RchiOBHm_Chr1g0339821
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
31254747 .. 31259901
5155 bp
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UTR
Exon/CDS
Intron
PRQ56668

Sequence Viewer

Length: 3141 bp
ATGGAGAGTTTCACATACCTTCATGTCCTGACCCTTCTCCTGTTCATCAACTTTTTACAACCTACCACCGTTGTAAGTTCATTTGGCAATGAAACCGATCGCTTGGCTTTGCTAAAATTCAAAGACTGCATAGCTTCTGATCCACATGGGCTCTTGAACTCATGGAATGACTCCGTTCAATACTGCAAATGGCCTGGAATTACTTGTGGCAAACGACATCAAAGAGTAACAGCCTTGTACCTACCACACGCTGTTTTGCACGGAACCATATCACCATACATTGGCAACCTCTCCTTTCTCAGGGACTTCAGCCTTTACAACAACAGCTTCTCTGGTAAGATTCCGCAACAAATGTTCAACTTATTCCGACTGCGACGTCTCAGTCTCAGTACCAACATGTTGGAGGGGGGAATTCCAGTCAACCTGACCTTGTGCGCAGAACTGAGCTACTTAAATATTGGAGAAAACAGCTTTACCGGCAAAATTCCTTCAGAGATCGGGTCATTGAGGAAGCTTGTGGATCTCACTCTAGAGGAAAACAATCTAACAGGAGCCATCCCACCTTCCTTGGGGAATCTTTCATCACTCACTGGACTTTTTTTGGGATGGAACAATTTGGTGGGCACCATTCCAGAGGTGCTAGGCCAATTGAGAAGCTTATCACTTTTTGCAATTGGTCTCAATAATCTCTCAGGTTTGATCCCTCCCTCCCTTTTTAACATTTCATCTATGAACGGCATCTCACTTACGGGTAATATGTTTAAGGGCAGTATTCCGCCTGGTATAGGCCTAAATATGCCTAATCTCCAGATATTGTTCCTTTCCGGAAATGAATTCTCTGGAGAAATCCCTGCTTCACTTTCCAATGCTTCTCAGCTTCATTTGCTTGATTTTGGGCACAATAATTTTGTTGGCCAACTTCCCGCAAGTTTTGGAAATTTTCCTAATCTCCAGCTGCTCAACTTCGAGATCAATAATCTAGGAAGTAATTCATCAAATGATTTGGGATTTATATCATTGTTGACAAATTGCAGCAATCTGGAGATGTTTTCTATGAGTTATAACAATTTTGGAGGTGTTTTACCCAACTCTGTAGCCAATTTCTCAACTCAACTTACTGAACTCTACCTTGGGGGTAATCAAATAGCGGGAACGATTCCTAAAGCATTAGGAAATCTCAACAGTTTAATACACTTGAGCCTGGAACATAACTTGTTCACTGGTATCATTCCAGCTTCTTTTGGGAAGTTGCAAAAACTGCAAAGATTATTTTTAAATTCCAATAGATTATCAGGACGGATCCCATCTTCACTTGGAAACCTCACCCAATTGTTTCTACTCTACTTATTAAAAAATGAATTACAAGGAAGCATTCCACCAAATATTGGTAACTGCCAAAATCTACAGGTGATGGATATATCACACAATAAGCTTAGTGGAGATATACCATCACAGGTCATAGGCCTGTCCTCCTTCTCTGTCAAGCTCAATTTATCGCAAAACTTGCTAACAGGCACTCTGCCTGTGGAAGTGGGTAAGCTGAAGAATATCAACACACTCGATATCTCTGATAATAATTTGACCGGAGGAATTCCAGAAATTATTGGAGGTTGTCTGAGCCTTGAATTTCTTTACCTCCAAGGGAACCACTTTCAAGGAATCATACCTTCTTCTTTGGCTGCTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTTTCAGGGCATATTCCAAAAGACCTACAGAGACTTCCATTCTTGATCCATTTGAACCTTTCGTTCAATAATCTGGAGGGTGAGGTACCGAAAGAAAGAGTTTTTCGAACCACAAGTGCAATATCATTGGATGGAAATGCCAAACTTTGTGGAGGTGTTTCAGAATTGCAGCTACCAGCATGCCCCATCAAAGTACCAAAGCAGAGAAAGTGGCATGGTTTCAAACTAAAGTTCACAATTTCCTTTGTCTCTGGATGCTTTCTTCTATCTTCAGTCGTCTTAGCTCTTTATTGGAGGAGAAAAACTCAAAAGAAGAAACCATTAATAGCAGTGTCATCAATTAACTTCCTTCCAAAGGTTTCATACCAAACGCTTCATCATGCTACTGGCGGATTCTCTCCGAGCAATCAAATTGGATCAGGCGGTTTTGGCTCTATATACAAAGGGATTCTTAATCAAGAAGAAACAAATGTTGTTGCCATCAAAGTCCTCAACCTTCAACAGAAAGGTGCTTCCAAGAGTTTTGTGGTTGAATGCAATGCACTGAGAAATATACGGCACAGGAACTTTGTGAAGATCTTGACATGTTGCTCCAGCACGGATTACAATGGTAATGACTTCAAAGCTCTAGTTTTTGAGTATATGTCAAATGGAAGTTTAGACGAGTGGCTACATAGAGAAAATCAATCAAGGAGTTTGAACCTTCTTCAAAGACTGAATATTGCTATTGATTTGGCTTCTGCATTGTGTTATCTTCATGACCATTGTAAACCACATATCATTCACTGCGACATGAAGCCGAGCAACGTTCTTCTTGATGATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTAGCAAGACTCATCTCAACGACCACGGACTCCTATCAAAATCAAAGTAGCACAGTTGGAATAAAGGGAACCATTGGCTATGTTGCTCCAGAGTATGCGAGTGGTGTTGAGCCATCAAGACAAGGGGATATATATAGTTACGGGGTGCTCGTGTTGCAAATGTTCACAGGAAGAAGACCTATCGACGAAATGTTTAAAGAGGGTTTGAACCTCCATAACTTTGTCAAGATGGCCATACCAGGAAGAGTGATACAGATTATAGATCCTACTCTTCTTACCACTTTAGAAGAGACAACACCTGCAACATCACAAAATGTAGTGAACTACATCAATGGTTACAATAGTGAAATCAAAGCAGTTGAAGAAGACATTGGCAATGAGAATTTAAGCAAGATGAGCACTTATGTGTGGAAGTGCATACTTCCAACCCTTAAGATTGCACTTGCATGCTCGGAAGAATTACCAAGGAATAGAATGTCTATGGAAGAGGTCCACAGGAAGTTACACCATATAAAATATGCTTACTATGATGTTGACATCTGTCAAGAAAGGCCAAGAAGAAGCTGA

Protein Analysis

1046

Amino Acids

115.43

Weight (kDa)

8.52

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 69 9.5e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 147 - 221 9e-06 Leucine-rich repeat region
LRR_8 PF13855 371 - 430 9.2e-11 Leucine rich repeat
LRR_8 PF13855 396 - 454 1e-05 Leucine rich repeat
LRR_14 PF23598 504 - 601 3.6e-07 Leucine-rich repeat region
LRR_8 PF13855 541 - 599 3.5e-08 Leucine rich repeat
Pkinase PF00069 709 - 932 3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 710 - 924 2.1e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
AarI CACCTGC 1 cut(s) 2881
AasI GACNNNNNNGTC 2 cut(s) 375, 381
AatII GACGTC 1 cut(s) 379
Acc16I TGCGCA 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 2881
Acc65I GGTACC 1 cut(s) 1807
AccB1I GGYRCC 2 cut(s) 623, 1807
AccB7I CCANNNNNTGG 2 cut(s) 281, 1385
AccIII TCCGGA 1 cut(s) 824
AciI CCGC 6 cut(s) 344, 776, 924, 1148, 2112, 2145
AclI AACGTT 1 cut(s) 2529
AclWI GGATC 8 cut(s) 134, 528, 694, 1294, 1307, 1762, 2146, 2831
AcoI YGGCCR 2 cut(s) 913, 2805
AcsI RAATTY 9 cut(s) 116, 411, 483, 833, 937, 1276, 1590, 1625, 2956
AcuI CTGAAG 5 cut(s) 292, 474, 1562, 1679, 1977
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 4 cut(s) 239, 391, 1809, 1917
AfiI CCNNNNNNNGG 6 cut(s) 281, 300, 569, 785, 1385, 2077
AflII CTTAAG 1 cut(s) 3005
AflIII ACRYGT 2 cut(s) 396, 2306
