RLG00000027092
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
8366152 .. 8369832
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027092

Sequence Viewer

Length: 3090 bp
ATGGAGCTTCATATGCTCAACTTCTGTGCATTTCGGTCTACCTACCTTCATGTCATGACTACCATTTTCCTTCTCACCAACCTTTTCCAACCTACTATCTTTGCAAATGCATTGAGCAATGAAACTGATCGATTCGCTTTGCTGAAATTCAAAGAATCCATTGCCACCGATCCAGATGGGTTGTTGAACTCATGGAATGACTCCGTTCACTTTTGCAAATGGCAAGGAATTAGTTGTGGCAGACGACATCAAAGAGTCATCAACCTCGAAAACAACAGCTTCTCTGGCAAGATTCCGCAACAAGTTGAACATTTATTCCGACTGCGAGATCTCAATCTCTATTTCAACATGTTAAAGGGGGGCATTCCAGTCAATCTCACCTTGTATGCAGAACTGAGCATTATAAGTATTGGATGGAACAGCCTTACCGGCAAAATTCCTTCAGAGATTGGGTCATTGAGGAAGCTTGCGAAACTCTATCTAAATAGCAACAATCTAACGGGACCCATCCCATCTTCCTTGGGGAATCTTTCATCATTCACTGCACTTTCCTTAGGAATGAACAATCTGGTGGGAACAATTCCAGAGGAGATAAGCCGATTGAGAAGCTTATCATATTTTGCAATTGGTCCCAATAATCTCTTTGGTTTGATCCCTTCCTCCCTATTTAACATATCATCTATGAACGTCGTCTCACTTCCGGAAAATAAGTTGAAGGGCAGTATTCCGCCTGGTATAGGCCTAAACATGCCTAATCTCCGAAGAATGTACCTCGGAGGAAATGAACTCTCTGGACAAATCCCAGCTTCACTTTCCAATGCTTCTAAGCTTCAGGAGCTTGATTTTGGGGGAAATAATTTTGTTGGCCAAGTTCCCGTAAGTTTTGGAAATTTTCCCAATCTCCAGTTGCTCAGCTGCGAGTCAAATAATCTAGGAAGTAATTCATCAAATGATTTGGGATTTATAACGTTCTTGACAAATTGCAGCAAACTGGAGGTGATTTCTTTGAGTTCGAACAATTTCGGAGGTGTTTTACCCAACTCTGTAGCCAATTTCTCAACACAACTGACTCGACTCTACCTTGGGGGCAATCAAATAGCGGGAACGATTCCTGAAACATTAGGAAATCTGAACAATTTAATACTCCTGACCCTGGAAGAAAACTTGTTCACAGGTACCATTCCAGCTTCTTTTGGGAAGTTACAAAAATTGCAAGTATTAAGTTTAGATTCCAATAGATTACCAGGCCGGATCCCATCTTCCTTAGGAAACCTCACCCAATTGTATCACCTCCACTTATTAGAAAATGAATTAGAAGGAAGCATTCCTCCAAATATTGGTAACTGCAAAAGTTTGCAGGTGATGGATATATCACACAATAAGCTTAGTGGAGATATACCATCACAGGTCATTGGTCTGTCCTTCTCCTTTGTCTTGCTCAACTTATCGCAAAACTCGCTAACTGGCATTCTGCCTGTGGAAGTGGGTAAGCTGAAGAATATTAATAGACTAGATATCTCTGATAATAATTTGACTGGAGGAATTCCAGAAATTATCAGAGGTTGTCAGAGCCTTGAATTTCTTGACTTACAAGGGAACCACTTTCAAGGAATCATACCTTCTTCTTTGGTTACTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTGTCAGGACTTATTCCACAAGACCTAAAGAGGCTTCCATTCATGCTTCATTTGAACCTTTCGTTCAACAATCTGGAGGGTGAGGTACCGAAAGGAGTTTTTCGAAACACAAGTGCCATATCATTGAATGGAAATACCAAACTTTGTGGTGGTGTTTCGGAATTGCAGCTACCAGCATGCCTCATCAAAGTACCAAAGCAAAGAAAGTTGCACGATTTCAATTTAAAGTTTACAATTTCCTTGGTTGCTGGATGCTCTTTTCTCTTTGCAGTTGTCTTAGCTCTTTATTGGAGGAGAAAAACTCAAAAGAGGAAACCATTAACTGCAGTGTCATCAATCAAATTCCTTCCAAAGGTTTCATACCACACACTTCATCGAGCTACTGACGGATTCTCTCTAAGCAATCAAATTGGATCAGGCGGTTTTGGCTCTATATACAAAGGGATTCTTAATCGAGAAGAAAACAATGTTGTTGCCATAAAGTTCCTCAACCTTCAACAGAAAGGAGCTTCCAAGAGTTTTCTGGCAGAATGCAATGCAATGAGAAATATCCGGCACAAGAACCTTTTGAAGATCTTAACATGTTGTTCCAGTACATATTACAATGGTAATGACTTCAAAGCTCTAGTTTTTGAGTATATGTCAAATGGAAGTTTAGAGGAGTGGTTGCACAGAGAAAACCAATCAAGGAGTTTGAACCTTCATCAAAGACTGAATATTGCTATTGATGTGGCTTCTGCGTTGTGTTATCTTCATGACCATTGTGAACCACAAATCATTCACTATGACTTGAAGCCGAGCAACGTTCTTCTTAATGATGACATGGTAGCTCGTGTTGGTGATTTTGGGTTAGCAAGACTCATCTCAACGACCACAGACTCCTCTCAAAATCAAAGTAGCACAGCTGGGGTAAAAGGAACAATTGGCTATGTTGCTCCAGAGTATGCAAGTGGTGTTAAGCCATCAAGACAAGGGGATGTATATAGTTATGGGATGCTCGTGTTGCAAATGTTCACAGGAAAAAGACCTATTGACGAAATGTTTAAAGAGGGTTTGAACCTCCATAACTTTGTCAAGTTGGCTATACCAGGAAGACTAATGCAGATTGTGGATCCTACTCTTCTTGCCACATTAAAAGAGGCAGCACCTGCAACAGCACAAAATGAAGTGAACTACATCAGTGGTTACAATAATGAAATCGAAGCAGATGAAGAAAACATTGACAATGAGAATTTAAGCAAGATGACCACTTATGTGTGGAAGTGGATACTTCCAATCCTTAAGATTGGACTTGCATGCTCGGAAGAATCTCCGAGGAATAGGATGTCTATGGAGGAGGTCCACAAAGCGCTACACCATATAAAAGCTGCTTACACTGGTGTTGACATCTGTCGAGAAAGGCCAAGAAGAAGCTAA

Protein Analysis

1030

Amino Acids

113.71

Weight (kDa)

8.8

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 79 4e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 84 - 307 3.5e-09 Leucine-rich repeat region
LRR_8 PF13855 355 - 414 7.8e-09 Leucine rich repeat
LRR_14 PF23598 355 - 434 6.4e-07 Leucine-rich repeat region
LRR_14 PF23598 421 - 506 3.8e-06 Leucine-rich repeat region
LRR_14 PF23598 444 - 584 5.9e-07 Leucine-rich repeat region
LRR_8 PF13855 480 - 535 2.4e-07 Leucine rich repeat
LRR_8 PF13855 524 - 583 7.7e-09 Leucine rich repeat
Pkinase PF00069 690 - 909 6.7e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 691 - 907 4.9e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 404, 965
AarI CACCTGC 2 cut(s) 1348, 2830
Acc36I ACCTGC 2 cut(s) 1348, 2830
Acc65I GGTACC 2 cut(s) 1175, 1759
AccB1I GGYRCC 2 cut(s) 1175, 1759
AccB7I CCANNNNNTGG 1 cut(s) 1337
AccI GTMKAC 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 700
AciI CCGC 4 cut(s) 296, 728, 1100, 2094
AclI AACGTT 2 cut(s) 968, 2478
AclWI GGATC 7 cut(s) 164, 646, 1246, 1259, 2095, 2780, 2793
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 7 cut(s) 146, 435, 889, 1542, 1577, 2015, 2905
AcuI CTGAAG 4 cut(s) 426, 815, 1514, 1631
AfaI GTAC 5 cut(s) 770, 1177, 1761, 1866, 2269
AfeI AGCGCT 1 cut(s) 3024
AfiI CCNNNNNNNGG 4 cut(s) 737, 1153, 1337, 2026
AflII CTTAAG 1 cut(s) 2954
AflIII ACRYGT 2 cut(s) 348, 2255
AjnI CCWGG 4 cut(s) 730, 1152, 1243, 2761
AleI CACNNNNGTG 1 cut(s) 2927
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
Alw26I GTCTC 1 cut(s) 697
AlwI GGATC 7 cut(s) 164, 646, 1246, 1259, 2095, 2780, 2793
AlwNI CAGNNNCTG 1 cut(s) 2822
Aor13HI TCCGGA 1 cut(s) 700
