Rw1G012880
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
28685326 .. 28694670
9345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012880.1

Sequence Viewer

Length: 2997 bp
ATGGAGAGTTTCACATACCTTCATGTCCTGACCCTTCTCCTGTTCATCAACTTTTTACAACCTACCACCGTTGTAAGTTCATTTGGCAATGAAACTGATCGCTTGGCTTTGCTAAAATTCAAAGACTGCATAGCTTCTGATCCACATGGGCTGTTGAACTCATGGAATGACTCCGTTCAATACTGCAAATGGCCTGGAATTACTTGTGGCAAACGACATCAAAGAGTAACAGCCTTGTACCTACCACACGCTGTTTTGCACGGAACCATATCACCATACATTGGCAACCTCTCCTTTCTCAGGGACTTCAGCCTTTACAACAACAGCTTCTCTGGTAAGATTCCGCAACAAATGTTCAACTTATTCCAACTACGACGTCTCAGTCTCAGTACCAACATGTTGGAGGGGAGAATTCCAATCAACCTGACATTGTGCGCAGAACTGAGCTACTTAAATATTGGAGAAAATCGCTTTACCGGCAAAATTCCTTCAGAGATCGGGTCATTGAGGAAGCTTGTGCATCTCACTCTAGAGGAAAACAATCTGACAGGAGCCATCCCACCTTCCTTGGGGAATCTTTCATCACTCACTGGACTTTTTTTGGGATGGAACAATTTGGGCAGTATTCCGCCTGGTATAGGCCTAAACATGCCTAATCTCCAGATATTGTTCCTCTCCGAAAATGAATTCTTTGGAGAAATCCCTGCTTCACTTTCCAATGCTTCTCAGCTTCATTCGCTTGATTTTGGGCACAACAATTTTGTTGGCCAACTTCCCGCAAGTTTTGGAAATTTTCCTAATCTCCAGCAGCTCAACTTTGAGGTCAATAATCTAGGAAGTAATTCATCAAATGATTTGGGATTTATATCATTGTTGACAAATTGCAGCAATCTGGAGATGTTTTCTCTGAGTTATAACAATTTTGGAGGTGTTTTACCCAACTCTGTAGCCAATTTCTCAACTCAACTGACTGAACTCTACCTTGGAGGTAATCAAATAGTGGGAACGATTCCTAAAGCATTAGGAAATCTCAACAGTTTAATACACTTGAGCCTGGAACATAACTTGTTCACAGGTATCATTCCAGCTTCTTTTGGGAAGTTGCAAAAATTGCAAAGATTATTTTTAAATTCCAATAGATTATCAGGACGGATCCCATCTTCTCTTGGAAACCTCACCCAATTGTTTCTACTCTACTTATTAGAAAATGAATTAGAAGGAAGTATTCCTCCAAATATTGGTAACTGCCAAAATCTGGAGGTGATGGATATATCACACAATAAGCTTAGTGGAGAAATACCAACACAGGTCATAGGCCTGTCCTCCTTCTCTATCAAGCTCAATTTATCACAAAACTCGCTAACAGGTACTCTGCCTGTGGAAGTGGGTAAGCTGAAGAATATCAATACACTTGATATCTCTGATAATAATTTGACCGGAGGAATTCCAGAAATTATTGGAGGCTGTCTGAGCCTTGAATTTCTTTACCTCCAAGGGAACCACTTTCAAGGAATCATATCTTCTTCTTTGGCTGCTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTGTCAGGACATATTCCAAAAGACCTACAGAGACTTCCATTCTTGATCCATTTGAACCTTTCGTTCAATAATCTAGAAGGTGAGGTACCGAAAGAAAGAGTTTTTCGAAACACAAGTGCAATATCATTGGATGGAAATACCAAACTTTGTGGAGGTGTTTCAGAATTGCAGCTACCAGCATGCCCCATTAAAGTACCAAAGCAAAGAAAGTGGCATGGTTTCAAACTAAAGTTCACAATTTCCTTGGTCTCTGGATGCTCTTTTCTATCTGCAGTCGTCTTAGCACTTTATTGGAGGAGAAAAACTCAAAAGAAGAAACCATTAATAGTAGTGTCATCAATTAACTTCCTTCCAAAGGTTTCATACCAGACGCTTCATCATGCTACTGCCGGATTCTCTCCGAGCAATCAAATTGGATCAGGTGGTTTTGGCTCTGTATACAAAGGGATTCTTAATCAAGAAGAAAACAATGTTGTTGCCATCAAGGTCCTCAACCTTCAACAGAAAGGTGCTTCTAAGAGTTTTGTGGTTGAATGCAATGCACTAAGAAATATCCAGCACAGGAACCTTGTGAAGATCTTGACATGTTGCTCTAGCATGGACTACAATGGTAATGACTTCAAAGCTCTAGTCTTTGAGTATATGTCAAATGGAAGTTTAGAGGAGTGGCTGCATAGAGAAAATCAATCAAGAAGTTTGAACCTTCTTCAAAGACTGAATATTGCTGTTGATTTGGCTTCTGCATTGTATTATCTTCATGACCATTGTGAACCACATATCATTCACTGTGATGTGAAGCCGAGCATTAATGTTCTTCTTGATAATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTGGCAAGACTCATCTCAACGACCACGGACTCCTATCAAAATCAAAGTAGCACGGTTGGAATAAAGGGAACCATTGGCTATGCTGCTCCAGAGTATGCAAGTGGTGTTGAGCCATCAAGACAAGGGGATGTATATAGTTACGGGGTGCTCATGTTGCAATTGTTCACAGGAAGAAGACCTATAGACAAAATGTTTAAAGAGGGTTTGAACCTCCATAACTTTGTCAAGATGGCCATACCAGGAAGAGTGATGCATATTATAGATCCTACTCTTCTTGCCACTTTAGAAGAGACAACACCTGCAACATCACAAAATGTAGTGAACTACATCAATGGTTACAATAATGAAATCGAAGCAGTTGAAGAAAACATTGACAATGAGAATTTAAGCAAGATGAGCCCTTATGTGTGGAAGTGCATACTTCCAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATGTCTATGGAAGAGGTCCACAGGAAGCTACACCATATAAAAGATGCTTACTCTGATATTGACATCTATCAAGAAAGGCCAAGAAGAAGCTGA

Protein Analysis

998

Amino Acids

110.66

Weight (kDa)

7.59

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 69 9e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 94 - 199 1.2e-06 Leucine-rich repeat region
LRR_8 PF13855 322 - 381 4.4e-11 Leucine rich repeat
LRR_8 PF13855 348 - 405 6.8e-06 Leucine rich repeat
LRR_8 PF13855 446 - 502 4.8e-06 Leucine rich repeat
LRR_14 PF23598 447 - 552 1.7e-06 Leucine-rich repeat region
LRR_8 PF13855 492 - 550 6.8e-08 Leucine rich repeat
Pkinase PF00069 660 - 881 3.9e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 661 - 876 1.4e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AarI CACCTGC 1 cut(s) 2737
AasI GACNNNNNNGTC 1 cut(s) 381
AatII GACGTC 1 cut(s) 379
Acc16I TGCGCA 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 2737
Acc65I GGTACC 1 cut(s) 1660
AccB1I GGYRCC 1 cut(s) 1660
AccB7I CCANNNNNTGG 3 cut(s) 281, 1238, 1255
AccI GTMKAC 1 cut(s) 2013
AciI CCGC 3 cut(s) 344, 629, 777
AclWI GGATC 6 cut(s) 134, 1147, 1160, 1615, 1999, 2687
AcoI YGGCCR 2 cut(s) 766, 2661
AcsI RAATTY 9 cut(s) 116, 411, 483, 686, 790, 1129, 1443, 1478, 2812
AcuI CTGAAG 4 cut(s) 292, 474, 1415, 1532
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 5 cut(s) 239, 391, 1369, 1662, 1770
AfiI CCNNNNNNNGG 7 cut(s) 281, 300, 569, 638, 1238, 1255, 1930
AflII CTTAAG 1 cut(s) 2861
AflIII ACRYGT 2 cut(s) 396, 2159
AjnI CCWGG 4 cut(s) 193, 631, 1053, 2668
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
Alw21I GWGCWC 1 cut(s) 2580
Alw26I GTCTC 5 cut(s) 383, 389, 1600, 1828, 2714
AlwI GGATC 6 cut(s) 134, 1147, 1160, 1615, 1999, 2687
