Rw1G016950
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
37648155 .. 37649594
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016950.1

Sequence Viewer

Length: 1440 bp
ATGGAGAGTTTCACATACCATCAAGTCCTGACCCTTCTCCTTTTCATCAACTTTTTACAACCTACTACTGTTTTAAGTTCATTTGGCAATGAAACCGATCGCTTGGCTTTGCTAAAATTCAAAGATTGCATAGCCTCTGTTCCACATGGGCTATTGAATTCATGGAATGACTCCATTCATTACTGCAAATGGCCTGGAATTACTTGTGGTAGACGACATCAAAGAGTAACAGCCTTGAACCTACCACACGCTGTTTTGTACGGAACCATATCTCCTTACATTGGCAACCTCTCCTTTCTTAGGTTCATCAACCTTCGAAACAACAGCTTCTCTGGCAACATTCCGCAACAAGTTGAACATTTATTCCGACTCCGCCATCTCAATCTCAGTATCAACATGTTGGAGGGGGGAATTCCAGTCAACCTAACCTTCTCCCGCCAATTAAGCATCATAACCATTGCATGGAACCGCCTTACTGGGAAGATTCCTTCAGAGATTGGTTCACTGAAGCTTGTGTGTCTTGATCTTCAGATTAACAATTTGACAGGAGGCATACCACCTTCCTTGGGAAATCTTTCATCAATCACTTTTCTTTCCTTACAAGAGAACAATTTGGTGGGCAACGTACCAGAGGAAATAGGTCGATTGAGAAGCTTATCATTTTTTTCAATTGGTCCTAATAATCTCTCGGGTACGATACCTCCCTCCTTTTTTAACATATCATCTATGAACCGCTTCTCACTTTCAGCTAATAAATTTAAGGGCAGTATTCCACCTGGTATAGGCCTAAACATGCCTAATCTCCAAGTAGTGTACCTTGGTACAAATGAATTCTCTGGCCAAATCCCAGCTTCATTTTCCAATGCTTCTCAGCTTCAGATACTTGATGTTGGGGAAAATAATTTTGTTGGGCAAGTTCCTGCAAGTTTTGGAAATTTTCCCAATCTCCAGCTGCTCAACTTCGAGGTCAATAATCTAGGAACTAATTCATCAAATGATTTGGGATTTATAACATTCTTGACAAATTGCAGCAATTTGTGGCTGTTTTCTATGAGTAATAACAATTTTGGAGGTGTTTTACCCAATTCTGTAGCCAATTTCTCAACCCAACTGACTCAACTCTGCCTTGGGGGCAATCAAATAGCGGGAACGATTCCTGAAACATTAGAAAATCTCAGCAATTTAATACTCCTGACCCTGGAAGAAAACTTGTTCACAGGTACCATTCCAGCTTCTTTTGGGAAGTTACAAAAGCTGCAAGTATTAAGTTTAGATTCCAATAGATTATCAGGCCAGATCAACCTCACCCAATTGTATCACCTCCACTTATTAGAAAATGAATTAGAGGAAGCATTCCTCCAAATATTGGTAACTGCAAAAATCTGCAGCAGTTGGATATATCAGACAATAAGCTTAGTGGAGATATACCATCACAGGTGA

Protein Analysis

479

Amino Acids

52.96

Weight (kDa)

