RLG00000030021
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
53415867 .. 53428404
12538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030021

Sequence Viewer

Length: 3027 bp
ATGTTTATTGCCAGTCAAGAGAAGTTTCATGCCGAGGTAGACAAGAACTACTGGAATGCAGTTGCAGATCTCATTCCCAATCAGGTGCTAGCCATAGAGAAGAAGAGACGGAAGAAGGATAAGGAAAAGAAGCCTTCCATTGTCGCTGTGCAAGGTCCAAAGCCTGGCCATGATCTGCACGGCACCATATCACCTTATATTGGCAACCTCTCCTTTCTTAGGTTTCTCAACCTTCGAAACAACAGCTTCTCTGGCAAAATTCCACAACAAGTTGATCATTTGTTCCGACTGCGGCATCTAAATATCAGTACCAACATATTGGAGGGGGGAGTTCCAGTCAACCTAACTTTCTGCCCCGAACTGAGGATCATAAGCATTGGATCAAACCGCCTTACCGGCAAAATTCCGCCAGATATTGGCTTATTGATGAAGCTCGTGTTTCTCAGTCTTCAGAAAAACAATCTGACAGGTGGCATCCCACCTTCCTTGGGAAATCTTTCATCAATCACACAACTTTCCTTAAGCAATAACAATCTGGTGGGCAACGTTCCAGAGGAGATTGGCCGATTGACAAGCTTATCTTATTTTTCAATTGGTCCCAATAACCTCTCCGGTACGATACCTCCCTCCCTTTTTAACATATCATCTATGAACGTCTTCACAATTGCAGTGAATAATTTCAAGGGCAGTATTCCGCCTGATATAGGCCTGAATATGCCTAATCTCCAAGCTTTTGAAATTGGTGGAAATCAGTTATCTGGACAAATCCCAACTTCATTTGCCAATGCTTCTCAGCTTCAAACACTTGATATGTCACATAACTATTTTGTGGGGCAAATTCCTAAAATTTTTGGGTATCTTTTAGAACTACAATGGCTCGGTCTAAGTTCCAACAACCTAGGATATTATTCAGCCAATGACCTGGATTTTATTACATCCCTGACAAATTGCAGCAAACTAAAAATTCTTAGTTTGGCTACCAACAAATTTGGGGGTGTTTTACCAAACTCTTTAGCCAATCTATCAACCCATCTAAGTCACTTATACCTTGGGAGCAATAGAATATCAGGAATCATTCCTGCAACTCTAGAGAATCTTTGCAATTTATTTGCCTTGGGCTTGAATGGAAACATGTTCACAGGTGCCATTCCTACCTCAGTTGGGAAATTACAACGCCTGCAGCGATTAGGTTTACATGAGAACAGATTATCTGGCCACATCCCATCTTCCATAGGAAACCTCACTCAATTATTTCAACTCTACGTATCAGCAAATGAATTAGAAGGAAGCATTCCTCCAAGTATTGGAAACTGCCAGAGTTTGCAGGAGATGGAGATATCACATAATAGGCTTAGTGGAGATATACCACCACAGGTTTTTAGTATCTTCCCACTTGCCTATCTCAACTTATCTCTAAACTCACTAAACGGCACCCTAGCTGCGGAAGTGGGTAAGCTGAAGAATATCTATGCACTGGACATCAATGAAAACAATTTGACTGGACAAATTCCAGACGTTATTGGAGACTGTGTGTACCTTGAATATCTTTACCTACAAGCCAATCTCTTTGAAGGTAAGGTACCTTCATCTTTGGTTTTATTGAGAGGTCTTCAGCAGTTAGATCTATCACAAAACAATTTGTCAGGACAAATTCCAAAGGACCTACAGAGACTTCCATACCTGCTATATTTGAACATTTCTTTCAATAATCTGGAGGGTGAGGTGCCAAAAGAAGGAGCTTTTCGAAACAAAAGTGCAATATCATTGGTCGGGAATAAAAAACTTTGTGGTGGTGTTTCGGAATTACAGCTACCAACATGCCCGGTAAATGCATCAAAGAAGAGAAAGGCACATGGTTTCATACTGAAGTTCACGATTTCTTTTGTTGCTGGATGCTCTCTTCTGTTTGCATTTTTATTTGTTCTTTGTTGGAGGAGAAAACAGAAGAAGAAATCATTATCTATAGACTCATCAATCAGTTTCCTTTCCAGGATTTCATATCAGGCACTTCATCAAGCTACCAGTGGATTCTCCCCAAGCATGCTGATCGGATCAGGTGGTTTTGGTTCTGTATACAAAGGGATTCTTGATCAGGAAGAAAATAACGTAGTTGCCATAAAGGTCCTCAACCTTCAACGGAGAGGAGCTTCCAAGAGTTTCACATCAGAATGCAATGCACTGAGAAATATCCGGCACAGAAATCTTGTGAAGATCCTAACATGTTGCTCCAGCATGGATCACAATGGTAATGAATTCAACGCTCTAGTTTTTGAATATATGTCAAAAGGAAGCTTAGAGGAGTGGCTGCACAGTGAAGACCAATTAAGAATCTTGAACCTTCTTCAAAGATTGAACGTTGCTGTTGACGTAGCTTCTGCATTATGTTATCTTCATGACCATTGTGAACCACAAATCATTCATCGTGACATGAAGCCAAGTAATGTTCTTCTCGACGATGACATGGTTGCTCATGTTGGTGATTTTGGGTTAGCAAGACTCATCATGGACTCCTCTCAAAATCAAAGTAGCACAGTTGGAATAAAGGGAACCATCGGTTATGCAGCTCCAGAGTATGCAAATAGTGTGGAGGCATCAAAACAAGGAGATGTATATAGTTATGGGATCCTTGTATTGGAAATGTTCACAAGAAGACGGCCCATCGACGAATTGTTCAAAGACGATTTGAATCTCCACAACTTTGTTAAGACGGCCATACCTAGAAGACTTGTGCAAATTGTGGATCCTACTCTTTTAGAAGAGACAGCAACTACAGCAACAGAAAATGAAGTGACCAACATGAGTGGTTACAAGAACGAAATTGAAGCAGAAGAACAAAACACTGACTCTGAGAATTTGAATGCTTATCTGTGGAACTGTATTTTTCCTATCCTTAAGATTGGACTGGCATGCTCGGAAGAATTACCAAGGAATAGAATGTCCATGGAGAATGTACACAAGGACCTACACCATATAGTAAAAGCTTACAATAGTGCTAAGATCCGTCAAGAGAGACCAAGAAGAAGATAG

Protein Analysis

1009

Amino Acids

111.54

Weight (kDa)

8.57

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 225 - 275 5e-06 Leucine rich repeat
LRR_8 PF13855 319 - 378 1e-05 Leucine rich repeat
LRR_14 PF23598 362 - 448 7.7e-11 Leucine-rich repeat region
LRR_14 PF23598 460 - 572 4.6e-07 Leucine-rich repeat region
Pkinase PF00069 681 - 900 4.1e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 683 - 890 2.1e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1689
Acc65I GGTACC 1 cut(s) 1579
AccB1I GGYRCC 5 cut(s) 182, 1142, 1430, 1579, 1723
AccB7I CCANNNNNTGG 3 cut(s) 164, 416, 1304
AccI GTMKAC 2 cut(s) 39, 2073
AciI CCGC 5 cut(s) 292, 388, 407, 695, 1442
AclI AACGTT 2 cut(s) 546, 2355
AcoI YGGCCR 4 cut(s) 166, 562, 1213, 2709
AcuI CTGAAG 4 cut(s) 434, 1478, 1595, 1886
AfaI GTAC 5 cut(s) 310, 616, 1535, 1581, 2952
AflII CTTAAG 2 cut(s) 520, 2891
AflIII ACRYGT 2 cut(s) 1131, 2219
AjnI CCWGG 3 cut(s) 163, 921, 1988
Alw26I GTCTC 5 cut(s) 100, 1518, 1663, 2753, 3004
AoxI GGCC 6 cut(s) 166, 562, 706, 1213, 2654, 2709
ApeKI GCWGC 5 cut(s) 951, 1180, 1439, 2305, 2561
Asp700I GAANNNNTTC 3 cut(s) 496, 656, 677
Asp718I GGTACC 1 cut(s) 1579
AspA2I CCTAGG 1 cut(s) 898
AspS9I GGNCC 6 cut(s) 155, 596, 1660, 2122, 2655, 2959
AsuC2I CCSGG 1 cut(s) 1823
AsuHPI GGTGA 3 cut(s) 183, 1730, 2489
AsuII TTCGAA 2 cut(s) 235, 1744
AsuNHI GCTAGC 1 cut(s) 88
AvaII GGWCC 5 cut(s) 155, 596, 1660, 2122, 2959