AoxI GGCC 6 cut(s) 191, 640, 766, 1315, 2661, 2981
ApeKI GCWGC 6 cut(s) 808, 885, 1532, 1744, 2245, 2513
ApoI RAATTY 9 cut(s) 116, 411, 483, 686, 790, 1129, 1443, 1478, 2812
ArsI GACNNNNNNTTYG 2 cut(s) 2190, 2222
AseI ATTAAT 2 cut(s) 1898, 2382
Asp700I GAANNNNTTC 1 cut(s) 841
Asp718I GGTACC 1 cut(s) 1660
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 2 cut(s) 2062, 2920
AsuHPI GGTGA 6 cut(s) 264, 1168, 1273, 1667, 2432, 2883
AsuII TTCGAA 1 cut(s) 1681
AvaII GGWCC 2 cut(s) 2062, 2920
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 2 cut(s) 768, 2663
BamHI GGATCC 1 cut(s) 1152
BanI GGYRCC 1 cut(s) 1660
BanII GRGCYC 1 cut(s) 2831
BarI GAAGNNNNNNTAC 2 cut(s) 1644, 1676
BauI CACGAG 1 cut(s) 2412
BbsI GAAGAC 2 cut(s) 1538, 2611
Bbv12I GWGCWC 1 cut(s) 2580
BbvI GCAGC 6 cut(s) 820, 897, 1519, 1756, 2232, 2500
BccI CCATC 8 cut(s) 563, 600, 1165, 1258, 1700, 2063, 2551, 2653
BciT130I CCWGG 4 cut(s) 195, 633, 1055, 2670
BcoDI GTCTC 5 cut(s) 383, 389, 1600, 1828, 2714
BfaI CTAG 6 cut(s) 530, 833, 1556, 1649, 2169, 2204
BfmI CTRYAG 4 cut(s) 945, 1601, 1845, 2610
BfrI CTTAAG 1 cut(s) 2861
BfuAI ACCTGC 1 cut(s) 2737
BglII AGATCT 2 cut(s) 1558, 2151
BisI GCNGC 6 cut(s) 809, 886, 1533, 1745, 2246, 2514
BlsI GCNGC 6 cut(s) 810, 887, 1534, 1746, 2247, 2515
Bme1390I CCNGG 4 cut(s) 195, 633, 1055, 2670
Bme18I GGWCC 2 cut(s) 2062, 2920
BmgT120I GGNCC 2 cut(s) 2062, 2920
BmiI GGNNCC 7 cut(s) 265, 553, 1154, 1499, 1662, 2141, 2500
BmrFI CCNGG 4 cut(s) 195, 633, 1055, 2670
BmsI GCATC 4 cut(s) 529, 1820, 2670, 2938
BpiI GAAGAC 2 cut(s) 1538, 2611
BplI GAGNNNNNCTC 2 cut(s) 1864, 1896
BpmI CTGGAG 5 cut(s) 644, 788, 914, 1277, 2502
Bpu14I TTCGAA 1 cut(s) 1681
BpuEI CTTGAG 1 cut(s) 1069
BsaBI GATNNNNATC 1 cut(s) 865
BsaHI GRCGYC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 1828
BsaJI CCNNGG 6 cut(s) 567, 982, 1492, 1818, 2454, 2894
BsaWI WCCGGW 1 cut(s) 1436
Bsc4I CCNNNNNNNGG 7 cut(s) 281, 300, 569, 638, 1238, 1255, 1930
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 2 cut(s) 94, 2119
Bse8I GATNNNNATC 1 cut(s) 865
BseBI CCWGG 4 cut(s) 195, 633, 1055, 2670
BseDI CCNNGG 6 cut(s) 567, 982, 1492, 1818, 2454, 2894
BseGI GGATG 5 cut(s) 555, 611, 1711, 1835, 2563
BseJI GATNNNNATC 1 cut(s) 865
BseLI CCNNNNNNNGG 7 cut(s) 281, 300, 569, 638, 1238, 1255, 1930
BseMI GCAATG 2 cut(s) 94, 2119
BseMII CTCAG 7 cut(s) 313, 394, 400, 434, 740, 899, 1460
