RLG00000027045
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
7893676 .. 7897551
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027045

Sequence Viewer

Length: 3201 bp
ATGCATGCACAAGTTTCTCACCATCTAGATTTCCTGCTTCTGCAAACCAAATTAATGGAGCTTTCTCATGTACCCAATTTTTCAGCATTTTGGTATATATACCTTCACGTCATAATCCTTTTCCTTTTCCATCCTACCACTCATGTAAAGGCAATTAGAAATGACACTGATCGATTGGCTTTGCTGAAATTCAAAGAAGCCATAGCCACTGATCCAGATGGGTTCTTGAAGTCATGGAATGACTCCTTGCACTATTGCAATTGGCATGGGATCACTTGCGGCAGAAGGCATCAAAGAGTAGTAGCCATGAACCTTTCTCATTCTAATTTGCATGGAACCATATCACCTTACATTGGCAACCTCTCATTTCTTAGGTTCATCAACCTTCGAAATAACAGCTTCTCCGGCAAGATTCCACAACAAGTAGATCATTTGTTCCGACTGCGCCATCTCAATCTAAGTTACAACAAGTTGGAGGGCGGAATTCCAGTCAACCTCACATTCTGCTCAGAATTGAGCATCATAAGTCTTGCATCAAACCCCCTTAACGGCCAAATTCCGTCAGAGATTGGCTTATTGGAGAAGCTTGAGACTCTTAATCTCCAGCGTAACAATCTGACAGGAGGTATCCCACCTTCCTTGGGAAATCTCTCATCAATTAGGCATTTTGCCTTAGGATATAACAATTTGGTGGGTAATGTTCCAGACGAGATTGGACGATTGCAAAGCTTATCTGTATTTTACATCGATGACAATAAGCTCTCTGGTACGATACCTTCCTCCCTTTTTAATATATCATCTATGAAAGACTTGGTACTTGCAGATAATCATTTAAAGGGCAGTTTTCCACTTGGTATAGGCTTAACCATGCCTAATCTCCAGATAGTTATACTTGGTGACAATGAATTATCTGGAAAAATCCCGGCTTCATTTTCTAATGCTTCTCAACTTCAAATATTTGATATTCCCTACAACTTTTTCGTTGGGCCAATTCCTGCAAGTTTTGGAAATCTTCCTGATCTCCATTGGCTCGGTTTGAGCGGCAATAATCTAGGAAATAATTCATCAAATGATTTGGGAGTTGTAACATCCTTGACAAATTGCAGCAAACTAGAAGTACTTGATATGAGTGATAACAATTTTGGTGATATTTTATCCAACTCTGTAGCCAATTTGTCAACACAAATGACCAAACTCTATTTTGGAGCCAACCATATATCAGGAATGATTCCAGCAACCTTAGCAAATCTCAACAATCTAATAGAACTGGACCTGCATGATAACCTTTTCACAGGTGTCATTCCTACTTCTTTTTCAAAGTTCCAAAAGCTGCAAAAGTTGGGTTTAGATGTTAATCGATTGTCAGGACAGATCCCATCTTCCATAGGAAACCTCACTCAATTATTTCAACTCCTCCTAGAAGAAAATAACTTGGAAGGTAGCATTCCCCAAAGTATTGGAAACTGCCAAAACTTGCAGTACATGACCGTTTCACATAATAACCTTAGTGGAAATGTACCACCACATGTTATTGGTCTTTCCTCCTTATCTCTCTTACTCAACTTATCACAAAACTCACTAACTGGCAATCTGCCTGTGGAAGTGGGTAAGCTGAAGAATATCAATACATTGGACATCTCCCATAACAATTTGTCCGGAGAAATTCCAGATATCATTGGAAACTGTCTGGGCCTTCAATTTCTTTTTCTACAAGGAAATCTCTTTCAAGGAATCATACCTTCTTCTTTGGCTTCTTTGAAAAACCTTGAGTATCTAGATCTATCCCGAAACAACTTGTCAGGAAAAATTCCAAAAAATCTACAAACACTTCCATTCTTGCTACATTTGAACCTTTCTTTCAATAATTTGGAGGGTGAGGTACCAAAAGAAGGAGCTTTTCGAAATACTAGCGCAATATTGTTGGTTGGAAATCCCAAACTTTGTGGTGGTGTTTCGGAATTGCAGCTGCCAGCATGCCCCGTCAAAGCACCAAACCAGAGAAAGAGCCATGGTTTCAACCTAAAGTTCACAGTTTCTCTAGTGGCTGGATGCTCTCTTCTGTTTGCATTCTTGTTTGCTCTTTATTGGAGGAGAAAACAGAAGAAGAAACCATTATCTGCAGAATCATCAATCAGTTTCCTTTCAAAGGTTTCATATCAGACAATTTATCAAGCTACCGGTGGATTCTCCCCAACCACTCTAATTGGATCAGGCAGTTTTGGCTCTGTATACAAAGGGATTCTTGACCAGGAAGAAAACAAGGTAGTTGCCATAAAGGTCCTCAACCTTCAACAGAAAGGAGCTTCCAAGAGTTTCACAGCAGAATGCAATGCACTGAGAAATATCCGGCACAGAAATCTTGTGAAGATCCTAACGTGTTGTGCCAGTATGGATCACAATGGTAATGAATTCAAAGCGCTAGTGTTTGAATATATGTCAAACGGAAGCTTAGAGGAGTGGCTGCATAGTGAAGACCAATCAAGGAGCTTGAACCTTCTTCAAAGATTGAACATTGCTGTTGATGTGGCTTCTGCATTATGTTATCTTCATGAGCATAGTGAACCGCAAATCATTCACCGTGACATGAAGCCAAGTAATGTTCTTCTCGACGATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTAGCAAGACTCATCATGGACTCCTCTCAAAATCAAAGTAGCACTGTTGGAATAAAGGGAACCATCGGTTATGCTGCTCCAGAGTATGCAAGTGGTGTGGAGGCATCAAAACAAGGAGATGTATATAGTTATGGAATCCTTGTATTGGAAATGTTCACAGGAAGACGGCCCACCGACGAATTGTTCAGAGACGGTTTGAATCTCCACAATTTTGTTAAGATGGCAATACCAGGAAGGCTTGTGAAGATTGTGGACCCTGCTCTTCTAGCCACTTTAGAAGAGACAGCAACTGCAACCACAGAAAATGAATTGACCAAGATGAGTCGTTACAACAACGAAGTTGAAGCAGGAGAACAGAACACAGATAATGATGATTTGTGCAAGATGAATGCTTATCTGTGGAACTGCATTTTTCCTATCCTTAAGATCGGACTTGCATGCTCGGAAGAATTACCAAGGAACAGAATGTCTATGGAGGATGTACACAAGGACCTACACCATATACAAAAAGGTTACAATGGTGTTGAGATCCGTCAAGAGAGACCAAGAAGAAGATAG

Protein Analysis

1067

Amino Acids

117.87

Weight (kDa)

6.73

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 55 - 93 1.9e-12 Leucine rich repeat N-terminal domain
LRR_8 PF13855 291 - 351 1.2e-06 Leucine rich repeat
LRR_8 PF13855 395 - 454 3.2e-08 Leucine rich repeat
LRR_14 PF23598 520 - 624 2.1e-08 Leucine-rich repeat region
LRR_8 PF13855 565 - 623 3.3e-07 Leucine rich repeat
Pkinase PF00069 733 - 942 9.7e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 734 - 942 1.6e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1281
Acc65I GGTACC 1 cut(s) 1879
AccB1I GGYRCC 1 cut(s) 1879
AccBSI CCGCTC 1 cut(s) 1041
AccI GTMKAC 1 cut(s) 2229
AccIII TCCGGA 1 cut(s) 1655
AciI CCGC 4 cut(s) 279, 480, 1041, 2564
AclWI GGATC 7 cut(s) 206, 278, 1366, 2215, 2362, 2400, 3166
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 6 cut(s) 188, 483, 555, 1662, 1806, 2408
AcuI CTGAAG 1 cut(s) 1634