AvrII CCTAGG 1 cut(s) 898
BalI TGGCCA 2 cut(s) 168, 1215
BamHI GGATCC 2 cut(s) 2622, 2740
BanI GGYRCC 5 cut(s) 182, 1142, 1430, 1579, 1723
BarI GAAGNNNNNNTAC 4 cut(s) 1563, 1567, 1595, 1599
BauI CACGAG 1 cut(s) 434
BbsI GAAGAC 6 cut(s) 440, 649, 1601, 2322, 2656, 2728
BbvI GCAGC 5 cut(s) 963, 1192, 1426, 2292, 2573
BccI CCATC 5 cut(s) 1038, 1231, 1324, 2558, 2666
BceAI ACGGC 4 cut(s) 196, 1444, 2669, 2724
BcgI CGANNNNNNTGC 2 cut(s) 2029, 2063
BciT130I CCWGG 3 cut(s) 165, 923, 1990
BclI TGATCA 2 cut(s) 274, 2089
BcnI CCSGG 1 cut(s) 1823
BcoDI GTCTC 5 cut(s) 100, 1518, 1663, 2753, 3004
BfaI CTAG 6 cut(s) 89, 899, 1088, 1436, 2264, 2718
BfmI CTRYAG 4 cut(s) 1178, 1664, 1962, 2769
BfrI CTTAAG 2 cut(s) 520, 2891
BfuAI ACCTGC 1 cut(s) 1689
BglI GCCNNNNNGGC 1 cut(s) 396
BglII AGATCT 2 cut(s) 67, 1621
BisI GCNGC 6 cut(s) 293, 952, 1181, 1440, 2306, 2562
BlnI CCTAGG 1 cut(s) 898
BlsI GCNGC 6 cut(s) 294, 953, 1182, 1441, 2307, 2563
Bme1390I CCNGG 4 cut(s) 165, 923, 1823, 1990
Bme18I GGWCC 5 cut(s) 155, 596, 1660, 2122, 2959
BmgT120I GGNCC 6 cut(s) 155, 596, 1660, 2122, 2655, 2959
BmiI GGNNCC 9 cut(s) 184, 598, 1144, 1432, 1581, 1725, 2548, 2624, 2742
BmrFI CCNGG 4 cut(s) 165, 923, 1823, 1990
BmsI GCATC 5 cut(s) 304, 483, 1841, 1883, 2600
BmtI GCTAGC 1 cut(s) 92
BpiI GAAGAC 6 cut(s) 440, 649, 1601, 2322, 2656, 2728
BpmI CTGGAG 3 cut(s) 1733, 2212, 2550
Bpu14I TTCGAA 2 cut(s) 235, 1744
BpuMI CCSGG 1 cut(s) 1823
BsaAI YACGTR 1 cut(s) 1264
BsaBI GATNNNNATC 1 cut(s) 2685
BsaI GGTCTC 1 cut(s) 3004
BsaJI CCNNGG 7 cut(s) 33, 486, 898, 1048, 1113, 2924, 2940
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 6 cut(s) 321, 351, 607, 637, 1515, 1545
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 7 cut(s) 12, 56, 335, 1479, 1504, 2022, 2907
Bse3DI GCAATG 1 cut(s) 2179
Bse8I GATNNNNATC 1 cut(s) 2685
BseBI CCWGG 3 cut(s) 165, 923, 1990
BseDI CCNNGG 7 cut(s) 33, 486, 898, 1048, 1113, 2924, 2940
BseGI GGATG 4 cut(s) 474, 935, 1218, 1898
BseJI GATNNNNATC 1 cut(s) 2685
BseMI GCAATG 1 cut(s) 2179
BseMII CTCAG 6 cut(s) 353, 457, 806, 1170, 2171, 2838
BseNI ACTGG 7 cut(s) 12, 56, 335, 1479, 1504, 2022, 2907
BseRI GAGGAG 5 cut(s) 569, 1948, 2157, 2312, 2500
BseXI GCAGC 5 cut(s) 963, 1192, 1426, 2292, 2573
BsgI GTGCAG 2 cut(s) 161, 2291
BshFI GGCC 6 cut(s) 168, 564, 708, 1215, 2656, 2711