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 2 cut(s) 1885, 2252
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 6 cut(s) 820, 897, 1519, 1756, 2232, 2500
BshFI GGCC 6 cut(s) 193, 642, 768, 1317, 2663, 2983
BshNI GGYRCC 1 cut(s) 1660
BsiHKAI GWGCWC 1 cut(s) 2580
BsiSI CCGG 3 cut(s) 477, 1437, 1965
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 7 cut(s) 281, 300, 569, 638, 1238, 1255, 1930
BsmAI GTCTC 5 cut(s) 383, 389, 1600, 1828, 2714
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 2114
BsnI GGCC 6 cut(s) 193, 642, 768, 1317, 2663, 2983
Bso31I GGTCTC 1 cut(s) 1828
Bsp119I TTCGAA 1 cut(s) 1681
Bsp1286I GDGCHC 3 cut(s) 753, 2580, 2831
Bsp143I GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
BspACI CCGC 3 cut(s) 344, 629, 777
BspANI GGCC 6 cut(s) 193, 642, 768, 1317, 2663, 2983
BspCNI CTCAG 7 cut(s) 312, 393, 399, 435, 739, 900, 1461
BspHI TCATGA 1 cut(s) 2332
BspLI GGNNCC 7 cut(s) 265, 553, 1154, 1499, 1662, 2141, 2500
BspMAI CTGCAG 1 cut(s) 1849
BspMI ACCTGC 1 cut(s) 2737
BspPI GGATC 6 cut(s) 134, 1147, 1160, 1615, 1999, 2687
BspT104I TTCGAA 1 cut(s) 1681
BspT107I GGYRCC 1 cut(s) 1660
BspTI CTTAAG 1 cut(s) 2861
BspTNI GGTCTC 1 cut(s) 1828
BsrDI GCAATG 2 cut(s) 94, 2119
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 6 cut(s) 567, 982, 1492, 1818, 2454, 2894
BssMI GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
BssNAI GTATAC 1 cut(s) 2014
BssNI GRCGYC 1 cut(s) 376
BssSI CACGAG 1 cut(s) 2412
BssT1I CCWWGG 5 cut(s) 567, 982, 1492, 1818, 2894
Bst1107I GTATAC 1 cut(s) 2014
Bst2BI CACGAG 1 cut(s) 2412
Bst2UI CCWGG 4 cut(s) 195, 633, 1055, 2670
Bst4CI ACNGT 4 cut(s) 70, 1037, 2363, 2485
Bst6I CTCTTC 4 cut(s) 2668, 2706, 2712, 2910
BstACI GRCGYC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 2861
BstAPI GCANNNNNTGC 1 cut(s) 1111
BstBI TTCGAA 1 cut(s) 1681
BstC8I GCNNGC 2 cut(s) 1756, 2878
BstDSI CCRYGG 1 cut(s) 2454
BstENI CCTNNNNNAGG 3 cut(s) 298, 636, 1928
BstF5I GGATG 5 cut(s) 555, 611, 1711, 1835, 2563
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 9 cut(s) 100, 142, 498, 1155, 1561, 1623, 1994, 2154, 2695
BstMAI GTCTC 5 cut(s) 383, 389, 1600, 1828, 2714
BstMBI GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
BstMWI GCNNNNNNNGC 6 cut(s) 477, 736, 1111, 1470, 2584, 2826
BstNI CCWGG 4 cut(s) 195, 633, 1055, 2670
BstNSI RCATGY 5 cut(s) 400, 652, 1758, 2163, 2880
BstSCI CCNGG 4 cut(s) 193, 631, 1053, 2668