AfaI GTAC 8 cut(s) 72, 769, 816, 1119, 1481, 1518, 1881, 3126
AfeI AGCGCT 1 cut(s) 2418
AfiI CCNNNNNNNGG 6 cut(s) 353, 548, 641, 1889, 2146, 2788
AflII CTTAAG 1 cut(s) 3065
AflIII ACRYGT 2 cut(s) 1525, 2375
AgeI ACCGGT 1 cut(s) 2177
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 2 cut(s) 2247, 2872
Alw26I GTCTC 4 cut(s) 584, 2826, 2918, 3178
AlwI GGATC 7 cut(s) 206, 278, 1366, 2215, 2362, 2400, 3166
AlwNI CAGNNNCTG 1 cut(s) 2933
Aor13HI TCCGGA 1 cut(s) 1655
Aor51HI AGCGCT 1 cut(s) 2418
AoxI GGCC 4 cut(s) 550, 986, 1690, 2810
ApeKI GCWGC 6 cut(s) 1104, 1330, 1963, 1966, 2461, 2717
ApoI RAATTY 6 cut(s) 188, 483, 555, 1662, 1806, 2408
AseI ATTAAT 1 cut(s) 53
AsiGI ACCGGT 1 cut(s) 2177
Asp700I GAANNNNTTC 1 cut(s) 1060
Asp718I GGTACC 1 cut(s) 1879
AspLEI GCGC 3 cut(s) 447, 1913, 2419
AspS9I GGNCC 7 cut(s) 986, 1270, 1690, 2278, 2811, 2896, 3133
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 7 cut(s) 11, 336, 908, 1157, 1886, 2567, 2645
AsuII TTCGAA 2 cut(s) 388, 1900
AvaII GGWCC 4 cut(s) 1270, 2278, 2896, 3133
AxyI CCTNAGG 1 cut(s) 673
BanI GGYRCC 1 cut(s) 1879
BarI GAAGNNNNNNTAC 4 cut(s) 619, 651, 760, 792
BauI CACGAG 1 cut(s) 2625
BbsI GAAGAC 2 cut(s) 2478, 2812
BbvI GCAGC 6 cut(s) 1116, 1317, 1953, 1975, 2448, 2704
BccI CCATC 7 cut(s) 30, 138, 212, 456, 1384, 2714, 2857
BceAI ACGGC 2 cut(s) 565, 2825
BciT130I CCWGG 2 cut(s) 2249, 2874
BciVI GTATCC 1 cut(s) 638
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 4 cut(s) 584, 2826, 2918, 3178
BfaI CTAG 9 cut(s) 26, 1052, 1112, 1418, 1775, 1908, 2039, 2420, 2909
BfmI CTRYAG 2 cut(s) 1164, 2118
BfoI RGCGCY 1 cut(s) 2420
BfrI CTTAAG 1 cut(s) 3065
BfuAI ACCTGC 1 cut(s) 1281
BfuI GTATCC 1 cut(s) 638
BglII AGATCT 1 cut(s) 1777
BisI GCNGC 8 cut(s) 280, 1042, 1105, 1331, 1964, 1967, 2462, 2718
BlsI GCNGC 8 cut(s) 281, 1043, 1106, 1332, 1965, 1968, 2463, 2719
BmcAI AGTACT 1 cut(s) 1119
Bme1390I CCNGG 3 cut(s) 923, 2249, 2874
Bme18I GGWCC 4 cut(s) 1270, 2278, 2896, 3133
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 7 cut(s) 986, 1270, 1690, 2278, 2811, 2896, 3133
BmiI GGNNCC 5 cut(s) 337, 1207, 1881, 2704, 2898
BmrFI CCNGG 3 cut(s) 923, 2249, 2874