BshNI GGYRCC 5 cut(s) 182, 1142, 1430, 1579, 1723
BsiSI CCGG 4 cut(s) 396, 612, 1823, 2191
BslFI GGGAC 1 cut(s) 582
BsmAI GTCTC 5 cut(s) 100, 1518, 1663, 2753, 3004
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 4 cut(s) 61, 1290, 2174, 2863
BsnI GGCC 6 cut(s) 168, 564, 708, 1215, 2656, 2711
Bso31I GGTCTC 1 cut(s) 3004
Bsp119I TTCGAA 2 cut(s) 235, 1744
Bsp1407I TGTACA 1 cut(s) 2950
Bsp19I CCATGG 1 cut(s) 2940
BspACI CCGC 5 cut(s) 292, 388, 407, 695, 1442
BspANI GGCC 6 cut(s) 168, 564, 708, 1215, 2656, 2711
BspCNI CTCAG 6 cut(s) 354, 456, 805, 1169, 2172, 2839
BspHI TCATGA 1 cut(s) 2392
BspLI GGNNCC 9 cut(s) 184, 598, 1144, 1432, 1581, 1725, 2548, 2624, 2742
BspMAI CTGCAG 1 cut(s) 1182
BspMI ACCTGC 1 cut(s) 1689
BspOI GCTAGC 1 cut(s) 92
BspT104I TTCGAA 2 cut(s) 235, 1744
BspT107I GGYRCC 5 cut(s) 182, 1142, 1430, 1579, 1723
BspTI CTTAAG 2 cut(s) 520, 2891
BspTNI GGTCTC 1 cut(s) 3004
BsrDI GCAATG 1 cut(s) 2179
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 2950
BsrI ACTGG 7 cut(s) 12, 56, 335, 1479, 1504, 2022, 2907
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 7 cut(s) 33, 486, 898, 1048, 1113, 2924, 2940
BssNAI GTATAC 1 cut(s) 2074
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 6 cut(s) 486, 898, 1048, 1113, 2924, 2940
Bst1107I GTATAC 1 cut(s) 2074
Bst2BI CACGAG 1 cut(s) 434
Bst2UI CCWGG 3 cut(s) 165, 923, 1990
Bst4CI ACNGT 4 cut(s) 1529, 2312, 2533, 2876
Bst6I CTCTTC 4 cut(s) 98, 1835, 1905, 2751
BstAFI CTTAAG 2 cut(s) 520, 2891
BstAUI TGTACA 1 cut(s) 2950
BstBAI YACGTR 1 cut(s) 1264
BstBI TTCGAA 2 cut(s) 235, 1744
BstC8I GCNNGC 4 cut(s) 90, 1178, 2042, 2908
BstDSI CCRYGG 1 cut(s) 2940
BstENI CCTNNNNNAGG 2 cut(s) 217, 702
BstF5I GGATG 4 cut(s) 474, 935, 1218, 1898
BstMAI GTCTC 5 cut(s) 100, 1518, 1663, 2753, 3004
BstMWI GCNNNNNNNGC 3 cut(s) 252, 396, 2771
BstNI CCWGG 3 cut(s) 165, 923, 1990
BstNSI RCATGY 5 cut(s) 1135, 1821, 2044, 2223, 2910
BstSCI CCNGG 4 cut(s) 163, 921, 1821, 1988
BstSFI CTRYAG 4 cut(s) 1178, 1664, 1962, 2769
BstSNI TACGTA 1 cut(s) 1264
BstV1I GCAGC 5 cut(s) 963, 1192, 1426, 2292, 2573
BstV2I GAAGAC 6 cut(s) 440, 649, 1601, 2322, 2656, 2728
BstX2I RGATCY 6 cut(s) 67, 1621, 2211, 2622, 2740, 2997
BstXI CCANNNNNNTGG 2 cut(s) 319, 922
BstYI RGATCY 6 cut(s) 67, 1621, 2211, 2622, 2740, 2997