BstSFI CTRYAG 4 cut(s) 945, 1601, 1845, 2610
BstSLI GKGCMC 1 cut(s) 753
BstV1I GCAGC 6 cut(s) 820, 897, 1519, 1756, 2232, 2500
BstV2I GAAGAC 2 cut(s) 1538, 2611
BstX2I RGATCY 4 cut(s) 1152, 1558, 2151, 2692
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 4 cut(s) 1152, 1558, 2151, 2692
BstZ17I GTATAC 1 cut(s) 2014
BsuRI GGCC 6 cut(s) 193, 642, 768, 1317, 2663, 2983
BtgI CCRYGG 1 cut(s) 2454
BtsCI GGATG 5 cut(s) 555, 611, 1711, 1835, 2563
BtsIMutI CAGTG 2 cut(s) 588, 2359
BveI ACCTGC 1 cut(s) 2737
Cac8I GCNNGC 2 cut(s) 1756, 2878
CciI TCATGA 1 cut(s) 2332
CfoI GCGC 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 2062, 2920
CseI GACGC 1 cut(s) 1954
Csp6I GTAC 5 cut(s) 238, 390, 1368, 1661, 1769
CspCI CAANNNNNGTGG 6 cut(s) 549, 584, 1705, 1740, 1766, 1801
CviQI GTAC 5 cut(s) 238, 390, 1368, 1661, 1769
DpnI GATC 9 cut(s) 99, 141, 497, 1154, 1560, 1622, 1993, 2153, 2694
DpnII GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
DraI TTTAAA 2 cut(s) 1128, 2626
DrdI GACNNNNNNGTC 1 cut(s) 381
DseDI GACNNNNNNGTC 1 cut(s) 381
EaeI YGGCCR 2 cut(s) 766, 2661
Eam1104I CTCTTC 4 cut(s) 2668, 2706, 2712, 2910
EarI CTCTTC 4 cut(s) 2668, 2706, 2712, 2910
EciI GGCGGA 1 cut(s) 618
Eco130I CCWWGG 5 cut(s) 567, 982, 1492, 1818, 2894
Eco147I AGGCCT 2 cut(s) 642, 1317
Eco24I GRGCYC 1 cut(s) 2831
Eco31I GGTCTC 1 cut(s) 1828
Eco32I GATATC 1 cut(s) 1417
Eco47I GGWCC 2 cut(s) 2062, 2920
Eco57I CTGAAG 4 cut(s) 292, 474, 1415, 1532
EcoNI CCTNNNNNAGG 3 cut(s) 298, 636, 1928
EcoO109I RGGNCCY 1 cut(s) 2062
EcoRI GAATTC 3 cut(s) 411, 686, 1443
EcoRII CCWGG 4 cut(s) 193, 631, 1053, 2668
EcoRV GATATC 1 cut(s) 1417
EcoT14I CCWWGG 5 cut(s) 567, 982, 1492, 1818, 2894
EcoT22I ATGCAT 1 cut(s) 2685
EcoT38I GRGCYC 1 cut(s) 2831
ErhI CCWWGG 5 cut(s) 567, 982, 1492, 1818, 2894
Esp3I CGTCTC 1 cut(s) 383
FalI AAGNNNNNCTT 2 cut(s) 2010, 2042
FaqI GGGAC 1 cut(s) 317
FauI CCCGC 1 cut(s) 784
FblI GTMKAC 1 cut(s) 2013
Fnu4HI GCNGC 6 cut(s) 809, 886, 1533, 1745, 2246, 2514
FokI GGATG 5 cut(s) 542, 618, 1718, 1842, 2570
FriOI GRGCYC 1 cut(s) 2831
Fsp4HI GCNGC 6 cut(s) 809, 886, 1533, 1745, 2246, 2514
FspBI CTAG 6 cut(s) 530, 833, 1556, 1649, 2169, 2204
FspI TGCGCA 1 cut(s) 436
GlaI GCGC 1 cut(s) 436
GluI GCNGC 6 cut(s) 809, 886, 1533, 1745, 2246, 2514
GsuI CTGGAG 5 cut(s) 644, 788, 914, 1277, 2502
HaeIII GGCC 6 cut(s) 193, 642, 768, 1317, 2663, 2983
HapII CCGG 3 cut(s) 477, 1437, 1965
HgaI GACGC 1 cut(s) 1954