AjnI CCWGG 4 cut(s) 193, 778, 1200, 2812
AjuI GAANNNNNNNTTGG 4 cut(s) 1113, 1145, 2928, 2960
AleI CACNNNNGTG 1 cut(s) 2978
Alw21I GWGCWC 2 cut(s) 2724, 2975
Alw26I GTCTC 6 cut(s) 383, 389, 683, 1747, 1975, 2858
AlwI GGATC 8 cut(s) 134, 528, 694, 1294, 1307, 1762, 2146, 2831
Aor13HI TCCGGA 1 cut(s) 824
AoxI GGCC 7 cut(s) 191, 643, 787, 913, 1462, 2805, 3125
ApeKI GCWGC 4 cut(s) 955, 1032, 1679, 1891
ApoI RAATTY 9 cut(s) 116, 411, 483, 833, 937, 1276, 1590, 1625, 2956
AseI ATTAAT 1 cut(s) 2045
Asp700I GAANNNNTTC 1 cut(s) 988
Asp718I GGTACC 1 cut(s) 1807
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 3064
AsuHPI GGTGA 5 cut(s) 264, 1315, 1420, 1814, 2576
AsuII TTCGAA 1 cut(s) 1828
AvaII GGWCC 1 cut(s) 3064
BaeGI GKGCMC 2 cut(s) 626, 900
BalI TGGCCA 2 cut(s) 915, 2807
BamHI GGATCC 1 cut(s) 1299
BanI GGYRCC 2 cut(s) 623, 1807
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 2 cut(s) 2556, 2723
BbsI GAAGAC 3 cut(s) 1685, 2755, 2946
Bbv12I GWGCWC 2 cut(s) 2724, 2975
BbvI GCAGC 4 cut(s) 942, 1044, 1666, 1903
BceAI ACGGC 2 cut(s) 751, 2294
BciT130I CCWGG 4 cut(s) 195, 780, 1202, 2814
BcoDI GTCTC 6 cut(s) 383, 389, 683, 1747, 1975, 2858
BfaI CTAG 5 cut(s) 530, 641, 980, 1703, 2351
BfmI CTRYAG 3 cut(s) 1092, 1403, 1748
BfrI CTTAAG 1 cut(s) 3005
BfuAI ACCTGC 1 cut(s) 2881
BglII AGATCT 2 cut(s) 1705, 2298
BisI GCNGC 4 cut(s) 956, 1033, 1680, 1892
BlsI GCNGC 4 cut(s) 957, 1034, 1681, 1893
Bme1390I CCNGG 4 cut(s) 195, 780, 1202, 2814
Bme18I GGWCC 1 cut(s) 3064
BmgT120I GGNCC 1 cut(s) 3064
BmiI GGNNCC 7 cut(s) 265, 553, 625, 1301, 1646, 1809, 2644
BmrFI CCNGG 4 cut(s) 195, 780, 1202, 2814
BmsI GCATC 2 cut(s) 747, 1967
BoxI GACNNNNGTC 1 cut(s) 3114
BpiI GAAGAC 3 cut(s) 1685, 2755, 2946
BplI GAGNNNNNCTC 2 cut(s) 2011, 2043
BpmI CTGGAG 7 cut(s) 791, 861, 935, 1061, 1817, 2299, 2646
Bpu14I TTCGAA 1 cut(s) 1828
BpuEI CTTGAG 1 cut(s) 1216
BsaBI GATNNNNATC 1 cut(s) 1012
BsaHI GRCGYC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 5 cut(s) 567, 1129, 1639, 2598, 3038
BsaWI WCCGGW 2 cut(s) 824, 1583
Bsc4I CCNNNNNNNGG 6 cut(s) 281, 300, 569, 785, 1385, 2077
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 4 cut(s) 416, 595, 1225, 2113
Bse3DI GCAATG 3 cut(s) 94, 2266, 2956
Bse8I GATNNNNATC 1 cut(s) 1012
BseAI TCCGGA 1 cut(s) 824
BseBI CCWGG 4 cut(s) 195, 780, 1202, 2814
BseDI CCNNGG 5 cut(s) 567, 1129, 1639, 2598, 3038