BstZ17I GTATAC 1 cut(s) 2074
BsuRI GGCC 6 cut(s) 168, 564, 708, 1215, 2656, 2711
BtgI CCRYGG 1 cut(s) 2940
BtsCI GGATG 4 cut(s) 474, 935, 1218, 1898
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 6 cut(s) 675, 1472, 2029, 2177, 2317, 2838
BveI ACCTGC 1 cut(s) 1689
Cac8I GCNNGC 4 cut(s) 90, 1178, 2042, 2908
CciI TCATGA 1 cut(s) 2392
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 6 cut(s) 155, 596, 1660, 2122, 2655, 2959
Csp6I GTAC 5 cut(s) 309, 615, 1534, 1580, 2951
CspCI CAANNNNNGTGG 6 cut(s) 468, 503, 2565, 2600, 2782, 2817
CviQI GTAC 5 cut(s) 309, 615, 1534, 1580, 2951
EaeI YGGCCR 4 cut(s) 166, 562, 1213, 2709
Eam1104I CTCTTC 4 cut(s) 98, 1835, 1905, 2751
EarI CTCTTC 4 cut(s) 98, 1835, 1905, 2751
EciI GGCGGA 2 cut(s) 396, 684
Eco105I TACGTA 1 cut(s) 1264
Eco130I CCWWGG 6 cut(s) 486, 898, 1048, 1113, 2924, 2940
Eco147I AGGCCT 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 3004
Eco32I GATATC 1 cut(s) 1338
Eco47I GGWCC 5 cut(s) 155, 596, 1660, 2122, 2959
Eco57I CTGAAG 4 cut(s) 434, 1478, 1595, 1886
EcoNI CCTNNNNNAGG 2 cut(s) 217, 702
EcoO109I RGGNCCY 3 cut(s) 1660, 2122, 2959
EcoRI GAATTC 1 cut(s) 2252
EcoRII CCWGG 3 cut(s) 163, 921, 1988
EcoRV GATATC 1 cut(s) 1338
EcoT14I CCWWGG 6 cut(s) 486, 898, 1048, 1113, 2924, 2940
EcoT22I ATGCAT 1 cut(s) 1834
ErhI CCWWGG 6 cut(s) 486, 898, 1048, 1113, 2924, 2940
Esp3I CGTCTC 1 cut(s) 100
FalI AAGNNNNNCTT 4 cut(s) 565, 597, 2070, 2102
FaqI GGGAC 1 cut(s) 582
FbaI TGATCA 2 cut(s) 274, 2089
FblI GTMKAC 2 cut(s) 39, 2073
Fnu4HI GCNGC 6 cut(s) 293, 952, 1181, 1440, 2306, 2562
FokI GGATG 4 cut(s) 461, 922, 1205, 1905
Fsp4HI GCNGC 6 cut(s) 293, 952, 1181, 1440, 2306, 2562
FspBI CTAG 6 cut(s) 89, 899, 1088, 1436, 2264, 2718
GluI GCNGC 6 cut(s) 293, 952, 1181, 1440, 2306, 2562
GsuI CTGGAG 3 cut(s) 1733, 2212, 2550
HaeIII GGCC 6 cut(s) 168, 564, 708, 1215, 2656, 2711
HapII CCGG 4 cut(s) 396, 612, 1823, 2191
HincII GTYRAC 2 cut(s) 340, 2365
HindII GTYRAC 2 cut(s) 340, 2365
HindIII AAGCTT 4 cut(s) 574, 729, 2290, 2979
HpaII CCGG 4 cut(s) 396, 612, 1823, 2191
HphI GGTGA 3 cut(s) 183, 1730, 2489
Hpy188I TCNGA 8 cut(s) 287, 453, 465, 1801, 2051, 2167, 2848, 2914
Hpy99I CGWCG 2 cut(s) 2456, 2666
HpyCH4III ACNGT 4 cut(s) 1529, 2312, 2533, 2876
HpyCH4IV ACGT 7 cut(s) 546, 654, 1263, 1515, 2106, 2355, 2367
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 396, 2771