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 376
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HindIII AAGCTT 2 cut(s) 512, 1283
HpaII CCGG 3 cut(s) 477, 1437, 1965
HphI GGTGA 6 cut(s) 264, 1168, 1273, 1667, 2432, 2883
Hpy166II GTNNAC 8 cut(s) 876, 1071, 1809, 2014, 2345, 2595, 2752, 2923
Hpy8I GTNNAC 8 cut(s) 876, 1071, 1809, 2014, 2345, 2595, 2752, 2923
Hpy99I CGWCG 1 cut(s) 378
HpyCH4III ACNGT 4 cut(s) 70, 1037, 2363, 2485
HpyCH4IV ACGT 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 6 cut(s) 477, 736, 1111, 1470, 2584, 2826
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 376
HspAI GCGC 1 cut(s) 435
KpnI GGTACC 1 cut(s) 1664
Kzo9I GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
LmnI GCTCC 2 cut(s) 551, 2521
Lsp1109I GCAGC 6 cut(s) 820, 897, 1519, 1756, 2232, 2500
LweI GCATC 4 cut(s) 529, 1820, 2670, 2938
MaeI CTAG 6 cut(s) 530, 833, 1556, 1649, 2169, 2204
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 4 cut(s) 226, 1241, 2567, 2765
MalI GATC 9 cut(s) 99, 141, 497, 1154, 1560, 1622, 1993, 2153, 2694
MboI GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
MfeI CAATTG 2 cut(s) 1181, 2588
MflI RGATCY 4 cut(s) 1152, 1558, 2151, 2692
MhlI GDGCHC 3 cut(s) 753, 2580, 2831
MlsI TGGCCA 2 cut(s) 768, 2663
MluNI TGGCCA 2 cut(s) 768, 2663
MlyI GAGTC 3 cut(s) 164, 2433, 2453
MmeI TCCRAC 4 cut(s) 381, 391, 2467, 2879
Mox20I TGGCCA 2 cut(s) 768, 2663
Mph1103I ATGCAT 1 cut(s) 2685
MroXI GAANNNNTTC 1 cut(s) 841
MscI TGGCCA 2 cut(s) 768, 2663
MslI CAYNNNNRTG 1 cut(s) 2364
Msp20I TGGCCA 2 cut(s) 768, 2663
MspCI CTTAAG 1 cut(s) 2861
MspI CCGG 3 cut(s) 477, 1437, 1965
MspR9I CCNGG 4 cut(s) 195, 633, 1055, 2670
MunI CAATTG 2 cut(s) 1181, 2588
Mva1269I GAATGC 1 cut(s) 2114
MvaI CCWGG 4 cut(s) 195, 633, 1055, 2670
MwoI GCNNNNNNNGC 6 cut(s) 477, 736, 1111, 1470, 2584, 2826
NdeII GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
NlaIV GGNNCC 7 cut(s) 265, 553, 1154, 1499, 1662, 2141, 2500
NmeAIII GCCGAG 1 cut(s) 2400
NsbI TGCGCA 1 cut(s) 436
NsiI ATGCAT 1 cut(s) 2685
NspI RCATGY 5 cut(s) 400, 652, 1758, 2163, 2880
NspV TTCGAA 1 cut(s) 1681
PaeI GCATGC 2 cut(s) 1758, 2880
PagI TCATGA 1 cut(s) 2332
PaqCI CACCTGC 1 cut(s) 2737
PceI AGGCCT 2 cut(s) 642, 1317
PciI ACATGT 2 cut(s) 396, 2159
PctI GAATGC 1 cut(s) 2114
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 7 cut(s) 340, 574, 1009, 1512, 1968, 2023, 2888
PflMI CCANNNNNTGG 3 cut(s) 281, 1238, 1255