6.59

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 69 5.4e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 266 - 326 7.8e-06 Leucine rich repeat
LRR_8 PF13855 370 - 429 1.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
Acc65I GGTACC 1 cut(s) 1220
AccB1I GGYRCC 1 cut(s) 1220
AccB7I CCANNNNNTGG 2 cut(s) 462, 1366
AccI GTMKAC 1 cut(s) 211
AciI CCGC 6 cut(s) 344, 373, 436, 469, 733, 1145
AcoI YGGCCR 1 cut(s) 838
AcsI RAATTY 6 cut(s) 116, 157, 411, 755, 830, 934
AcuI CTGAAG 4 cut(s) 474, 512, 527, 860
AfaI GTAC 6 cut(s) 260, 627, 694, 815, 823, 1222
AfiI CCNNNNNNNGG 7 cut(s) 281, 300, 462, 566, 782, 1198, 1366
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 5 cut(s) 121, 157, 238, 356, 669
AjnI CCWGG 3 cut(s) 193, 775, 1197
AloI GAACNNNNNNTCC 4 cut(s) 256, 288, 348, 380
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 4 cut(s) 191, 784, 838, 1291
ApeKI GCWGC 4 cut(s) 952, 1029, 1255, 1386
ApoI RAATTY 6 cut(s) 116, 157, 411, 755, 830, 934
Asp700I GAANNNNTTC 3 cut(s) 574, 734, 985
Asp718I GGTACC 1 cut(s) 1220
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 2 cut(s) 1297, 1310
AsuII TTCGAA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 1 cut(s) 674
BalI TGGCCA 1 cut(s) 840
BanI GGYRCC 1 cut(s) 1220
BbvI GCAGC 4 cut(s) 939, 1041, 1242, 1398
BccI CCATC 3 cut(s) 27, 384, 1437
BciT130I CCWGG 3 cut(s) 195, 777, 1199
BfaI CTAG 1 cut(s) 977
BfmI CTRYAG 2 cut(s) 1089, 1384
BglI GCCNNNNNGGC 1 cut(s) 1131
BisI GCNGC 4 cut(s) 953, 1030, 1256, 1387
BlsI GCNGC 4 cut(s) 954, 1031, 1257, 1388
Bme1390I CCNGG 3 cut(s) 195, 777, 1199
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 3 cut(s) 265, 467, 1222
BmrFI CCNGG 3 cut(s) 195, 777, 1199
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 932
Bpu14I TTCGAA 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 564, 817, 1126, 1197
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 685, 715
Bsc4I CCNNNNNNNGG 7 cut(s) 281, 300, 462, 566, 782, 1198, 1366
Bse1I ACTGG 2 cut(s) 416, 481
Bse3DI GCAATG 2 cut(s) 94, 456
BseBI CCWGG 3 cut(s) 195, 777, 1199
BseDI CCNNGG 4 cut(s) 564, 817, 1126, 1197
BseLI CCNNNNNNNGG 7 cut(s) 281, 300, 462, 566, 782, 1198, 1366
BseMI GCAATG 2 cut(s) 94, 456
BseMII CTCAG 3 cut(s) 400, 884, 1189
BseNI ACTGG 2 cut(s) 416, 481
BseXI GCAGC 4 cut(s) 939, 1041, 1242, 1398
BseYI CCCAGC 1 cut(s) 847
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 4 cut(s) 193, 786, 840, 1293
BshNI GGYRCC 1 cut(s) 1220
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 688
BslI CCNNNNNNNGG 7 cut(s) 281, 300, 462, 566, 782, 1198, 1366
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 4 cut(s) 193, 786, 840, 1293
BsoBI CYCGRG 1 cut(s) 688
Bsp119I TTCGAA 1 cut(s) 316
Bsp143I GATC 3 cut(s) 97, 523, 1296
BspACI CCGC 6 cut(s) 344, 373, 436, 469, 733, 1145
BspANI GGCC 4 cut(s) 193, 786, 840, 1293
BspCNI CTCAG 3 cut(s) 399, 883, 1188
BspLI GGNNCC 3 cut(s) 265, 467, 1222
BspMAI CTGCAG 1 cut(s) 1388
