Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

7990720 .. 7994469

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAGCCAAGCAACGTTCTTCTTGACGATGACATGGTTGCTCGTGTAGAGTATGCAGTTGGTGTTGAGCCATCAAAACAAGGGGATGTATATAGTTGTGGGATCCTTGTGTTGCACTTGTTCACTGGAAGAAAACCCACTGATGAAATGTTTGTAGACAGTTGCAATATCCATCCTTTCGTCAAGACTGCCATTAAAGGAAGACTTATGAAAGTTGTGGATCCTACTCTTATTGCCACTCTAGAAGAGACCGCAACTTCAACAACAGACAATGAAGTGACTAGCATATACGGTTATAACAAGGAAACCAAAGCAGATGAAGAGAACATTGACGATGAGAATCTAATCAAGATGAACAATTATGTGTTGAAGTGCATACTTCCAACCCTGAAGATTGGACTTGCATGCTCAGAGAAATCACCAAGGAATAGAATGTCTATGAAGGAGTCTCTGGCCTCCTCATTGTGTGGAGAGTGCAGCTGGATGGGAATGTCTTGTGGTTATTGCTCTAGTGATCTGGAAGAGTTGTTGCAGCTCGATGCTCCAGCAGAGTTGGAGCTTGGGCCGCATGGTGCAGGCGATGTCATCGTGGTGTTGATGGTCATGGAGAGCACGTGGGAGTCAAGAACCATCCAGAAACTTGTCAAGACGAAGTCGTTCCTTGTCCAAGAAGGAAGCTTCAGAGTCAGAAATCGAATCCTAGTCAAAACAGGGCATTTTGGCCGAGATTCTTCTTTGGACAGATTTCCAGGGCATTTTTGGAAGGTTATTGCTGCTGAAAATATGAAGGAGAGTCCTAGAGTGATTCCTCAAGATTTTGGGAAGATTATTAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

31.06

Weight (kDa)