PkrI GCNGC 6 cut(s) 810, 887, 1534, 1746, 2247, 2515
PleI GAGTC 3 cut(s) 164, 2433, 2453
PpsI GAGTC 3 cut(s) 164, 2433, 2453
PpuMI RGGWCCY 1 cut(s) 2062
PscI ACATGT 2 cut(s) 396, 2159
PshBI ATTAAT 2 cut(s) 1898, 2382
PsiI TTATAA 1 cut(s) 915
Psp5II RGGWCCY 1 cut(s) 2062
Psp6I CCWGG 4 cut(s) 193, 631, 1053, 2668
PspGI CCWGG 4 cut(s) 193, 631, 1053, 2668
PspN4I GGNNCC 7 cut(s) 265, 553, 1154, 1499, 1662, 2141, 2500
PspPI GGNCC 2 cut(s) 2062, 2920
PspPPI RGGWCCY 1 cut(s) 2062
PstI CTGCAG 1 cut(s) 1849
PsuI RGATCY 4 cut(s) 1152, 1558, 2151, 2692
RsaI GTAC 5 cut(s) 239, 391, 1369, 1662, 1770
RsaNI GTAC 5 cut(s) 238, 390, 1368, 1661, 1769
RseI CAYNNNNRTG 1 cut(s) 2364
SatI GCNGC 6 cut(s) 809, 886, 1533, 1745, 2246, 2514
Sau3AI GATC 9 cut(s) 97, 139, 495, 1152, 1558, 1620, 1991, 2151, 2692
Sau96I GGNCC 2 cut(s) 2062, 2920
SchI GAGTC 3 cut(s) 164, 2433, 2453
ScrFI CCNGG 4 cut(s) 195, 633, 1055, 2670
SduI GDGCHC 3 cut(s) 753, 2580, 2831
SfaNI GCATC 4 cut(s) 529, 1820, 2670, 2938
SfcI CTRYAG 4 cut(s) 945, 1601, 1845, 2610
SfuI TTCGAA 1 cut(s) 1681
SinI GGWCC 2 cut(s) 2062, 2920
SmiMI CAYNNNNRTG 1 cut(s) 2364
SmlI CTYRAG 2 cut(s) 1048, 2861
SmoI CTYRAG 2 cut(s) 1048, 2861
SphI GCATGC 2 cut(s) 1758, 2880
SseBI AGGCCT 2 cut(s) 642, 1317
SsiI CCGC 3 cut(s) 344, 629, 777
SspI AATATT 3 cut(s) 457, 1237, 2296
SspMI CTAG 6 cut(s) 530, 833, 1556, 1649, 2169, 2204
StuI AGGCCT 2 cut(s) 642, 1317
StyD4I CCNGG 4 cut(s) 193, 631, 1053, 2668
StyI CCWWGG 5 cut(s) 567, 982, 1492, 1818, 2894
TaaI ACNGT 4 cut(s) 70, 1037, 2363, 2485
TaiI ACGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 1681, 2781
TfiI GAWTC 7 cut(s) 340, 574, 1009, 1512, 1968, 2023, 2888
TscAI CASTG 2 cut(s) 595, 2366
TseI GCWGC 6 cut(s) 808, 885, 1532, 1744, 2245, 2513
TspGWI ACGGA 4 cut(s) 163, 276, 1165, 2471
TspRI CASTG 2 cut(s) 595, 2366
Van91I CCANNNNNTGG 3 cut(s) 281, 1238, 1255
Vha464I CTTAAG 1 cut(s) 2861
VpaK11BI GGWCC 2 cut(s) 2062, 2920
VspI ATTAAT 2 cut(s) 1898, 2382
XagI CCTNNNNNAGG 3 cut(s) 298, 636, 1928
XapI RAATTY 9 cut(s) 116, 411, 483, 686, 790, 1129, 1443, 1478, 2812
XbaI TCTAGA 3 cut(s) 529, 1555, 1648
XceI RCATGY 5 cut(s) 400, 652, 1758, 2163, 2880
XmiI GTMKAC 1 cut(s) 2013
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 6 cut(s) 530, 833, 1556, 1649, 2169, 2204
ZraI GACGTC 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 2685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.