BspT104I TTCGAA 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 1220
BsrDI GCAATG 2 cut(s) 94, 456
BsrI ACTGG 2 cut(s) 416, 481
BssECI CCNNGG 4 cut(s) 564, 817, 1126, 1197
BssMI GATC 3 cut(s) 97, 523, 1296
BssT1I CCWWGG 3 cut(s) 564, 817, 1126
Bst2UI CCWGG 3 cut(s) 195, 777, 1199
Bst4CI ACNGT 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 316
BstDEI CTNAG 5 cut(s) 299, 386, 870, 1175, 1414
BstENI CCTNNNNNAGG 2 cut(s) 298, 780
BstKTI GATC 3 cut(s) 100, 526, 1299
BstMBI GATC 3 cut(s) 97, 523, 1296
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 333, 444, 1131
BstNI CCWGG 3 cut(s) 195, 777, 1199
BstNSI RCATGY 2 cut(s) 400, 796
BstSCI CCNGG 3 cut(s) 193, 775, 1197
BstSFI CTRYAG 2 cut(s) 1089, 1384
BstV1I GCAGC 4 cut(s) 939, 1041, 1242, 1398
BsuRI GGCC 4 cut(s) 193, 786, 840, 1293
BtsIMutI CAGTG 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 674
CsiI ACCWGGT 1 cut(s) 775
Csp6I GTAC 6 cut(s) 259, 626, 693, 814, 822, 1221
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviAII CATG 5 cut(s) 146, 162, 397, 462, 793
CviQI GTAC 6 cut(s) 259, 626, 693, 814, 822, 1221
DdeI CTNAG 5 cut(s) 299, 386, 870, 1175, 1414
DpnI GATC 3 cut(s) 99, 525, 1298
DpnII GATC 3 cut(s) 97, 523, 1296
EaeI YGGCCR 1 cut(s) 838
EciI GGCGGA 1 cut(s) 362
Eco130I CCWWGG 3 cut(s) 564, 817, 1126
Eco147I AGGCCT 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 4 cut(s) 474, 512, 527, 860
Eco88I CYCGRG 1 cut(s) 688
EcoNI CCTNNNNNAGG 2 cut(s) 298, 780
EcoRI GAATTC 3 cut(s) 157, 411, 830
EcoRII CCWGG 3 cut(s) 193, 775, 1197
EcoT14I CCWWGG 3 cut(s) 564, 817, 1126
ErhI CCWWGG 3 cut(s) 564, 817, 1126
FaeI CATG 5 cut(s) 149, 165, 400, 465, 796
FatI CATG 5 cut(s) 145, 161, 396, 461, 792
FauI CCCGC 2 cut(s) 443, 1138
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 4 cut(s) 953, 1030, 1256, 1387
Fsp4HI GCNGC 4 cut(s) 953, 1030, 1256, 1387
FspBI CTAG 1 cut(s) 977
GluI GCNGC 4 cut(s) 953, 1030, 1256, 1387
GsaI CCCAGC 1 cut(s) 851
GsuI CTGGAG 1 cut(s) 932
HaeIII GGCC 4 cut(s) 193, 786, 840, 1293
Hin1II CATG 5 cut(s) 149, 165, 400, 465, 796
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 3 cut(s) 509, 652, 1411
HinfI GANTC 6 cut(s) 170, 369, 484, 1114, 1153, 1274
HphI GGTGA 2 cut(s) 1297, 1310
Hpy166II GTNNAC 5 cut(s) 212, 421, 503, 814, 1215
Hpy188I TCNGA 5 cut(s) 368, 493, 531, 879, 1404
Hpy188III TCNNGA 5 cut(s) 28, 521, 1018, 1157, 1192
Hpy8I GTNNAC 5 cut(s) 212, 421, 503, 814, 1215
HpyAV CCTTC 5 cut(s) 44, 323, 439, 498, 570
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 8 cut(s) 129, 186, 461, 923, 1029, 1258, 1376, 1386
HpyF10VI GCNNNNNNNGC 3 cut(s) 333, 444, 1131
HpyF3I CTNAG 5 cut(s) 299, 386, 870, 1175, 1414
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 5 cut(s) 149, 165, 400, 465, 796
KpnI GGTACC 1 cut(s) 1224
Kzo9I GATC 3 cut(s) 97, 523, 1296
Lsp1109I GCAGC 4 cut(s) 939, 1041, 1242, 1398
LweI GCATC 1 cut(s) 456
MabI ACCWGGT 1 cut(s) 775