BmsI GCATC 5 cut(s) 298, 528, 542, 2039, 2756
BpiI GAAGAC 2 cut(s) 2478, 2812
BpmI CTGGAG 3 cut(s) 587, 863, 2706
Bpu10I CCTNAGC 1 cut(s) 1240
Bpu14I TTCGAA 2 cut(s) 388, 1900
BpuEI CTTGAG 2 cut(s) 608, 1787
BpuMI CCSGG 1 cut(s) 923
Bsa29I ATCGAT 3 cut(s) 172, 747, 1357
BsaBI GATNNNNATC 1 cut(s) 1353
BsaI GGTCTC 1 cut(s) 3178
BsaJI CCNNGG 3 cut(s) 639, 2008, 3098
BsaWI WCCGGW 2 cut(s) 1655, 2177
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 6 cut(s) 353, 548, 641, 1889, 2146, 2788
Bse118I RCCGGY 1 cut(s) 2177
Bse1I ACTGG 4 cut(s) 488, 1272, 1588, 2385
Bse21I CCTNAGG 1 cut(s) 673
Bse3DI GCAATG 2 cut(s) 2335, 2511
Bse8I GATNNNNATC 1 cut(s) 1353
BseAI TCCGGA 1 cut(s) 1655
BseBI CCWGG 2 cut(s) 2249, 2874
BseCI ATCGAT 3 cut(s) 172, 747, 1357
BseDI CCNNGG 3 cut(s) 639, 2008, 3098
BseGI GGATG 4 cut(s) 130, 1088, 2054, 3127
BseJI GATNNNNATC 1 cut(s) 1353
BseLI CCNNNNNNNGG 6 cut(s) 353, 548, 641, 1889, 2146, 2788
BseMI GCAATG 2 cut(s) 2335, 2511
BseMII CTCAG 2 cut(s) 522, 2327
BseNI ACTGG 4 cut(s) 488, 1272, 1588, 2385
BseRI GAGGAG 4 cut(s) 1403, 2104, 2468, 2656
BseXI GCAGC 6 cut(s) 1116, 1317, 1953, 1975, 2448, 2704
BshFI GGCC 4 cut(s) 552, 988, 1692, 2812
BshNI GGYRCC 1 cut(s) 1879
BshTI ACCGGT 1 cut(s) 2177
BshVI ATCGAT 3 cut(s) 172, 747, 1357
BsiSI CCGG 5 cut(s) 405, 923, 1656, 2178, 2347
BslI CCNNNNNNNGG 6 cut(s) 353, 548, 641, 1889, 2146, 2788
BsmAI GTCTC 4 cut(s) 584, 2826, 2918, 3178
BsmBI CGTCTC 1 cut(s) 2826
BsmI GAATGC 4 cut(s) 1443, 2066, 2330, 3037
BsnI GGCC 4 cut(s) 552, 988, 1692, 2812
Bso31I GGTCTC 1 cut(s) 3178
Bsp119I TTCGAA 2 cut(s) 388, 1900
Bsp13I TCCGGA 1 cut(s) 1655
Bsp1407I TGTACA 1 cut(s) 3124
Bsp19I CCATGG 1 cut(s) 2008
BspACI CCGC 4 cut(s) 279, 480, 1041, 2564
BspANI GGCC 4 cut(s) 552, 988, 1692, 2812
BspCNI CTCAG 2 cut(s) 521, 2328
BspDI ATCGAT 3 cut(s) 172, 747, 1357
BspEI TCCGGA 1 cut(s) 1655
BspHI TCATGA 1 cut(s) 2548
BspLI GGNNCC 5 cut(s) 337, 1207, 1881, 2704, 2898
BspMAI CTGCAG 1 cut(s) 2122
BspMI ACCTGC 1 cut(s) 1281
BspPI GGATC 7 cut(s) 206, 278, 1366, 2215, 2362, 2400, 3166
BspQI GCTCTTC 1 cut(s) 2910
BspT104I TTCGAA 2 cut(s) 388, 1900
BspT107I GGYRCC 1 cut(s) 1879
BspTI CTTAAG 1 cut(s) 3065