BseGI GGATG 4 cut(s) 555, 611, 1858, 1982
BseJI GATNNNNATC 1 cut(s) 1012
BseLI CCNNNNNNNGG 6 cut(s) 281, 300, 569, 785, 1385, 2077
BseMI GCAATG 3 cut(s) 94, 2266, 2956
BseMII CTCAG 8 cut(s) 313, 394, 400, 434, 705, 887, 1607, 2258
BseNI ACTGG 4 cut(s) 416, 595, 1225, 2113
BseRI GAGGAG 1 cut(s) 2032
BseSI GKGCMC 2 cut(s) 626, 900
BseXI GCAGC 4 cut(s) 942, 1044, 1666, 1903
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 7 cut(s) 193, 645, 789, 915, 1464, 2807, 3127
BshNI GGYRCC 2 cut(s) 623, 1807
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 2724, 2975
BsiSI CCGG 3 cut(s) 477, 825, 1584
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 6 cut(s) 281, 300, 569, 785, 1385, 2077
BsmAI GTCTC 6 cut(s) 383, 389, 683, 1747, 1975, 2858
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 2 cut(s) 1371, 2261
BsnI GGCC 7 cut(s) 193, 645, 789, 915, 1464, 2807, 3127
Bso31I GGTCTC 1 cut(s) 683
Bsp119I TTCGAA 1 cut(s) 1828
Bsp1286I GDGCHC 5 cut(s) 153, 626, 900, 2724, 2975
Bsp13I TCCGGA 1 cut(s) 824
BspACI CCGC 6 cut(s) 344, 776, 924, 1148, 2112, 2145
BspANI GGCC 7 cut(s) 193, 645, 789, 915, 1464, 2807, 3127
BspCNI CTCAG 8 cut(s) 312, 393, 399, 435, 704, 886, 1608, 2259
BspEI TCCGGA 1 cut(s) 824
BspHI TCATGA 1 cut(s) 2479
BspLI GGNNCC 7 cut(s) 265, 553, 625, 1301, 1646, 1809, 2644
BspMI ACCTGC 1 cut(s) 2881
BspPI GGATC 8 cut(s) 134, 528, 694, 1294, 1307, 1762, 2146, 2831
BspT104I TTCGAA 1 cut(s) 1828
BspT107I GGYRCC 2 cut(s) 623, 1807
BspTI CTTAAG 1 cut(s) 3005
BspTNI GGTCTC 1 cut(s) 683
BsrDI GCAATG 3 cut(s) 94, 2266, 2956
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 4 cut(s) 416, 595, 1225, 2113
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 5 cut(s) 567, 1129, 1639, 2598, 3038
BssNI GRCGYC 1 cut(s) 376
BssSI CACGAG 2 cut(s) 2556, 2723
BssT1I CCWWGG 4 cut(s) 567, 1129, 1639, 3038
Bst2BI CACGAG 2 cut(s) 2556, 2723
Bst2UI CCWGG 4 cut(s) 195, 780, 1202, 2814
Bst4CI ACNGT 3 cut(s) 70, 1184, 2629
Bst6I CTCTTC 4 cut(s) 2812, 2850, 2856, 3054
BstACI GRCGYC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 3005
BstAPI GCANNNNNTGC 2 cut(s) 1258, 1504
BstBI TTCGAA 1 cut(s) 1828
BstC8I GCNNGC 2 cut(s) 1903, 3022
BstDSI CCRYGG 1 cut(s) 2598
BstENI CCTNNNNNAGG 3 cut(s) 298, 783, 2075
BstF5I GGATG 4 cut(s) 555, 611, 1858, 1982
BstHHI GCGC 1 cut(s) 437
BstMAI GTCTC 6 cut(s) 383, 389, 683, 1747, 1975, 2858