MaeI CTAG 1 cut(s) 977
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 3 cut(s) 226, 1245, 1369
MalI GATC 3 cut(s) 99, 525, 1298
MboI GATC 3 cut(s) 97, 523, 1296
MboII GAAGA 3 cut(s) 493, 518, 1214
MfeI CAATTG 2 cut(s) 669, 1310
MlsI TGGCCA 1 cut(s) 840
MluNI TGGCCA 1 cut(s) 840
MlyI GAGTC 3 cut(s) 164, 363, 1108
MmeI TCCRAC 3 cut(s) 381, 391, 1373
Mox20I TGGCCA 1 cut(s) 840
MroXI GAANNNNTTC 3 cut(s) 574, 734, 985
MscI TGGCCA 1 cut(s) 840
MseI TTAA 7 cut(s) 74, 443, 534, 714, 759, 1184, 1265
Msp20I TGGCCA 1 cut(s) 840
MspA1I CMGCKG 1 cut(s) 952
MspR9I CCNGG 3 cut(s) 195, 777, 1199
MunI CAATTG 2 cut(s) 669, 1310
Mva1269I GAATGC 1 cut(s) 1352
MvaI CCWGG 3 cut(s) 195, 777, 1199
MwoI GCNNNNNNNGC 3 cut(s) 333, 444, 1131
NdeII GATC 3 cut(s) 97, 523, 1296
NlaIII CATG 5 cut(s) 149, 165, 400, 465, 796
NlaIV GGNNCC 3 cut(s) 265, 467, 1222
NspI RCATGY 2 cut(s) 400, 796
NspV TTCGAA 1 cut(s) 316
PceI AGGCCT 1 cut(s) 786
PciI ACATGT 1 cut(s) 396
PctI GAATGC 1 cut(s) 1352
PdmI GAANNNNTTC 3 cut(s) 574, 734, 985
PfeI GAWTC 3 cut(s) 484, 1153, 1274
PflMI CCANNNNNTGG 2 cut(s) 462, 1366
PkrI GCNGC 4 cut(s) 954, 1031, 1257, 1388
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 3 cut(s) 164, 363, 1108
PpsI GAGTC 3 cut(s) 164, 363, 1108
PscI ACATGT 1 cut(s) 396
PsiI TTATAA 1 cut(s) 1010
Psp6I CCWGG 3 cut(s) 193, 775, 1197
PspFI CCCAGC 1 cut(s) 847
PspGI CCWGG 3 cut(s) 193, 775, 1197
PspN4I GGNNCC 3 cut(s) 265, 467, 1222
PspPI GGNCC 1 cut(s) 674
PstI CTGCAG 1 cut(s) 1388
PvuI CGATCG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 6 cut(s) 260, 627, 694, 815, 823, 1222
RsaNI GTAC 6 cut(s) 259, 626, 693, 814, 822, 1221
SaqAI TTAA 7 cut(s) 74, 443, 534, 714, 759, 1184, 1265
SatI GCNGC 4 cut(s) 953, 1030, 1256, 1387
Sau3AI GATC 3 cut(s) 97, 523, 1296
Sau96I GGNCC 1 cut(s) 674
SchI GAGTC 3 cut(s) 164, 363, 1108
ScrFI CCNGG 3 cut(s) 195, 777, 1199
SexAI ACCWGGT 1 cut(s) 775
SfaNI GCATC 1 cut(s) 456
SfcI CTRYAG 2 cut(s) 1089, 1384
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 1 cut(s) 674
SseBI AGGCCT 1 cut(s) 786
SsiI CCGC 6 cut(s) 344, 373, 436, 469, 733, 1145
SspI AATATT 1 cut(s) 1365
SspMI CTAG 1 cut(s) 977
StuI AGGCCT 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 193, 775, 1197
StyI CCWWGG 3 cut(s) 564, 817, 1126
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 627
TaqI TCGA 3 cut(s) 316, 643, 963
TfiI GAWTC 3 cut(s) 484, 1153, 1274
Tru1I TTAA 7 cut(s) 74, 443, 534, 714, 759, 1184, 1265
Tru9I TTAA 7 cut(s) 74, 443, 534, 714, 759, 1184, 1265
TscAI CASTG 1 cut(s) 510
TseI GCWGC 4 cut(s) 952, 1029, 1255, 1386
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 510
Van91I CCANNNNNTGG 2 cut(s) 462, 1366
VpaK11BI GGWCC 1 cut(s) 674
XagI CCTNNNNNAGG 2 cut(s) 298, 780
XapI RAATTY 6 cut(s) 116, 157, 411, 755, 830, 934
XceI RCATGY 2 cut(s) 400, 796
XmiI GTMKAC 1 cut(s) 211
XmnI GAANNNNTTC 3 cut(s) 574, 734, 985
XspI CTAG 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.