BspTNI GGTCTC 1 cut(s) 3178
BsrBI CCGCTC 1 cut(s) 1041
BsrDI GCAATG 2 cut(s) 2335, 2511
BsrFI RCCGGY 1 cut(s) 2177
BsrGI TGTACA 1 cut(s) 3124
BsrI ACTGG 4 cut(s) 488, 1272, 1588, 2385
BssAI RCCGGY 1 cut(s) 2177
BssECI CCNNGG 3 cut(s) 639, 2008, 3098
BssNAI GTATAC 1 cut(s) 2230
BssSI CACGAG 1 cut(s) 2625
BssT1I CCWWGG 3 cut(s) 639, 2008, 3098
Bst1107I GTATAC 1 cut(s) 2230
Bst2BI CACGAG 1 cut(s) 2625
Bst2UI CCWGG 2 cut(s) 2249, 2874
Bst4CI ACNGT 6 cut(s) 1489, 1685, 2032, 2579, 2689, 2837
Bst6I CTCTTC 3 cut(s) 2061, 2910, 2916
BstAFI CTTAAG 1 cut(s) 3065
BstAUI TGTACA 1 cut(s) 3124
BstBI TTCGAA 2 cut(s) 388, 1900
BstC8I GCNNGC 4 cut(s) 6, 1971, 1975, 3082
BstDEI CTNAG 8 cut(s) 371, 458, 508, 673, 1240, 1505, 2336, 2449
BstDSI CCRYGG 1 cut(s) 2008
BstENI CCTNNNNNAGG 1 cut(s) 2144
BstF5I GGATG 4 cut(s) 130, 1088, 2054, 3127
BstH2I RGCGCY 1 cut(s) 2420
BstHHI GCGC 3 cut(s) 447, 1913, 2419
BstMAI GTCTC 4 cut(s) 584, 2826, 2918, 3178
BstMWI GCNNNNNNNGC 4 cut(s) 405, 1241, 2220, 2909
BstNI CCWGG 2 cut(s) 2249, 2874
BstNSI RCATGY 4 cut(s) 8, 1529, 1977, 3084
BstSCI CCNGG 3 cut(s) 921, 2247, 2872
BstSFI CTRYAG 2 cut(s) 1164, 2118
BstV1I GCAGC 6 cut(s) 1116, 1317, 1953, 1975, 2448, 2704
BstV2I GAAGAC 2 cut(s) 2478, 2812
BstX2I RGATCY 4 cut(s) 1371, 1777, 2367, 3171
BstXI CCANNNNNNTGG 2 cut(s) 55, 1457
BstYI RGATCY 4 cut(s) 1371, 1777, 2367, 3171
BstZ17I GTATAC 1 cut(s) 2230
Bsu15I ATCGAT 3 cut(s) 172, 747, 1357
Bsu36I CCTNAGG 1 cut(s) 673
BsuI GTATCC 1 cut(s) 638
BsuRI GGCC 4 cut(s) 552, 988, 1692, 2812
BsuTUI ATCGAT 3 cut(s) 172, 747, 1357
BtgI CCRYGG 1 cut(s) 2008
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 4 cut(s) 130, 1088, 2054, 3127
BtsIMutI CAGTG 4 cut(s) 165, 207, 2333, 2685
BveI ACCTGC 1 cut(s) 1281
Cac8I GCNNGC 4 cut(s) 6, 1971, 1975, 3082
CaiI CAGNNNCTG 1 cut(s) 2933
CciI TCATGA 1 cut(s) 2548
CfoI GCGC 3 cut(s) 447, 1913, 2419
Cfr10I RCCGGY 1 cut(s) 2177
Cfr13I GGNCC 7 cut(s) 986, 1270, 1690, 2278, 2811, 2896, 3133
ClaI ATCGAT 3 cut(s) 172, 747, 1357
Csp6I GTAC 8 cut(s) 71, 768, 815, 1118, 1480, 1517, 1880, 3125
CspAI ACCGGT 1 cut(s) 2177
CspCI CAANNNNNGTGG 8 cut(s) 621, 656, 1924, 1959, 2185, 2220, 2721, 2756
