Rroxscaffold_4G00287030
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
7988265 .. 7989130
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287030.1

Sequence Viewer

Length: 798 bp
ATGCTTGATGCTAGGAAAAATAATTTTGTTGGCCAAATTCTCGCAAGTTTCGAAAATTTTTCTAATCTCCAACGGCTCAACTTCGGCTACAATAATCTAGGAAGTAACTCATCAAATGATTTGGGATTTATAACATTCTTGAAAAATTGCAACAATCTGGAAGTGGTTGATCTGAGTTTTAACAATTTTGGAGGTGTTTTACCCAACTCTGTGGCCAATTTCTCAACCCAAATGACTCAACTCTACCTTGGGAGCAATCAAATAGCGGGAGCGATTCCTGAAACATTAGGAAATCTCAACAATTTAATAGCCTTGGCCCCGGTAGAAAACTTGTTCACAAGTACCATTCCAGCTTCTTTTGGGAAGTTACAAAAGCTGCAAATATTAAATTTATTTTCCAATAGATTATCAGGCCAGATCCCATCTTCCTTAGGAAACCTCACCCAATTGTCTGAACTTGGTATGTTTGAAAATGAATTAGAAGGAAGCATTCCTCCAAATATTGGTCATTGGTCTGTCCTCCTTCTCTCCCTCAACTTATCGCAAAACTCGCTAAGAGGTACTCTGCCTGTGGGAATGGGTAAGCTGAAGAATATCAATACACTCAATATCTCTGATAATAATTTCACTGGAGGAATTCCAGACATTATTGAAGGTTGTCAGAGCCTTGAATTTCTTTTACTACAAGGGAATCTCTTTCAAGGAATCATACCTTCTTCTTTGGCTTCTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTGTCAGGACATATTCCAAAAGACCTATAG

Protein Analysis

265

Amino Acids

28.73

Weight (kDa)