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 7 cut(s) 477, 883, 1258, 1504, 2151, 2728, 2970
BstNI CCWGG 4 cut(s) 195, 780, 1202, 2814
BstNSI RCATGY 4 cut(s) 400, 1905, 2310, 3024
BstPAI GACNNNNGTC 1 cut(s) 3114
BstSCI CCNGG 4 cut(s) 193, 778, 1200, 2812
BstSFI CTRYAG 3 cut(s) 1092, 1403, 1748
BstSLI GKGCMC 2 cut(s) 626, 900
BstV1I GCAGC 4 cut(s) 942, 1044, 1666, 1903
BstV2I GAAGAC 3 cut(s) 1685, 2755, 2946
BstX2I RGATCY 5 cut(s) 520, 1299, 1705, 2298, 2836
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 5 cut(s) 520, 1299, 1705, 2298, 2836
BsuRI GGCC 7 cut(s) 193, 645, 789, 915, 1464, 2807, 3127
BtgI CCRYGG 1 cut(s) 2598
BtsCI GGATG 4 cut(s) 555, 611, 1858, 1982
BtsI GCAGTG 2 cut(s) 2058, 2506
BtsIMutI CAGTG 5 cut(s) 588, 1218, 2058, 2264, 2506
BveI ACCTGC 1 cut(s) 2881
Cac8I GCNNGC 2 cut(s) 1903, 3022
CciI TCATGA 1 cut(s) 2479
CfoI GCGC 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 3064
Csp6I GTAC 4 cut(s) 238, 390, 1808, 1916
CspCI CAANNNNNGTGG 4 cut(s) 549, 584, 1852, 1887
CviQI GTAC 4 cut(s) 238, 390, 1808, 1916
DraI TTTAAA 2 cut(s) 1275, 2770
DrdI GACNNNNNNGTC 2 cut(s) 375, 381
DseDI GACNNNNNNGTC 2 cut(s) 375, 381
EaeI YGGCCR 2 cut(s) 913, 2805
Eam1104I CTCTTC 4 cut(s) 2812, 2850, 2856, 3054
EarI CTCTTC 4 cut(s) 2812, 2850, 2856, 3054
EciI GGCGGA 2 cut(s) 765, 2127
Eco130I CCWWGG 4 cut(s) 567, 1129, 1639, 3038
Eco147I AGGCCT 2 cut(s) 789, 1464
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 1564
Eco47I GGWCC 1 cut(s) 3064
Eco57I CTGAAG 5 cut(s) 292, 474, 1562, 1679, 1977
EcoNI CCTNNNNNAGG 3 cut(s) 298, 783, 2075
EcoRI GAATTC 3 cut(s) 411, 833, 1590
EcoRII CCWGG 4 cut(s) 193, 778, 1200, 2812
EcoRV GATATC 1 cut(s) 1564
EcoT14I CCWWGG 4 cut(s) 567, 1129, 1639, 3038
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 4 cut(s) 567, 1129, 1639, 3038
Esp3I CGTCTC 1 cut(s) 383
FalI AAGNNNNNCTT 2 cut(s) 2157, 2189
FaqI GGGAC 1 cut(s) 317
FauI CCCGC 2 cut(s) 931, 1141
Fnu4HI GCNGC 4 cut(s) 956, 1033, 1680, 1892
FokI GGATG 4 cut(s) 542, 618, 1865, 1989
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 956, 1033, 1680, 1892
FspBI CTAG 5 cut(s) 530, 641, 980, 1703, 2351
FspI TGCGCA 1 cut(s) 436
GlaI GCGC 1 cut(s) 436
GluI GCNGC 4 cut(s) 956, 1033, 1680, 1892
GsuI CTGGAG 7 cut(s) 791, 861, 935, 1061, 1817, 2299, 2646
HaeIII GGCC 7 cut(s) 193, 645, 789, 915, 1464, 2807, 3127
HapII CCGG 3 cut(s) 477, 825, 1584
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 376