CviQI GTAC 8 cut(s) 71, 768, 815, 1118, 1480, 1517, 1880, 3125
DdeI CTNAG 8 cut(s) 371, 458, 508, 673, 1240, 1505, 2336, 2449
DraI TTTAAA 1 cut(s) 834
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 3 cut(s) 2061, 2910, 2916
EarI CTCTTC 3 cut(s) 2061, 2910, 2916
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 3 cut(s) 639, 2008, 3098
Eco31I GGTCTC 1 cut(s) 3178
Eco32I GATATC 1 cut(s) 1672
Eco47I GGWCC 4 cut(s) 1270, 2278, 2896, 3133
Eco47III AGCGCT 1 cut(s) 2418
Eco57I CTGAAG 1 cut(s) 1634
Eco81I CCTNAGG 1 cut(s) 673
EcoNI CCTNNNNNAGG 1 cut(s) 2144
EcoO109I RGGNCCY 2 cut(s) 2278, 3133
EcoRI GAATTC 2 cut(s) 483, 2408
EcoRII CCWGG 2 cut(s) 2247, 2872
EcoRV GATATC 1 cut(s) 1672
EcoT14I CCWWGG 3 cut(s) 639, 2008, 3098
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 639, 2008, 3098
Esp3I CGTCTC 1 cut(s) 2826
FalI AAGNNNNNCTT 2 cut(s) 2226, 2258
FblI GTMKAC 1 cut(s) 2229
Fnu4HI GCNGC 8 cut(s) 280, 1042, 1105, 1331, 1964, 1967, 2462, 2718
FokI GGATG 4 cut(s) 117, 1075, 2061, 3134
Fsp4HI GCNGC 8 cut(s) 280, 1042, 1105, 1331, 1964, 1967, 2462, 2718
FspBI CTAG 9 cut(s) 26, 1052, 1112, 1418, 1775, 1908, 2039, 2420, 2909
GlaI GCGC 3 cut(s) 446, 1912, 2418
GluI GCNGC 8 cut(s) 280, 1042, 1105, 1331, 1964, 1967, 2462, 2718
GsuI CTGGAG 3 cut(s) 587, 863, 2706
HaeII RGCGCY 1 cut(s) 2420
HaeIII GGCC 4 cut(s) 552, 988, 1692, 2812
HapII CCGG 5 cut(s) 405, 923, 1656, 2178, 2347
HhaI GCGC 3 cut(s) 447, 1913, 2419
Hin6I GCGC 3 cut(s) 445, 1911, 2417
HinP1I GCGC 3 cut(s) 445, 1911, 2417
HincII GTYRAC 2 cut(s) 493, 1179
HindII GTYRAC 2 cut(s) 493, 1179
HindIII AAGCTT 3 cut(s) 584, 727, 2446
HpaII CCGG 5 cut(s) 405, 923, 1656, 2178, 2347
HphI GGTGA 7 cut(s) 11, 336, 908, 1157, 1886, 2567, 2645
Hpy166II GTNNAC 8 cut(s) 493, 1179, 2028, 2230, 2561, 2799, 2896, 3127
Hpy188I TCNGA 9 cut(s) 440, 511, 565, 618, 1957, 2160, 2831, 3074, 3088
Hpy8I GTNNAC 8 cut(s) 493, 1179, 2028, 2230, 2561, 2799, 2896, 3127
Hpy99I CGWCG 2 cut(s) 2612, 2822
HpyCH4III ACNGT 6 cut(s) 1489, 1685, 2032, 2579, 2689, 2837
HpyCH4IV ACGT 2 cut(s) 108, 2375
HpyF10VI GCNNNNNNNGC 4 cut(s) 405, 1241, 2220, 2909
HpyF3I CTNAG 8 cut(s) 371, 458, 508, 673, 1240, 1505, 2336, 2449
