Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327887.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

482 .. 874

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgttcacaggaagaagacccacagacgaaatgttcaaagacggtttgaaactccacgactttgttaagatggcattaccaggaaggcttgtgcagattatggacgctgctcttctcgccaccctagaagagacagctcctgcagcaactgcaggaaatgaagtgaactacatgcttacaggtcatttcaatgaaattgaagcagaagaggaaaatagagattatgagaacctaagcagggtggacacacgtgtgtggaagtgtatacattcaatatttgagataggactggcgtgctccgaggaatcacgagagaatagaatatgtatggaggatgtcctcagggacctccaccgtatacaaattgcttacaatggtgttgtgatcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.87

Weight (kDa)

4.86

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	265, 358
AcvI	CACGTG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	2 cut(s)	248, 250
AgsI	TTSAA	5 cut(s)	37, 49, 190, 200, 273
AjnI	CCWGG	1 cut(s)	79
AleI	CACNNNNGTG	2 cut(s)	251, 253
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	125
AlwNI	CAGNNNCTG	2 cut(s)	140, 149
ApeKI	GCWGC	2 cut(s)	107, 143
AspS9I	GGNCC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	341
BauI	CACGAG	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	94, 155
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	141, 150
BisI	GCNGC	2 cut(s)	108, 144
BlsI	GCNGC	2 cut(s)	109, 145
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	94, 155
BsgI	GTGCAG	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	347
BspMAI	CTGCAG	2 cut(s)	145, 154
BspQI	GCTCTTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	384
BssNAI	GTATAC	2 cut(s)	266, 359
BssSI	CACGAG	1 cut(s)	309
Bst1107I	GTATAC	2 cut(s)	266, 359
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	44, 356
Bst6I	CTCTTC	3 cut(s)	117, 123, 201
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	233, 341
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 143, 149
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	141, 150
BstV1I	GCAGC	2 cut(s)	94, 155
BstV2I	GAAGAC	1 cut(s)	22
BstZ17I	GTATAC	2 cut(s)	266, 359
Bsu36I	CCTNAGG	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	2 cut(s)	140, 149
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	2 cut(s)	88, 137
CviKI_1	RGCY	2 cut(s)	88, 137
DdeI	CTNAG	2 cut(s)	233, 341
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	117, 123, 201
EarI	CTCTTC	3 cut(s)	117, 123, 201
Eco47I	GGWCC	1 cut(s)	346
Eco72I	CACGTG	1 cut(s)	251
Eco81I	CCTNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	175
FaiI	YATR	7 cut(s)	101, 173, 225, 266, 325, 329, 359
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	384
FblI	GTMKAC	2 cut(s)	265, 358
Fnu4HI	GCNGC	2 cut(s)	108, 144
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	108, 144
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	108, 144
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	305
Hpy166II	GTNNAC	5 cut(s)	6, 166, 244, 266, 359
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	5 cut(s)	6, 166, 244, 266, 359
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	44, 356
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	94, 143, 152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 143, 149
HpyF3I	CTNAG	2 cut(s)	233, 341
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	384
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	142, 302
LpnPI	CCDG	8 cut(s)	66, 93, 138, 153, 165, 223, 275, 328
Lsp1109I	GCAGC	2 cut(s)	94, 155
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	250
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	24, 27, 104, 140, 218
MfeI	CAATTG	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	195, 363, 388
MnlI	CCTC	5 cut(s)	202, 295, 325, 350, 359
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	3 cut(s)	189, 251, 253
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	116, 143, 149
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	175
OliI	CACNNNNGTG	2 cut(s)	251, 253
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	109, 145
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	79
PspCI	CACGTG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	2 cut(s)	145, 154
PstNI	CAGNNNCTG	2 cut(s)	140, 149
RseI	CAYNNNNRTG	3 cut(s)	189, 251, 253
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	108, 144
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	5 cut(s)	139, 184, 234, 253, 351
SfcI	CTRYAG	2 cut(s)	141, 150
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	3 cut(s)	189, 251, 253
Sse9I	AATT	3 cut(s)	195, 363, 388
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	44, 356
TaiI	ACGT	1 cut(s)	253
TasI	AATT	3 cut(s)	195, 363, 388
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	107, 143
TspDTI	ATGAA	2 cut(s)	174, 207
VpaK11BI	GGWCC	1 cut(s)	346
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	2 cut(s)	265, 358
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.