Aor51HI AGCGCT 1 cut(s) 3024
AoxI GGCC 4 cut(s) 739, 865, 1246, 3074
ApeKI GCWGC 5 cut(s) 915, 984, 1840, 2816, 3041
ApoI RAATTY 7 cut(s) 146, 435, 889, 1542, 1577, 2015, 2905
AseI ATTAAT 1 cut(s) 1503
Asp700I GAANNNNTTC 2 cut(s) 940, 1019
Asp718I GGTACC 2 cut(s) 1175, 1759
AspLEI GCGC 1 cut(s) 3025
AspS9I GGNCC 3 cut(s) 503, 629, 3013
AsuHPI GGTGA 8 cut(s) 67, 370, 1009, 1267, 1280, 1372, 1766, 2525
AsuII TTCGAA 2 cut(s) 1013, 1777
AvaII GGWCC 3 cut(s) 503, 629, 3013
AxyI CCTNAGG 2 cut(s) 553, 1264
BalI TGGCCA 1 cut(s) 867
BamHI GGATCC 2 cut(s) 1251, 2785
BanI GGYRCC 2 cut(s) 1175, 1759
BauI CACGAG 2 cut(s) 2505, 2672
BbsI GAAGAC 2 cut(s) 1637, 2773
BbvI GCAGC 5 cut(s) 902, 996, 1852, 2828, 3028
BccI CCATC 8 cut(s) 170, 408, 515, 520, 1264, 1357, 1408, 2644
BciT130I CCWGG 4 cut(s) 732, 1154, 1245, 2763
BciVI GTATCC 1 cut(s) 2934
BcoDI GTCTC 1 cut(s) 697
BfaI CTAG 4 cut(s) 932, 1511, 1655, 2300
BfmI CTRYAG 2 cut(s) 1044, 1998
BfoI RGCGCY 1 cut(s) 3026
BfrI CTTAAG 1 cut(s) 2954
BfuAI ACCTGC 2 cut(s) 1348, 2830
BfuI GTATCC 1 cut(s) 2934
BglI GCCNNNNNGGC 1 cut(s) 429
BglII AGATCT 3 cut(s) 328, 1657, 2247
BisI GCNGC 5 cut(s) 916, 985, 1841, 2817, 3042
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 5 cut(s) 917, 986, 1842, 2818, 3043
Bme1390I CCNGG 4 cut(s) 732, 1154, 1245, 2763
Bme18I GGWCC 3 cut(s) 503, 629, 3013
BmgT120I GGNCC 3 cut(s) 503, 629, 3013
BmiI GGNNCC 8 cut(s) 504, 505, 631, 1177, 1253, 1598, 1761, 2787
BmrFI CCNGG 4 cut(s) 732, 1154, 1245, 2763
BmsI GCATC 2 cut(s) 1916, 2658
BoxI GACNNNNGTC 1 cut(s) 3063
BpiI GAAGAC 2 cut(s) 1637, 2773
BplI GAGNNNNNCTC 2 cut(s) 1960, 1992
BpmI CTGGAG 5 cut(s) 887, 1013, 1557, 1769, 2595
Bpu1102I GCTNAGC 1 cut(s) 911
Bpu14I TTCGAA 2 cut(s) 1013, 1777
Bsa29I ATCGAT 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 6 cut(s) 519, 772, 1081, 1152, 1914, 2987
BsaWI WCCGGW 1 cut(s) 700
Bsc4I CCNNNNNNNGG 4 cut(s) 737, 1153, 1337, 2026
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 7 cut(s) 368, 904, 996, 1468, 1540, 2265, 3055
Bse21I CCTNAGG 2 cut(s) 553, 1264
Bse3DI GCAATG 4 cut(s) 124, 159, 2215, 2220
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 700
BseBI CCWGG 4 cut(s) 732, 1154, 1245, 2763
BseCI ATCGAT 1 cut(s) 130
BseDI CCNNGG 6 cut(s) 519, 772, 1081, 1152, 1914, 2987
BseGI GGATG 6 cut(s) 419, 507, 1931, 2656, 2673, 3003
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 4 cut(s) 737, 1153, 1337, 2026
BseMI GCAATG 4 cut(s) 124, 159, 2215, 2220
BseMII CTCAG 2 cut(s) 386, 925
