Rorug01G0032200
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
5439857 .. 5440945
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0032200.1

Sequence Viewer

Length: 672 bp
ATGCCAACAGCTTTTGTCAACCACTTCAATGGACCAGCACTATGCAAACTTCGAGGCCCTACTGGAAAATGCTGGGACGTAAAATTGGAAGAGAAAAACAATGATCTATTCTTCCATAAAGGCTGGAAGAAATTTGTGAAGGATAACTATTTGGAGGAAGGAGACTTTCTGGTTTTCAATTATGATGGCAATTCATTGTTCAGTGTGACAATCTATGATGAAAGTGCATGTGAAATGGACATGGAAGAAGCCAAGAGAAAGAGAAGTACTGGCTGTTTTGTTGGTCAAATGAGGGATTATGTCATGCCTGGGGAGACAAGACTCAGAATCATTGAGTTCAAATCAGAGCATCTTTGCTTTAAGAGAACTATGGAGGCTCACAGACTGTATCAGCTGAACATTCCTATAATAATAGCCAGGGCTAAGGGTCTCATGAGCAAGCGGACTATAGAGCTTCGGGATCCAAGCAACAGATCATGGCCTGTTACAGTGACCCCCATGGAAGATGGTCGTACACTTATGAACAAAGGCTGGTGTGATTGTTGCAAGGCGAACCAGATTAAGAAAGGGAACACCGTTGTTTTTGAGTTTGTGAAGGGACATGTGAAGCTTCACATCATTAGAGATGAGGGATGTGAAGTGGTGCTCGCAGGTCCTAATATCGTATATTGA

Protein Analysis

223

Amino Acids

25.77

Weight (kDa)