5.52

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	2 cut(s)	252, 566
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	4 cut(s)	97, 110, 215, 228
AcoI	YGGCCR	1 cut(s)	721
AcuI	CTGAAG	2 cut(s)	410, 664
AcvI	CACGTG	1 cut(s)	615
AgsI	TTSAA	2 cut(s)	261, 370
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	4 cut(s)	480, 535, 559, 678
AluI	AGCT	4 cut(s)	480, 535, 559, 678
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	2 cut(s)	242, 453
AlwI	GGATC	4 cut(s)	97, 110, 215, 228
AoxI	GGCC	3 cut(s)	453, 563, 721
ApeKI	GCWGC	3 cut(s)	477, 532, 773
Asp700I	GAANNNNTTC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	411
BamHI	GGATCC	2 cut(s)	102, 220
BauI	CACGAG	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	3 cut(s)	489, 544, 760
BccI	CCATC	5 cut(s)	79, 180, 478, 592, 638
BciT130I	CCWGG	1 cut(s)	750
BcoDI	GTCTC	2 cut(s)	242, 453
BfaI	CTAG	5 cut(s)	242, 282, 510, 701, 798
BisI	GCNGC	4 cut(s)	478, 533, 566, 774
BlsI	GCNGC	4 cut(s)	479, 534, 567, 775
Bme1390I	CCNGG	1 cut(s)	750
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	104, 222
BmrFI	CCNGG	1 cut(s)	750
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	422, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bse1I	ACTGG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	2 cut(s)	422, 749
BseGI	GGATG	4 cut(s)	91, 172, 489, 630
BseJI	GATNNNNATC	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	489, 544, 760
BsgI	GTGCAG	2 cut(s)	496, 594
BshFI	GGCC	3 cut(s)	455, 565, 723
BsiHKAI	GWGCWC	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	242, 453
BsnI	GGCC	3 cut(s)	455, 565, 723
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	3 cut(s)	102, 220, 514
BspACI	CCGC	2 cut(s)	252, 566
BspANI	GGCC	3 cut(s)	455, 565, 723
BspCNI	CTCAG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	104, 222
BspPI	GGATC	4 cut(s)	97, 110, 215, 228
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	422, 749
BssMI	GATC	3 cut(s)	102, 220, 514
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	161, 293
Bst6I	CTCTTC	3 cut(s)	240, 315, 516
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	406, 577
BstDEI	CTNAG	1 cut(s)	409
BstF5I	GGATG	4 cut(s)	91, 172, 489, 630
BstKTI	GATC	3 cut(s)	105, 223, 517
BstMAI	GTCTC	2 cut(s)	242, 453
BstMBI	GATC	3 cut(s)	102, 220, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	565
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	489, 544, 760
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	102, 220
BstYI	RGATCY	2 cut(s)	102, 220
BsuRI	GGCC	3 cut(s)	455, 565, 723
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	4 cut(s)	91, 172, 489, 630
BtsIMutI	CAGTG	2 cut(s)	123, 138
Cac8I	GCNNGC	2 cut(s)	406, 577
Cfr13I	GGNCC	1 cut(s)	563
CviAII	CATG	4 cut(s)	34, 405, 569, 604
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	3 cut(s)	104, 222, 516
DpnII	GATC	3 cut(s)	102, 220, 514
EaeI	YGGCCR	1 cut(s)	721
Eam1104I	CTCTTC	3 cut(s)	240, 315, 516
EarI	CTCTTC	3 cut(s)	240, 315, 516
Eco130I	CCWWGG	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	410, 664
Eco72I	CACGTG	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	4 cut(s)	37, 408, 572, 607
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	4 cut(s)	33, 404, 568, 603
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	478, 533, 566, 774
FokI	GGATG	4 cut(s)	98, 159, 496, 617
Fsp4HI	GCNGC	4 cut(s)	478, 533, 566, 774
FspBI	CTAG	5 cut(s)	242, 282, 510, 701, 798
GluI	GCNGC	4 cut(s)	478, 533, 566, 774
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	3 cut(s)	455, 565, 723
Hin1II	CATG	4 cut(s)	37, 408, 572, 607
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	8 cut(s)	340, 446, 620, 684, 696, 728, 793, 805
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	123, 157
Hpy188I	TCNGA	3 cut(s)	412, 683, 689
Hpy188III	TCNNGA	9 cut(s)	23, 184, 242, 349, 518, 624, 634, 646, 812
Hpy8I	GTNNAC	2 cut(s)	123, 157
HpyAV	CCTTC	4 cut(s)	436, 665, 757, 781
HpyCH4III	ACNGT	2 cut(s)	161, 293
HpyCH4IV	ACGT	2 cut(s)	15, 614
HpyCH4V	TGCA	8 cut(s)	56, 115, 165, 375, 404, 477, 532, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	565
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	2 cut(s)	15, 614
Hsp92II	CATG	4 cut(s)	37, 408, 572, 607
Kzo9I	GATC	3 cut(s)	102, 220, 514
LmnI	GCTCC	2 cut(s)	547, 556
Lsp1109I	GCAGC	3 cut(s)	489, 544, 760
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	5 cut(s)	242, 282, 510, 701, 798
MaeII	ACGT	2 cut(s)	15, 614
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	104, 222, 516
MboI	GATC	3 cut(s)	102, 220, 514
MboII	GAAGA	9 cut(s)	11, 141, 213, 257, 332, 403, 533, 723, 835
MflI	RGATCY	2 cut(s)	102, 220
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	4 cut(s)	455, 629, 693, 802
MmeI	TCCRAC	2 cut(s)	407, 534
MnlI	CCTC	3 cut(s)	466, 469, 819
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	195, 831
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	565
NdeII	GATC	3 cut(s)	102, 220, 514
NlaIII	CATG	4 cut(s)	37, 408, 572, 607
NlaIV	GGNNCC	2 cut(s)	104, 222
NmeAIII	GCCGAG	1 cut(s)	749
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	4 cut(s)	340, 696, 728, 805
PflFI	GACNNNGTC	1 cut(s)	652
PkrI	GCNGC	4 cut(s)	479, 534, 567, 775
PleI	GAGTC	4 cut(s)	454, 628, 692, 801
PmaCI	CACGTG	1 cut(s)	615
PmlI	CACGTG	1 cut(s)	615
PpsI	GAGTC	4 cut(s)	454, 628, 692, 801
Ppu21I	YACGTR	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	748
PspCI	CACGTG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	104, 222
PspPI	GGNCC	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	102, 220
PsyI	GACNNNGTC	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	195, 831
SatI	GCNGC	4 cut(s)	478, 533, 566, 774
Sau3AI	GATC	3 cut(s)	102, 220, 514
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	4 cut(s)	455, 629, 693, 802
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	7 cut(s)	18, 482, 537, 561, 617, 680, 768
SfaNI	GCATC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	2 cut(s)	252, 566
SspMI	CTAG	5 cut(s)	242, 282, 510, 701, 798
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	161, 293
TaiI	ACGT	2 cut(s)	18, 617
TaqI	TCGA	2 cut(s)	537, 694
TasI	AATT	1 cut(s)	358
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	4 cut(s)	340, 696, 728, 805
Tru1I	TTAA	2 cut(s)	195, 831
Tru9I	TTAA	2 cut(s)	195, 831
TscAI	CASTG	2 cut(s)	130, 145
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	477, 532, 773
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	8 cut(s)	17, 159, 224, 288, 333, 368, 455, 800
TspRI	CASTG	2 cut(s)	130, 145
Tth111I	GACNNNGTC	1 cut(s)	652
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	756
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	5 cut(s)	242, 282, 510, 701, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.