BseNI ACTGG 7 cut(s) 368, 904, 996, 1468, 1540, 2265, 3055
BseRI GAGGAG 5 cut(s) 602, 1981, 2348, 2545, 3023
BseXI GCAGC 5 cut(s) 902, 996, 1852, 2828, 3028
BseYI CCCAGC 2 cut(s) 802, 2579
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 4 cut(s) 741, 867, 1248, 3076
BshNI GGYRCC 2 cut(s) 1175, 1759
BshVI ATCGAT 1 cut(s) 130
BsiSI CCGG 4 cut(s) 429, 701, 1249, 2227
BslFI GGGAC 2 cut(s) 516, 615
BslI CCNNNNNNNGG 4 cut(s) 737, 1153, 1337, 2026
BsmAI GTCTC 1 cut(s) 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 2 cut(s) 516, 615
BsmI GAATGC 4 cut(s) 363, 1323, 1467, 2210
BsnI GGCC 4 cut(s) 741, 867, 1248, 3076
Bsp119I TTCGAA 2 cut(s) 1013, 1777
Bsp13I TCCGGA 1 cut(s) 700
Bsp143I GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
Bsp1720I GCTNAGC 1 cut(s) 911
BspACI CCGC 4 cut(s) 296, 728, 1100, 2094
BspANI GGCC 4 cut(s) 741, 867, 1248, 3076
BspCNI CTCAG 2 cut(s) 387, 924
BspDI ATCGAT 1 cut(s) 130
BspEI TCCGGA 1 cut(s) 700
BspHI TCATGA 2 cut(s) 54, 2428
BspLI GGNNCC 8 cut(s) 504, 505, 631, 1177, 1253, 1598, 1761, 2787
BspMAI CTGCAG 1 cut(s) 2002
BspMI ACCTGC 2 cut(s) 1348, 2830
BspPI GGATC 7 cut(s) 164, 646, 1246, 1259, 2095, 2780, 2793
BspT104I TTCGAA 2 cut(s) 1013, 1777
BspT107I GGYRCC 2 cut(s) 1175, 1759
BspTI CTTAAG 1 cut(s) 2954
BsrDI GCAATG 4 cut(s) 124, 159, 2215, 2220
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 7 cut(s) 368, 904, 996, 1468, 1540, 2265, 3055
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 6 cut(s) 519, 772, 1081, 1152, 1914, 2987
BssMI GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
BssSI CACGAG 2 cut(s) 2505, 2672
BssT1I CCWWGG 3 cut(s) 519, 1081, 1914
Bst2BI CACGAG 2 cut(s) 2505, 2672
Bst2UI CCWGG 4 cut(s) 732, 1154, 1245, 2763
Bst6I CTCTTC 1 cut(s) 2799
BstAFI CTTAAG 1 cut(s) 2954
BstAPI GCANNNNNTGC 1 cut(s) 2822
BstBI TTCGAA 2 cut(s) 1013, 1777
BstC8I GCNNGC 3 cut(s) 468, 1852, 2971
BstDEI CTNAG 8 cut(s) 395, 553, 825, 911, 1264, 1385, 1951, 2072
BstENI CCTNNNNNAGG 2 cut(s) 735, 2024
BstF5I GGATG 6 cut(s) 419, 507, 1931, 2656, 2673, 3003
BstH2I RGCGCY 1 cut(s) 3026
BstHHI GCGC 1 cut(s) 3025
BstKTI GATC 9 cut(s) 130, 172, 331, 654, 1254, 1660, 2090, 2250, 2788
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
BstMWI GCNNNNNNNGC 8 cut(s) 13, 285, 429, 835, 1456, 2100, 2677, 2822
BstNI CCWGG 4 cut(s) 732, 1154, 1245, 2763
BstNSI RCATGY 5 cut(s) 352, 751, 1854, 2259, 2973
BstPAI GACNNNNGTC 1 cut(s) 3063
BstSCI CCNGG 4 cut(s) 730, 1152, 1243, 2761