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HincII GTYRAC 3 cut(s) 421, 1023, 3109
HindII GTYRAC 3 cut(s) 421, 1023, 3109
HindIII AAGCTT 3 cut(s) 512, 655, 1430
HinfI GANTC 9 cut(s) 170, 340, 574, 1156, 1659, 2115, 2170, 2583, 2603
HpaII CCGG 3 cut(s) 477, 825, 1584
HphI GGTGA 5 cut(s) 264, 1315, 1420, 1814, 2576
Hpy166II GTNNAC 9 cut(s) 421, 1023, 1218, 1956, 2492, 2739, 2896, 3067, 3109
Hpy188I TCNGA 8 cut(s) 139, 368, 493, 1570, 1617, 1885, 2124, 3028
Hpy8I GTNNAC 9 cut(s) 421, 1023, 1218, 1956, 2492, 2739, 2896, 3067, 3109
Hpy99I CGWCG 2 cut(s) 378, 2762
HpyAV CCTTC 9 cut(s) 29, 44, 498, 573, 1483, 1677, 2081, 2228, 2435
HpyCH4III ACNGT 3 cut(s) 70, 1184, 2629
HpyCH4IV ACGT 2 cut(s) 376, 2529
HpyF10VI GCNNNNNNNGC 7 cut(s) 477, 883, 1258, 1504, 2151, 2728, 2970
HpySE526I ACGT 2 cut(s) 376, 2529
Hsp92I GRCGYC 1 cut(s) 376
HspAI GCGC 1 cut(s) 435
Kpn2I TCCGGA 1 cut(s) 824
KpnI GGTACC 1 cut(s) 1811
LmnI GCTCC 3 cut(s) 551, 2318, 2665
Lsp1109I GCAGC 4 cut(s) 942, 1044, 1666, 1903
LweI GCATC 2 cut(s) 747, 1967
MaeI CTAG 5 cut(s) 530, 641, 980, 1703, 2351
MaeII ACGT 2 cut(s) 376, 2529
MaeIII GTNAC 5 cut(s) 226, 1388, 2711, 2909, 3075
MfeI CAATTG 3 cut(s) 647, 672, 1328
MflI RGATCY 5 cut(s) 520, 1299, 1705, 2298, 2836
MhlI GDGCHC 5 cut(s) 153, 626, 900, 2724, 2975
MlsI TGGCCA 2 cut(s) 915, 2807
MluNI TGGCCA 2 cut(s) 915, 2807
MlyI GAGTC 3 cut(s) 164, 2577, 2597
MmeI TCCRAC 4 cut(s) 381, 391, 2611, 3023
Mox20I TGGCCA 2 cut(s) 915, 2807
MroI TCCGGA 1 cut(s) 824
MroXI GAANNNNTTC 1 cut(s) 988
MscI TGGCCA 2 cut(s) 915, 2807
MslI CAYNNNNRTG 2 cut(s) 2978, 3019
Msp20I TGGCCA 2 cut(s) 915, 2807
MspA1I CMGCKG 1 cut(s) 955
MspCI CTTAAG 1 cut(s) 3005
MspI CCGG 3 cut(s) 477, 825, 1584
MspR9I CCNGG 4 cut(s) 195, 780, 1202, 2814
MunI CAATTG 3 cut(s) 647, 672, 1328
Mva1269I GAATGC 2 cut(s) 1371, 2261
MvaI CCWGG 4 cut(s) 195, 780, 1202, 2814
MwoI GCNNNNNNNGC 7 cut(s) 477, 883, 1258, 1504, 2151, 2728, 2970
NlaIV GGNNCC 7 cut(s) 265, 553, 625, 1301, 1646, 1809, 2644
NmeAIII GCCGAG 1 cut(s) 2547
NsbI TGCGCA 1 cut(s) 436
NspI RCATGY 4 cut(s) 400, 1905, 2310, 3024
NspV TTCGAA 1 cut(s) 1828
OliI CACNNNNGTG 1 cut(s) 2978
PaeI GCATGC 2 cut(s) 1905, 3024
PagI TCATGA 1 cut(s) 2479
PaqCI CACCTGC 1 cut(s) 2881
PceI AGGCCT 2 cut(s) 789, 1464
PciI ACATGT 2 cut(s) 396, 2306
PcsI WCGNNNNNNNCGW 1 cut(s) 2721
PctI GAATGC 2 cut(s) 1371, 2261