8.67

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 73 8.7e-16 B3 DNA binding domain
B3 PF02362 126 - 206 4.7e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AciI CCGC 1 cut(s) 442
AclWI GGATC 2 cut(s) 455, 468
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 2 cut(s) 268, 514
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 3 cut(s) 28, 178, 340
AjnI CCWGG 2 cut(s) 307, 416
AluBI AGCT 4 cut(s) 11, 394, 454, 610
AluI AGCT 4 cut(s) 11, 394, 454, 610
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 3 cut(s) 156, 308, 434
AlwI GGATC 2 cut(s) 455, 468
AoxI GGCC 2 cut(s) 55, 479
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 32, 56, 653
AvaII GGWCC 2 cut(s) 32, 653
BamHI GGATCC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 648
BccI CCATC 2 cut(s) 179, 500
BciT130I CCWGG 2 cut(s) 309, 418
BcoDI GTCTC 3 cut(s) 156, 308, 434
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 641
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 309, 418
Bme18I GGWCC 2 cut(s) 32, 653
BmgT120I GGNCC 3 cut(s) 32, 56, 653
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 2 cut(s) 309, 418
BmsI GCATC 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 308, 417, 498
Bse1I ACTGG 2 cut(s) 67, 274
BseBI CCWGG 2 cut(s) 309, 418
BseDI CCNNGG 3 cut(s) 308, 417, 498
BseGI GGATG 1 cut(s) 638
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 2 cut(s) 67, 274
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 2 cut(s) 57, 481
BsiHKAI GWGCWC 1 cut(s) 648
BslFI GGGAC 2 cut(s) 89, 612
BsmAI GTCTC 3 cut(s) 156, 308, 434
BsmFI GGGAC 2 cut(s) 89, 612
BsnI GGCC 2 cut(s) 57, 481
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 3 cut(s) 103, 460, 473
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 1 cut(s) 442
BspANI GGCC 2 cut(s) 57, 481
BspCNI CTCAG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 2 cut(s) 455, 468
BspTNI GGTCTC 1 cut(s) 434
BsrI ACTGG 2 cut(s) 67, 274
BssECI CCNNGG 3 cut(s) 308, 417, 498
BssMI GATC 3 cut(s) 103, 460, 473
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 2 cut(s) 309, 418
Bst4CI ACNGT 3 cut(s) 387, 490, 577
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 440, 648
BstDEI CTNAG 2 cut(s) 323, 423
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 638
BstKTI GATC 3 cut(s) 106, 463, 476
BstMAI GTCTC 3 cut(s) 156, 308, 434
BstMBI GATC 3 cut(s) 103, 460, 473
BstNI CCWGG 2 cut(s) 309, 418
BstNSI RCATGY 2 cut(s) 231, 605
BstSCI CCNGG 2 cut(s) 307, 416
BstSFI CTRYAG 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 2 cut(s) 57, 481
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 208, 495
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 2 cut(s) 440, 648
CciI TCATGA 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 32, 56, 653
Csp6I GTAC 2 cut(s) 267, 513
CviAII CATG 7 cut(s) 228, 241, 304, 433, 477, 499, 602
CviQI GTAC 2 cut(s) 267, 513
DdeI CTNAG 2 cut(s) 323, 423
DpnI GATC 3 cut(s) 105, 462, 475
DpnII GATC 3 cut(s) 103, 460, 473
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 32, 653
EcoO109I RGGNCCY 2 cut(s) 56, 653
EcoRII CCWGG 2 cut(s) 307, 416
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 7 cut(s) 231, 244, 307, 436, 480, 502, 605
FaqI GGGAC 2 cut(s) 89, 612
FatI CATG 7 cut(s) 227, 240, 303, 432, 476, 498, 601
FokI GGATG 1 cut(s) 645
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 2 cut(s) 57, 481
Hin1II CATG 7 cut(s) 231, 244, 307, 436, 480, 502, 605
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 2 cut(s) 321, 327
Hpy166II GTNNAC 2 cut(s) 19, 515
Hpy188I TCNGA 2 cut(s) 326, 346
Hpy188III TCNNGA 2 cut(s) 433, 458
Hpy8I GTNNAC 2 cut(s) 19, 515
HpyAV CCTTC 3 cut(s) 133, 152, 589
HpyCH4III ACNGT 3 cut(s) 387, 490, 577
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 45, 227, 546
HpyF3I CTNAG 2 cut(s) 323, 423
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 7 cut(s) 231, 244, 307, 436, 480, 502, 605
Kzo9I GATC 3 cut(s) 103, 460, 473
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 3 cut(s) 205, 484, 490
MalI GATC 3 cut(s) 105, 462, 475
MboI GATC 3 cut(s) 103, 460, 473
MboII GAAGA 5 cut(s) 101, 103, 139, 257, 515
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 4 cut(s) 83, 131, 178, 190
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 5 cut(s) 47, 148, 285, 367, 622
MseI TTAA 2 cut(s) 360, 561
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 394
MspR9I CCNGG 2 cut(s) 309, 418
MvaI CCWGG 2 cut(s) 309, 418
NcoI CCATGG 1 cut(s) 498
NdeII GATC 3 cut(s) 103, 460, 473
NlaIII CATG 7 cut(s) 231, 244, 307, 436, 480, 502, 605
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 205, 490
NspI RCATGY 2 cut(s) 231, 605
PagI TCATGA 1 cut(s) 432
PciI ACATGT 1 cut(s) 601
PfeI GAWTC 1 cut(s) 327
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 653
PscI ACATGT 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 307, 416
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 2 cut(s) 307, 416
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 3 cut(s) 32, 56, 653
PspPPI RGGWCCY 1 cut(s) 653
PsuI RGATCY 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 2 cut(s) 268, 514
RsaNI GTAC 2 cut(s) 267, 513
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 2 cut(s) 360, 561
Sau3AI GATC 3 cut(s) 103, 460, 473
Sau96I GGNCC 3 cut(s) 32, 56, 653
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 309, 418
SduI GDGCHC 1 cut(s) 648
SetI ASST 6 cut(s) 13, 81, 396, 456, 612, 655
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 32, 653
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 4 cut(s) 83, 131, 178, 190
SsiI CCGC 1 cut(s) 442
StyD4I CCNGG 2 cut(s) 307, 416
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 3 cut(s) 387, 490, 577
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 52
TasI AATT 4 cut(s) 83, 131, 178, 190
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 360, 561
Tru9I TTAA 2 cut(s) 360, 561
TscAI CASTG 2 cut(s) 208, 495
TseFI GTSAC 2 cut(s) 205, 490
Tsp45I GTSAC 2 cut(s) 205, 490
TspDTI ATGAA 3 cut(s) 183, 234, 536
TspRI CASTG 2 cut(s) 208, 495
VpaK11BI GGWCC 2 cut(s) 32, 653
XapI RAATTY 1 cut(s) 131
XceI RCATGY 2 cut(s) 231, 605
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.