BstSFI CTRYAG 2 cut(s) 1044, 1998
BstV1I GCAGC 5 cut(s) 902, 996, 1852, 2828, 3028
BstV2I GAAGAC 2 cut(s) 1637, 2773
BstX2I RGATCY 5 cut(s) 328, 1251, 1657, 2247, 2785
BstYI RGATCY 5 cut(s) 328, 1251, 1657, 2247, 2785
Bsu15I ATCGAT 1 cut(s) 130
Bsu36I CCTNAGG 2 cut(s) 553, 1264
BsuI GTATCC 1 cut(s) 2934
BsuRI GGCC 4 cut(s) 741, 867, 1248, 3076
BsuTUI ATCGAT 1 cut(s) 130
BtsCI GGATG 6 cut(s) 419, 507, 1931, 2656, 2673, 3003
BtsI GCAGTG 2 cut(s) 540, 2007
BtsIMutI CAGTG 4 cut(s) 540, 2007, 2860, 3048
BveI ACCTGC 2 cut(s) 1348, 2830
Cac8I GCNNGC 3 cut(s) 468, 1852, 2971
CaiI CAGNNNCTG 1 cut(s) 2822
CciI TCATGA 2 cut(s) 54, 2428
CfoI GCGC 1 cut(s) 3025
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 3 cut(s) 503, 629, 3013
ClaI ATCGAT 1 cut(s) 130
Csp6I GTAC 5 cut(s) 769, 1176, 1760, 1865, 2268
CspCI CAANNNNNGTGG 2 cut(s) 1801, 1836
CviQI GTAC 5 cut(s) 769, 1176, 1760, 1865, 2268
DdeI CTNAG 8 cut(s) 395, 553, 825, 911, 1264, 1385, 1951, 2072
DpnI GATC 9 cut(s) 129, 171, 330, 653, 1253, 1659, 2089, 2249, 2787
DpnII GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
DraI TTTAAA 2 cut(s) 1899, 2719
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 1 cut(s) 2799
EarI CTCTTC 1 cut(s) 2799
EciI GGCGGA 1 cut(s) 717
Eco130I CCWWGG 3 cut(s) 519, 1081, 1914
Eco147I AGGCCT 1 cut(s) 741
Eco32I GATATC 1 cut(s) 1516
Eco47I GGWCC 3 cut(s) 503, 629, 3013
Eco47III AGCGCT 1 cut(s) 3024
Eco57I CTGAAG 4 cut(s) 426, 815, 1514, 1631
Eco81I CCTNAGG 2 cut(s) 553, 1264
EcoNI CCTNNNNNAGG 2 cut(s) 735, 2024
EcoO109I RGGNCCY 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 1542
EcoRII CCWGG 4 cut(s) 730, 1152, 1243, 2761
EcoRV GATATC 1 cut(s) 1516
EcoT14I CCWWGG 3 cut(s) 519, 1081, 1914
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 3 cut(s) 519, 1081, 1914
Esp3I CGTCTC 1 cut(s) 697
FalI AAGNNNNNCTT 2 cut(s) 2106, 2138
FaqI GGGAC 2 cut(s) 516, 615
FauI CCCGC 1 cut(s) 1093
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 5 cut(s) 916, 985, 1841, 2817, 3042
FokI GGATG 6 cut(s) 426, 494, 1938, 2663, 2680, 3010
Fsp4HI GCNGC 5 cut(s) 916, 985, 1841, 2817, 3042
FspBI CTAG 4 cut(s) 932, 1511, 1655, 2300
GlaI GCGC 1 cut(s) 3024
GluI GCNGC 5 cut(s) 916, 985, 1841, 2817, 3042
GsaI CCCAGC 2 cut(s) 806, 2583
GsuI CTGGAG 5 cut(s) 887, 1013, 1557, 1769, 2595
HaeII RGCGCY 1 cut(s) 3026
HaeIII GGCC 4 cut(s) 741, 867, 1248, 3076
HapII CCGG 4 cut(s) 429, 701, 1249, 2227
HhaI GCGC 1 cut(s) 3025
Hin6I GCGC 1 cut(s) 3023
HinP1I GCGC 1 cut(s) 3023
HincII GTYRAC 1 cut(s) 3058