HpySE526I ACGT 2 cut(s) 108, 2375
HspAI GCGC 3 cut(s) 445, 1911, 2417
Kpn2I TCCGGA 1 cut(s) 1655
KpnI GGTACC 1 cut(s) 1883
LguI GCTCTTC 1 cut(s) 2910
LmnI GCTCC 6 cut(s) 58, 1205, 1892, 2300, 2484, 2725
Lsp1109I GCAGC 6 cut(s) 1116, 1317, 1953, 1975, 2448, 2704
LweI GCATC 5 cut(s) 298, 528, 542, 2039, 2756
MaeI CTAG 9 cut(s) 26, 1052, 1112, 1418, 1775, 1908, 2039, 2420, 2909
MaeII ACGT 2 cut(s) 108, 2375
MaeIII GTNAC 7 cut(s) 461, 608, 896, 1084, 2579, 2969, 3155
MbiI CCGCTC 1 cut(s) 1041
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 4 cut(s) 1371, 1777, 2367, 3171
MlyI GAGTC 5 cut(s) 236, 586, 2646, 2657, 2974
MmeI TCCRAC 5 cut(s) 453, 463, 1182, 1906, 2671
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 1655
MroXI GAANNNNTTC 1 cut(s) 1060
MseI TTAA 9 cut(s) 53, 546, 597, 789, 833, 863, 1353, 2859, 3066
MspA1I CMGCKG 1 cut(s) 1966
MspCI CTTAAG 1 cut(s) 3065
MspI CCGG 5 cut(s) 405, 923, 1656, 2178, 2347
MspR9I CCNGG 3 cut(s) 923, 2249, 2874
MunI CAATTG 1 cut(s) 259
Mva1269I GAATGC 4 cut(s) 1443, 2066, 2330, 3037
MvaI CCWGG 2 cut(s) 2249, 2874
MwoI GCNNNNNNNGC 4 cut(s) 405, 1241, 2220, 2909
NciI CCSGG 1 cut(s) 923
NcoI CCATGG 1 cut(s) 2008
NlaIV GGNNCC 5 cut(s) 337, 1207, 1881, 2704, 2898
NmuCI GTSAC 2 cut(s) 896, 2579
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 4 cut(s) 8, 1529, 1977, 3084
NspV TTCGAA 2 cut(s) 388, 1900
PaeI GCATGC 3 cut(s) 8, 1977, 3084
PagI TCATGA 1 cut(s) 2548
PciI ACATGT 1 cut(s) 1525
PciSI GCTCTTC 1 cut(s) 2910
PctI GAATGC 4 cut(s) 1443, 2066, 2330, 3037
PdmI GAANNNNTTC 1 cut(s) 1060
PfeI GAWTC 8 cut(s) 412, 1228, 1731, 2123, 2184, 2239, 2778, 2842
PinAI ACCGGT 1 cut(s) 2177
PkrI GCNGC 8 cut(s) 281, 1043, 1106, 1332, 1965, 1968, 2463, 2719
PleI GAGTC 5 cut(s) 236, 586, 2646, 2657, 2973
PpsI GAGTC 5 cut(s) 236, 586, 2646, 2657, 2973
PpuMI RGGWCCY 2 cut(s) 2278, 3133
PscI ACATGT 1 cut(s) 1525
PshBI ATTAAT 1 cut(s) 53
Psp5II RGGWCCY 2 cut(s) 2278, 3133
Psp6I CCWGG 2 cut(s) 2247, 2872
PspGI CCWGG 2 cut(s) 2247, 2872
PspN4I GGNNCC 5 cut(s) 337, 1207, 1881, 2704, 2898
PspPI GGNCC 7 cut(s) 986, 1270, 1690, 2278, 2811, 2896, 3133
PspPPI RGGWCCY 2 cut(s) 2278, 3133
PstI CTGCAG 1 cut(s) 2122