5.14

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 46 - 157 3.4e-07 Leucine-rich repeat region
LRR_8 PF13855 198 - 257 5.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 503
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 412
AcoI YGGCCR 2 cut(s) 31, 213
AcsI RAATTY 5 cut(s) 36, 55, 388, 636, 671
AcuI CTGAAG 2 cut(s) 608, 725
AfaI GTAC 2 cut(s) 343, 562
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 5 cut(s) 142, 470, 653, 671, 701
AluBI AGCT 3 cut(s) 353, 376, 586
AluI AGCT 3 cut(s) 353, 376, 586
AlwI GGATC 1 cut(s) 412
AoxI GGCC 4 cut(s) 31, 213, 315, 412
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 5 cut(s) 36, 55, 388, 636, 671
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 433
AsuII TTCGAA 1 cut(s) 51
AxyI CCTNAGG 1 cut(s) 430
BalI TGGCCA 2 cut(s) 33, 215
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 320
BfaI CTAG 3 cut(s) 12, 98, 749
BfmI CTRYAG 1 cut(s) 794
BglII AGATCT 1 cut(s) 751
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 247, 312, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 634
Bse21I CCTNAGG 1 cut(s) 430
BseDI CCNNGG 3 cut(s) 247, 312, 318
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 634
BseXI GCAGC 1 cut(s) 363
BshFI GGCC 4 cut(s) 33, 215, 317, 414
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 503
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 4 cut(s) 33, 215, 317, 414
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 3 cut(s) 169, 417, 751
BspACI CCGC 1 cut(s) 266
BspANI GGCC 4 cut(s) 33, 215, 317, 414
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 412
BspT104I TTCGAA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 3 cut(s) 247, 312, 318
BssMI GATC 3 cut(s) 169, 417, 751
BssT1I CCWWGG 2 cut(s) 247, 312
BstBI TTCGAA 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 173, 430, 554
BstKTI GATC 3 cut(s) 172, 420, 754
BstMBI GATC 3 cut(s) 169, 417, 751
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 794
BstV1I GCAGC 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 2 cut(s) 417, 751
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 2 cut(s) 417, 751
Bsu36I CCTNAGG 1 cut(s) 430
BsuRI GGCC 4 cut(s) 33, 215, 317, 414
BtsIMutI CAGTG 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 342, 561
CviQI GTAC 2 cut(s) 342, 561
DdeI CTNAG 3 cut(s) 173, 430, 554
DpnI GATC 3 cut(s) 171, 419, 753
DpnII GATC 3 cut(s) 169, 417, 751
EaeI YGGCCR 2 cut(s) 31, 213
Eco130I CCWWGG 2 cut(s) 247, 312
Eco57I CTGAAG 2 cut(s) 608, 725
Eco81I CCTNAGG 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 247, 312
ErhI CCWWGG 2 cut(s) 247, 312
FaiI YATR 5 cut(s) 131, 464, 710, 780, 796
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 377
FspBI CTAG 3 cut(s) 12, 98, 749
GluI GCNGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 4 cut(s) 33, 215, 317, 414
HapII CCGG 1 cut(s) 320
HinfI GANTC 4 cut(s) 235, 274, 691, 705
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 4 cut(s) 174, 454, 616, 663
Hpy188III TCNNGA 7 cut(s) 139, 158, 278, 641, 749, 759, 774
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 4 cut(s) 476, 533, 647, 723
HpyCH4V TGCA 2 cut(s) 150, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 3 cut(s) 173, 430, 554
Kzo9I GATC 3 cut(s) 169, 417, 751
LmnI GCTCC 2 cut(s) 252, 269
Lsp1109I GCAGC 1 cut(s) 363
MaeI CTAG 3 cut(s) 12, 98, 749
MaeIII GTNAC 2 cut(s) 104, 366
MalI GATC 3 cut(s) 171, 419, 753
MboI GATC 3 cut(s) 169, 417, 751
MboII GAAGA 4 cut(s) 417, 601, 708, 731
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 2 cut(s) 417, 751
MlsI TGGCCA 2 cut(s) 33, 215
MluNI TGGCCA 2 cut(s) 33, 215
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 8 cut(s) 185, 449, 504, 530, 542, 551, 626, 728
Mox20I TGGCCA 2 cut(s) 33, 215
MscI TGGCCA 2 cut(s) 33, 215
MseI TTAA 3 cut(s) 180, 305, 386
Msp20I TGGCCA 2 cut(s) 33, 215
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 550
NciI CCSGG 1 cut(s) 320
NdeII GATC 3 cut(s) 169, 417, 751
NlaIV GGNNCC 1 cut(s) 318
NspV TTCGAA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 274, 691, 705
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 1 cut(s) 378
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PsiI TTATAA 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 2 cut(s) 417, 751
RsaI GTAC 2 cut(s) 343, 562
RsaNI GTAC 2 cut(s) 342, 561
SaqAI TTAA 3 cut(s) 180, 305, 386
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 3 cut(s) 169, 417, 751
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 320
SfcI CTRYAG 1 cut(s) 794
SfuI TTCGAA 1 cut(s) 51
SsiI CCGC 1 cut(s) 266
SspI AATATT 2 cut(s) 384, 502
SspMI CTAG 3 cut(s) 12, 98, 749
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 2 cut(s) 247, 312
TaqI TCGA 1 cut(s) 51
TfiI GAWTC 3 cut(s) 274, 691, 705
Tru1I TTAA 3 cut(s) 180, 305, 386
Tru9I TTAA 3 cut(s) 180, 305, 386
TscAI CASTG 1 cut(s) 634
TseI GCWGC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 489
TspRI CASTG 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 503
XapI RAATTY 5 cut(s) 36, 55, 388, 636, 671
XbaI TCTAGA 1 cut(s) 748
XspI CTAG 3 cut(s) 12, 98, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.