HindII GTYRAC 1 cut(s) 3058
HindIII AAGCTT 4 cut(s) 464, 607, 827, 1382
HpaII CCGG 4 cut(s) 429, 701, 1249, 2227
HphI GGTGA 8 cut(s) 67, 370, 1009, 1267, 1280, 1372, 1766, 2525
Hpy166II GTNNAC 9 cut(s) 39, 208, 1170, 1905, 2441, 2688, 2845, 3016, 3058
Hpy8I GTNNAC 9 cut(s) 39, 208, 1170, 1905, 2441, 2688, 2845, 3016, 3058
Hpy99I CGWCG 1 cut(s) 692
HpyCH4IV ACGT 3 cut(s) 687, 968, 2478
HpyF10VI GCNNNNNNNGC 8 cut(s) 13, 285, 429, 835, 1456, 2100, 2677, 2822
HpyF3I CTNAG 8 cut(s) 395, 553, 825, 911, 1264, 1385, 1951, 2072
HpySE526I ACGT 3 cut(s) 687, 968, 2478
HspAI GCGC 1 cut(s) 3023
KflI GGGWCCC 1 cut(s) 503
Kpn2I TCCGGA 1 cut(s) 700
KpnI GGTACC 2 cut(s) 1179, 1763
Kzo9I GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
LmnI GCTCC 4 cut(s) 4, 835, 2180, 2614
Lsp1109I GCAGC 5 cut(s) 902, 996, 1852, 2828, 3028
LweI GCATC 2 cut(s) 1916, 2658
MaeI CTAG 4 cut(s) 932, 1511, 1655, 2300
MaeII ACGT 3 cut(s) 687, 968, 2478
MaeIII GTNAC 4 cut(s) 1200, 1340, 1630, 2858
MalI GATC 9 cut(s) 129, 171, 330, 653, 1253, 1659, 2089, 2249, 2787
MboI GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
MfeI CAATTG 3 cut(s) 624, 1280, 2595
MflI RGATCY 5 cut(s) 328, 1251, 1657, 2247, 2785
MlsI TGGCCA 1 cut(s) 867
MluNI TGGCCA 1 cut(s) 867
MlyI GAGTC 7 cut(s) 194, 264, 929, 1063, 1068, 2526, 2546
MmeI TCCRAC 2 cut(s) 112, 343
Mox20I TGGCCA 1 cut(s) 867
Mph1103I ATGCAT 1 cut(s) 112
MroI TCCGGA 1 cut(s) 700
MroXI GAANNNNTTC 2 cut(s) 940, 1019
MscI TGGCCA 1 cut(s) 867
MslI CAYNNNNRTG 1 cut(s) 2927
Msp20I TGGCCA 1 cut(s) 867
MspA1I CMGCKG 2 cut(s) 915, 2579
MspCI CTTAAG 1 cut(s) 2954
MspI CCGG 4 cut(s) 429, 701, 1249, 2227
MspR9I CCNGG 4 cut(s) 732, 1154, 1245, 2763
MunI CAATTG 3 cut(s) 624, 1280, 2595
Mva1269I GAATGC 4 cut(s) 363, 1323, 1467, 2210
MvaI CCWGG 4 cut(s) 732, 1154, 1245, 2763
MwoI GCNNNNNNNGC 8 cut(s) 13, 285, 429, 835, 1456, 2100, 2677, 2822
NdeI CATATG 1 cut(s) 12
NdeII GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
NlaIV GGNNCC 8 cut(s) 504, 505, 631, 1177, 1253, 1598, 1761, 2787
NmeAIII GCCGAG 1 cut(s) 2496
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 5 cut(s) 352, 751, 1854, 2259, 2973
NspV TTCGAA 2 cut(s) 1013, 1777
OliI CACNNNNGTG 1 cut(s) 2927
PaeI GCATGC 2 cut(s) 1854, 2973
PagI TCATGA 2 cut(s) 54, 2428
PaqCI CACCTGC 2 cut(s) 1348, 2830
PceI AGGCCT 1 cut(s) 741
PciI ACATGT 2 cut(s) 348, 2255
PctI GAATGC 4 cut(s) 363, 1323, 1467, 2210
PdmI GAANNNNTTC 2 cut(s) 940, 1019
PflMI CCANNNNNTGG 1 cut(s) 1337