HpySE526I ACGT 7 cut(s) 546, 654, 1263, 1515, 2106, 2355, 2367
KpnI GGTACC 1 cut(s) 1583
Ksp22I TGATCA 2 cut(s) 274, 2089
LmnI GCTCC 5 cut(s) 1053, 1736, 2144, 2231, 2569
Lsp1109I GCAGC 5 cut(s) 963, 1192, 1426, 2292, 2573
LweI GCATC 5 cut(s) 304, 483, 1841, 1883, 2600
MaeI CTAG 6 cut(s) 89, 899, 1088, 1436, 2264, 2718
MaeII ACGT 7 cut(s) 546, 654, 1263, 1515, 2106, 2355, 2367
MaeIII GTNAC 5 cut(s) 813, 1037, 2423, 2788, 2804
MfeI CAATTG 2 cut(s) 591, 663
MflI RGATCY 6 cut(s) 67, 1621, 2211, 2622, 2740, 2997
MlsI TGGCCA 2 cut(s) 168, 1215
MluNI TGGCCA 2 cut(s) 168, 1215
MlyI GAGTC 4 cut(s) 1961, 2490, 2501, 2837
MmeI TCCRAC 4 cut(s) 310, 915, 1910, 2515
Mox20I TGGCCA 2 cut(s) 168, 1215
Mph1103I ATGCAT 1 cut(s) 1834
MroXI GAANNNNTTC 3 cut(s) 496, 656, 677
MscI TGGCCA 2 cut(s) 168, 1215
MseI TTAA 5 cut(s) 521, 636, 2324, 2703, 2892
MslI CAYNNNNRTG 2 cut(s) 2167, 2475
Msp20I TGGCCA 2 cut(s) 168, 1215
MspCI CTTAAG 2 cut(s) 520, 2891
MspI CCGG 4 cut(s) 396, 612, 1823, 2191
MspR9I CCNGG 4 cut(s) 165, 923, 1823, 1990
MunI CAATTG 2 cut(s) 591, 663
Mva1269I GAATGC 4 cut(s) 61, 1290, 2174, 2863
MvaI CCWGG 3 cut(s) 165, 923, 1990
MwoI GCNNNNNNNGC 3 cut(s) 252, 396, 2771
NciI CCSGG 1 cut(s) 1823
NcoI CCATGG 1 cut(s) 2940
NheI GCTAGC 1 cut(s) 88
NlaIV GGNNCC 9 cut(s) 184, 598, 1144, 1432, 1581, 1725, 2548, 2624, 2742
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 4 cut(s) 813, 1037, 2423, 2788
NsiI ATGCAT 1 cut(s) 1834
NspI RCATGY 5 cut(s) 1135, 1821, 2044, 2223, 2910
NspV TTCGAA 2 cut(s) 235, 1744
PaeI GCATGC 2 cut(s) 2044, 2910
PagI TCATGA 1 cut(s) 2392
PceI AGGCCT 1 cut(s) 708
PciI ACATGT 2 cut(s) 1131, 2219
PcsI WCGNNNNNNNCGW 1 cut(s) 1180
PctI GAATGC 4 cut(s) 61, 1290, 2174, 2863
PdmI GAANNNNTTC 3 cut(s) 496, 656, 677
PfeI GAWTC 6 cut(s) 1071, 1093, 2028, 2083, 2328, 2686
PflMI CCANNNNNTGG 3 cut(s) 164, 416, 1304
PfoI TCCNGGA 1 cut(s) 1988
PkrI GCNGC 6 cut(s) 294, 953, 1182, 1441, 2307, 2563
PleI GAGTC 4 cut(s) 1961, 2490, 2501, 2837
PpsI GAGTC 4 cut(s) 1961, 2490, 2501, 2837
Ppu21I YACGTR 1 cut(s) 1264
PpuMI RGGWCCY 3 cut(s) 1660, 2122, 2959
PscI ACATGT 2 cut(s) 1131, 2219
Psp1406I AACGTT 2 cut(s) 546, 2355
Psp5II RGGWCCY 3 cut(s) 1660, 2122, 2959
Psp6I CCWGG 3 cut(s) 163, 921, 1988
PspGI CCWGG 3 cut(s) 163, 921, 1988