PstNI CAGNNNCTG 1 cut(s) 2933
PsuI RGATCY 4 cut(s) 1371, 1777, 2367, 3171
PvuII CAGCTG 1 cut(s) 1966
RsaI GTAC 8 cut(s) 72, 769, 816, 1119, 1481, 1518, 1881, 3126
RsaNI GTAC 8 cut(s) 71, 768, 815, 1118, 1480, 1517, 1880, 3125
SapI GCTCTTC 1 cut(s) 2910
SaqAI TTAA 9 cut(s) 53, 546, 597, 789, 833, 863, 1353, 2859, 3066
SatI GCNGC 8 cut(s) 280, 1042, 1105, 1331, 1964, 1967, 2462, 2718
Sau96I GGNCC 7 cut(s) 986, 1270, 1690, 2278, 2811, 2896, 3133
ScaI AGTACT 1 cut(s) 1119
SchI GAGTC 5 cut(s) 236, 586, 2646, 2657, 2974
ScrFI CCNGG 3 cut(s) 923, 2249, 2874
SfaNI GCATC 5 cut(s) 298, 528, 542, 2039, 2756
SfcI CTRYAG 2 cut(s) 1164, 2118
SfuI TTCGAA 2 cut(s) 388, 1900
SinI GGWCC 4 cut(s) 1270, 2278, 2896, 3133
SmlI CTYRAG 3 cut(s) 587, 1766, 3065
SmoI CTYRAG 3 cut(s) 587, 1766, 3065
SphI GCATGC 3 cut(s) 8, 1977, 3084
SsiI CCGC 4 cut(s) 279, 480, 1041, 2564
SspI AATATT 2 cut(s) 957, 1917
SspMI CTAG 9 cut(s) 26, 1052, 1112, 1418, 1775, 1908, 2039, 2420, 2909
StyD4I CCNGG 3 cut(s) 921, 2247, 2872
StyI CCWWGG 3 cut(s) 639, 2008, 3098
TaaI ACNGT 6 cut(s) 1489, 1685, 2032, 2579, 2689, 2837
TaiI ACGT 2 cut(s) 111, 2378
TaqI TCGA 6 cut(s) 172, 388, 747, 1357, 1900, 2607
TatI WGTACW 3 cut(s) 1117, 1479, 3124
TauI GCSGC 2 cut(s) 282, 1044
TfiI GAWTC 8 cut(s) 412, 1228, 1731, 2123, 2184, 2239, 2778, 2842
Tru1I TTAA 9 cut(s) 53, 546, 597, 789, 833, 863, 1353, 2859, 3066
Tru9I TTAA 9 cut(s) 53, 546, 597, 789, 833, 863, 1353, 2859, 3066
TscAI CASTG 4 cut(s) 172, 214, 2340, 2692
TseFI GTSAC 2 cut(s) 896, 2579
TseI GCWGC 6 cut(s) 1104, 1330, 1963, 1966, 2461, 2717
Tsp45I GTSAC 2 cut(s) 896, 2579
TspGWI ACGGA 3 cut(s) 549, 2457, 3164
TspRI CASTG 4 cut(s) 172, 214, 2340, 2692
Vha464I CTTAAG 1 cut(s) 3065
VpaK11BI GGWCC 4 cut(s) 1270, 2278, 2896, 3133
VspI ATTAAT 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 2144
XapI RAATTY 6 cut(s) 188, 483, 555, 1662, 1806, 2408
XbaI TCTAGA 2 cut(s) 25, 1774
XceI RCATGY 4 cut(s) 8, 1529, 1977, 3084
XmiI GTMKAC 1 cut(s) 2229
XmnI GAANNNNTTC 1 cut(s) 1060
XspI CTAG 9 cut(s) 26, 1052, 1112, 1418, 1775, 1908, 2039, 2420, 2909
ZrmI AGTACT 1 cut(s) 1119
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.