PkrI GCNGC 5 cut(s) 917, 986, 1842, 2818, 3043
PleI GAGTC 7 cut(s) 194, 263, 928, 1063, 1068, 2526, 2546
PpsI GAGTC 7 cut(s) 194, 263, 928, 1063, 1068, 2526, 2546
PpuMI RGGWCCY 1 cut(s) 503
PscI ACATGT 2 cut(s) 348, 2255
PshAI GACNNNNGTC 1 cut(s) 3063
PshBI ATTAAT 1 cut(s) 1503
PsiI TTATAA 2 cut(s) 404, 965
Psp1406I AACGTT 2 cut(s) 968, 2478
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 4 cut(s) 730, 1152, 1243, 2761
PspFI CCCAGC 2 cut(s) 802, 2579
PspGI CCWGG 4 cut(s) 730, 1152, 1243, 2761
PspN4I GGNNCC 8 cut(s) 504, 505, 631, 1177, 1253, 1598, 1761, 2787
PspPI GGNCC 3 cut(s) 503, 629, 3013
PspPPI RGGWCCY 1 cut(s) 503
PstI CTGCAG 1 cut(s) 2002
PstNI CAGNNNCTG 1 cut(s) 2822
PsuI RGATCY 5 cut(s) 328, 1251, 1657, 2247, 2785
PvuII CAGCTG 2 cut(s) 915, 2579
RsaI GTAC 5 cut(s) 770, 1177, 1761, 1866, 2269
RsaNI GTAC 5 cut(s) 769, 1176, 1760, 1865, 2268
RseI CAYNNNNRTG 1 cut(s) 2927
SatI GCNGC 5 cut(s) 916, 985, 1841, 2817, 3042
Sau3AI GATC 9 cut(s) 127, 169, 328, 651, 1251, 1657, 2087, 2247, 2785
Sau96I GGNCC 3 cut(s) 503, 629, 3013
SchI GAGTC 7 cut(s) 194, 264, 929, 1063, 1068, 2526, 2546
ScrFI CCNGG 4 cut(s) 732, 1154, 1245, 2763
SfaNI GCATC 2 cut(s) 1916, 2658
SfcI CTRYAG 2 cut(s) 1044, 1998
SfuI TTCGAA 2 cut(s) 1013, 1777
SinI GGWCC 3 cut(s) 503, 629, 3013
SmiMI CAYNNNNRTG 1 cut(s) 2927
SmlI CTYRAG 1 cut(s) 2954
SmoI CTYRAG 1 cut(s) 2954
SphI GCATGC 2 cut(s) 1854, 2973
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 4 cut(s) 296, 728, 1100, 2094
SspI AATATT 3 cut(s) 1336, 1501, 2392
SspMI CTAG 4 cut(s) 932, 1511, 1655, 2300
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 4 cut(s) 730, 1152, 1243, 2761
StyI CCWWGG 3 cut(s) 519, 1081, 1914
TaiI ACGT 3 cut(s) 690, 971, 2481
TaqI TCGA 9 cut(s) 130, 267, 1013, 1072, 1777, 2050, 2128, 2874, 3067
TaqII GACCGA 1 cut(s) 24
TatI WGTACW 1 cut(s) 2267
TscAI CASTG 4 cut(s) 547, 2007, 2860, 3055
TseI GCWGC 5 cut(s) 915, 984, 1840, 2816, 3041
TspGWI ACGGA 2 cut(s) 193, 2076
TspRI CASTG 4 cut(s) 547, 2007, 2860, 3055
Van91I CCANNNNNTGG 1 cut(s) 1337
Vha464I CTTAAG 1 cut(s) 2954
VpaK11BI GGWCC 3 cut(s) 503, 629, 3013
VspI ATTAAT 1 cut(s) 1503
XagI CCTNNNNNAGG 2 cut(s) 735, 2024
XapI RAATTY 7 cut(s) 146, 435, 889, 1542, 1577, 2015, 2905
XbaI TCTAGA 1 cut(s) 1654
XceI RCATGY 5 cut(s) 352, 751, 1854, 2259, 2973
XcmI CCANNNNNNNNNTGG 1 cut(s) 2194
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 2 cut(s) 940, 1019
XspI CTAG 4 cut(s) 932, 1511, 1655, 2300
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.