PspN4I GGNNCC 9 cut(s) 184, 598, 1144, 1432, 1581, 1725, 2548, 2624, 2742
PspPI GGNCC 6 cut(s) 155, 596, 1660, 2122, 2655, 2959
PspPPI RGGWCCY 3 cut(s) 1660, 2122, 2959
PstI CTGCAG 1 cut(s) 1182
PsuI RGATCY 6 cut(s) 67, 1621, 2211, 2622, 2740, 2997
RsaI GTAC 5 cut(s) 310, 616, 1535, 1581, 2952
RsaNI GTAC 5 cut(s) 309, 615, 1534, 1580, 2951
RseI CAYNNNNRTG 2 cut(s) 2167, 2475
SaqAI TTAA 5 cut(s) 521, 636, 2324, 2703, 2892
SatI GCNGC 6 cut(s) 293, 952, 1181, 1440, 2306, 2562
Sau96I GGNCC 6 cut(s) 155, 596, 1660, 2122, 2655, 2959
SchI GAGTC 4 cut(s) 1961, 2490, 2501, 2837
ScrFI CCNGG 4 cut(s) 165, 923, 1823, 1990
SfaNI GCATC 5 cut(s) 304, 483, 1841, 1883, 2600
SfcI CTRYAG 4 cut(s) 1178, 1664, 1962, 2769
SfuI TTCGAA 2 cut(s) 235, 1744
SinI GGWCC 5 cut(s) 155, 596, 1660, 2122, 2959
SmiMI CAYNNNNRTG 2 cut(s) 2167, 2475
SmlI CTYRAG 2 cut(s) 520, 2891
SmoI CTYRAG 2 cut(s) 520, 2891
SnaBI TACGTA 1 cut(s) 1264
SphI GCATGC 2 cut(s) 2044, 2910
SseBI AGGCCT 1 cut(s) 708
SsiI CCGC 5 cut(s) 292, 388, 407, 695, 1442
SspMI CTAG 6 cut(s) 89, 899, 1088, 1436, 2264, 2718
StuI AGGCCT 1 cut(s) 708
StyD4I CCNGG 4 cut(s) 163, 921, 1821, 1988
StyI CCWWGG 6 cut(s) 486, 898, 1048, 1113, 2924, 2940
TaaI ACNGT 4 cut(s) 1529, 2312, 2533, 2876
TaiI ACGT 7 cut(s) 549, 657, 1266, 1518, 2109, 2358, 2370
TaqI TCGA 4 cut(s) 235, 1744, 2451, 2661
TaqII GACCGA 1 cut(s) 869
TatI WGTACW 1 cut(s) 2950
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 6 cut(s) 1071, 1093, 2028, 2083, 2328, 2686
Tru1I TTAA 5 cut(s) 521, 636, 2324, 2703, 2892
Tru9I TTAA 5 cut(s) 521, 636, 2324, 2703, 2892
TscAI CASTG 6 cut(s) 675, 1479, 2029, 2184, 2317, 2845
TseFI GTSAC 4 cut(s) 813, 1037, 2423, 2788
TseI GCWGC 5 cut(s) 951, 1180, 1439, 2305, 2561
Tsp45I GTSAC 4 cut(s) 813, 1037, 2423, 2788
TspGWI ACGGA 3 cut(s) 124, 2152, 2990
TspRI CASTG 6 cut(s) 675, 1479, 2029, 2184, 2317, 2845
Van91I CCANNNNNTGG 3 cut(s) 164, 416, 1304
Vha464I CTTAAG 2 cut(s) 520, 2891
VpaK11BI GGWCC 5 cut(s) 155, 596, 1660, 2122, 2959
XagI CCTNNNNNAGG 2 cut(s) 217, 702
XbaI TCTAGA 1 cut(s) 1087
XceI RCATGY 5 cut(s) 1135, 1821, 2044, 2223, 2910
XmaJI CCTAGG 1 cut(s) 898
XmiI GTMKAC 2 cut(s) 39, 2073
XmnI GAANNNNTTC 3 cut(s) 496, 656, 677
XspI CTAG 6 cut(s) 89, 899, 1088, 1436, 2264, 2718
Zsp2I ATGCAT 1 cut(s) 1834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.