PdmI GAANNNNTTC 1 cut(s) 988
PfeI GAWTC 6 cut(s) 340, 574, 1156, 1659, 2115, 2170
PflMI CCANNNNNTGG 2 cut(s) 281, 1385
PkrI GCNGC 4 cut(s) 957, 1034, 1681, 1893
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 3 cut(s) 164, 2577, 2597
PpsI GAGTC 3 cut(s) 164, 2577, 2597
PscI ACATGT 2 cut(s) 396, 2306
PshAI GACNNNNGTC 1 cut(s) 3114
PshBI ATTAAT 1 cut(s) 2045
PsiI TTATAA 1 cut(s) 1062
Psp1406I AACGTT 1 cut(s) 2529
Psp6I CCWGG 4 cut(s) 193, 778, 1200, 2812
PspGI CCWGG 4 cut(s) 193, 778, 1200, 2812
PspN4I GGNNCC 7 cut(s) 265, 553, 625, 1301, 1646, 1809, 2644
PspPI GGNCC 1 cut(s) 3064
PsuI RGATCY 5 cut(s) 520, 1299, 1705, 2298, 2836
PvuI CGATCG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 955
RsaI GTAC 4 cut(s) 239, 391, 1809, 1917
RsaNI GTAC 4 cut(s) 238, 390, 1808, 1916
RseI CAYNNNNRTG 2 cut(s) 2978, 3019
SatI GCNGC 4 cut(s) 956, 1033, 1680, 1892
Sau96I GGNCC 1 cut(s) 3064
SchI GAGTC 3 cut(s) 164, 2577, 2597
ScrFI CCNGG 4 cut(s) 195, 780, 1202, 2814
SduI GDGCHC 5 cut(s) 153, 626, 900, 2724, 2975
SfaNI GCATC 2 cut(s) 747, 1967
SfcI CTRYAG 3 cut(s) 1092, 1403, 1748
SfuI TTCGAA 1 cut(s) 1828
SinI GGWCC 1 cut(s) 3064
SmiMI CAYNNNNRTG 2 cut(s) 2978, 3019
SmlI CTYRAG 2 cut(s) 1195, 3005
SmoI CTYRAG 2 cut(s) 1195, 3005
SphI GCATGC 2 cut(s) 1905, 3024
SseBI AGGCCT 2 cut(s) 789, 1464
SsiI CCGC 6 cut(s) 344, 776, 924, 1148, 2112, 2145
SspI AATATT 3 cut(s) 457, 1384, 2443
SspMI CTAG 5 cut(s) 530, 641, 980, 1703, 2351
StuI AGGCCT 2 cut(s) 789, 1464
StyD4I CCNGG 4 cut(s) 193, 778, 1200, 2812
StyI CCWWGG 4 cut(s) 567, 1129, 1639, 3038
TaaI ACNGT 3 cut(s) 70, 1184, 2629
TaiI ACGT 2 cut(s) 379, 2532
TaqI TCGA 4 cut(s) 966, 1560, 1828, 2757
TfiI GAWTC 6 cut(s) 340, 574, 1156, 1659, 2115, 2170
TscAI CASTG 5 cut(s) 595, 1225, 2058, 2271, 2513
TseI GCWGC 4 cut(s) 955, 1032, 1679, 1891
TspGWI ACGGA 5 cut(s) 163, 276, 1312, 2336, 2615
TspRI CASTG 5 cut(s) 595, 1225, 2058, 2271, 2513
Van91I CCANNNNNTGG 2 cut(s) 281, 1385
Vha464I CTTAAG 1 cut(s) 3005
VpaK11BI GGWCC 1 cut(s) 3064
VspI ATTAAT 1 cut(s) 2045
XagI CCTNNNNNAGG 3 cut(s) 298, 783, 2075
XapI RAATTY 9 cut(s) 116, 411, 483, 833, 937, 1276, 1590, 1625, 2956
XbaI TCTAGA 2 cut(s) 529, 1702
XceI RCATGY 4 cut(s) 400, 1905, 2310, 3024
XcmI CCANNNNNNNNNTGG 1 cut(s) 2245
XmnI GAANNNNTTC 1 cut(s) 988
XspI CTAG 5 cut(s) 530, 641, 980, 1703, 2351
ZraI GACGTC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.