, 517
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BsoBI	CYCGRG	2 cut(s)	203, 524
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	5, 79, 84
BspANI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	136, 521
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	13
BssECI	CCNNGG	4 cut(s)	45, 51, 57, 394
BssMI	GATC	3 cut(s)	5, 79, 84
Bst4CI	ACNGT	4 cut(s)	134, 163, 242, 455
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	3 cut(s)	45, 51, 57
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	8, 82, 87
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	5, 79, 84
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	278
BsuRI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BtgI	CCRYGG	3 cut(s)	45, 51, 57
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	159, 544
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	277, 307, 343
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	509, 590
CviAII	CATG	3 cut(s)	101, 380, 493
CviQI	GTAC	2 cut(s)	509, 590
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	3 cut(s)	7, 81, 86
DpnII	GATC	3 cut(s)	5, 79, 84
EaeI	YGGCCR	3 cut(s)	48, 54, 498
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	307, 343
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	203, 524
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	3 cut(s)	104, 383, 496
FaiI	YATR	8 cut(s)	29, 102, 381, 386, 449, 474, 494, 513
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	100, 379, 492
FblI	GTMKAC	1 cut(s)	225
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	546, 610
GlaI	GCGC	1 cut(s)	170
HaeIII	GGCC	5 cut(s)	50, 56, 62, 278, 500
HapII	CCGG	2 cut(s)	280, 517
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	104, 383, 496
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	226, 268
HindII	GTYRAC	2 cut(s)	226, 268
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	280, 517
HphI	GGTGA	2 cut(s)	220, 467
Hpy166II	GTNNAC	3 cut(s)	226, 268, 590
Hpy188I	TCNGA	3 cut(s)	84, 183, 429
Hpy188III	TCNNGA	4 cut(s)	21, 74, 437, 493
Hpy8I	GTNNAC	3 cut(s)	226, 268, 590
Hpy99I	CGWCG	4 cut(s)	13, 36, 43, 230
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	4 cut(s)	134, 163, 242, 455
HpyCH4IV	ACGT	3 cut(s)	11, 31, 228
HpyCH4V	TGCA	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	3 cut(s)	11, 31, 228
Hsp92II	CATG	3 cut(s)	104, 383, 496
HspAI	GCGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	5, 79, 84
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	7 cut(s)	87, 275, 293, 323, 359, 404, 530
LweI	GCATC	2 cut(s)	156, 276
MaeI	CTAG	2 cut(s)	546, 610
MaeII	ACGT	3 cut(s)	11, 31, 228
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	3 cut(s)	7, 81, 86
MboI	GATC	3 cut(s)	5, 79, 84
MboII	GAAGA	4 cut(s)	7, 206, 209, 295
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	500
MnlI	CCTC	5 cut(s)	199, 214, 298, 404, 533
Mox20I	TGGCCA	1 cut(s)	500
MroXI	GAANNNNTTC	2 cut(s)	324, 353
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	3 cut(s)	216, 267, 423
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	500
MspI	CCGG	2 cut(s)	280, 517
MspR9I	CCNGG	1 cut(s)	280
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	3 cut(s)	5, 79, 84
NlaIII	CATG	3 cut(s)	104, 383, 496
NlaIV	GGNNCC	2 cut(s)	136, 521
NmeAIII	GCCGAG	2 cut(s)	135, 375
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PaeR7I	CTCGAG	2 cut(s)	203, 524
PagI	TCATGA	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdmI	GAANNNNTTC	2 cut(s)	324, 353
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	136, 521
PspPI	GGNCC	3 cut(s)	277, 307, 343
PspXI	VCTCGAGB	2 cut(s)	203, 524
PsrI	GAACNNNNNNTAC	2 cut(s)	526, 558
RsaI	GTAC	2 cut(s)	510, 591
RsaNI	GTAC	2 cut(s)	509, 590
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	216, 267, 423
Sau3AI	GATC	3 cut(s)	5, 79, 84
Sau96I	GGNCC	3 cut(s)	277, 307, 343
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	156, 276
Sfr274I	CTCGAG	2 cut(s)	203, 524
SinI	GGWCC	2 cut(s)	307, 343
SlaI	CTCGAG	2 cut(s)	203, 524
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	3 cut(s)	203, 314, 524
SmoI	CTYRAG	3 cut(s)	203, 314, 524
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	2 cut(s)	546, 610
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	4 cut(s)	134, 163, 242, 455
TaiI	ACGT	3 cut(s)	14, 34, 231
TaqI	TCGA	7 cut(s)	8, 22, 34, 204, 225, 336, 525
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	508
Tru1I	TTAA	3 cut(s)	216, 267, 423
Tru9I	TTAA	3 cut(s)	216, 267, 423
TscAI	CASTG	2 cut(s)	166, 544
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	2 cut(s)	425, 563
TspRI	CASTG	2 cut(s)	166, 544
VpaK11BI	GGWCC	2 cut(s)	307, 343
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	104
XhoI	CTCGAG	2 cut(s)	203, 524
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	2 cut(s)	324, 353
XspI	CTAG	2 cut(s)	546, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.