Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470871.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

686 .. 1804

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470871.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgtcaaatggaagtttagaggagtggctgcacagagaaaaccaatcggggagtctgaaccttctccagagattgaatattgcttttgatgtggcttctgcattgtgttatcttcatgaccattgcgaaccacaaattattcaccttgacatgaagccgagcaacgttcttcttgacgatgacatggttgctcatattggtgattttggattggcaagactcatcccacccaccacgcgtgcgcactcctctgaaaatcaaagtagcacagttgggataaagggaaccattggctatgctgctccagagtatgcaattggtgttgagccatcaatacaaggggatgtatacagttacgggatccttgtgttgcaattattcacgggaagaagacccactgatgaaatgtttgtaggcggttgcaatatccatacttttgttaagacggccatacaaggaagacttatgcaaattgtggatcctactcttattgccactcttgaagagactactgaaacttcaacagcaaacaatgaagtgaccaacatccgtggttacaacaatgaaatcgaagctgatgaaggcaacattgacaatgggaatttaagtacgatgaacagttacgtgtggaagtgcatatttccaacccttaagattggacttgcatgctcggaagaatcaccaaggaataggatgtctatggaggaggtccacagggaactacaccatataaaaaatgcttacactcgtgttgacgtccgtcgagagaggccaagaagaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

5.36

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	759
Acc16I	TGCGCA	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	238
AciI	CCGC	1 cut(s)	417
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	4 cut(s)	355, 368, 473, 486
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	1 cut(s)	610
AflII	CTTAAG	1 cut(s)	650
AflIII	ACRYGT	2 cut(s)	236, 624
AgsI	TTSAA	3 cut(s)	76, 503, 522
AluBI	AGCT	2 cut(s)	575, 783
AluI	AGCT	2 cut(s)	575, 783
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	4 cut(s)	355, 368, 473, 486
AoxI	GGCC	2 cut(s)	447, 770
ApeKI	GCWGC	2 cut(s)	28, 299
ApoI	RAATTY	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	709
AsuHPI	GGTGA	3 cut(s)	134, 212, 672
AvaII	GGWCC	1 cut(s)	709
BamHI	GGATCC	2 cut(s)	360, 478
BauI	CACGAG	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	397, 466
BbvI	GCAGC	2 cut(s)	15, 286
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	500
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	2 cut(s)	29, 300
BlsI	GCNGC	2 cut(s)	30, 301
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	3 cut(s)	286, 362, 480
BoxI	GACNNNNGTC	1 cut(s)	759
BpiI	GAAGAC	2 cut(s)	397, 466
BpmI	CTGGAG	2 cut(s)	50, 288
BsaAI	YACGTR	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	2 cut(s)	550, 683
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	550, 683
BseGI	GGATG	4 cut(s)	222, 349, 546, 699
BseMI	GCAATG	1 cut(s)	121
BseRI	GAGGAG	3 cut(s)	35, 238, 719
BseXI	GCAGC	2 cut(s)	15, 286
BsgI	GTGCAG	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	449, 772
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	449, 772
Bsp143I	GATC	2 cut(s)	360, 478
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	449, 772
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	286, 362, 480
BspPI	GGATC	4 cut(s)	355, 368, 473, 486
BspTI	CTTAAG	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	550, 683
BssMI	GATC	2 cut(s)	360, 478
BssNAI	GTATAC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	756
BssSI	CACGAG	1 cut(s)	747
BssT1I	CCWWGG	1 cut(s)	683
Bst1107I	GTATAC	1 cut(s)	349
Bst2BI	CACGAG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	271, 353, 620
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	756
BstAFI	CTTAAG	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	2 cut(s)	240, 667
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	4 cut(s)	222, 349, 546, 699
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	363, 481
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	360, 478
BstNSI	RCATGY	1 cut(s)	669
BstPAI	GACNNNNGTC	1 cut(s)	759
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	15, 286
BstV2I	GAAGAC	2 cut(s)	397, 466
BstX2I	RGATCY	2 cut(s)	360, 478
BstYI	RGATCY	2 cut(s)	360, 478
BstZ17I	GTATAC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	449, 772
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	4 cut(s)	222, 349, 546, 699
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	240, 667
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	609
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	4 cut(s)	116, 151, 184, 666
CviJI	RGCY	9 cut(s)	28, 95, 157, 294, 328, 449, 575, 772, 783
CviKI_1	RGCY	9 cut(s)	28, 95, 157, 294, 328, 449, 575, 772, 783
CviQI	GTAC	1 cut(s)	609
DpnI	GATC	2 cut(s)	362, 480
DpnII	GATC	2 cut(s)	360, 478
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	4 cut(s)	119, 154, 187, 669
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	4 cut(s)	115, 150, 183, 665
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	29, 300
FokI	GGATG	4 cut(s)	209, 356, 533, 706
Fsp4HI	GCNGC	2 cut(s)	29, 300
FspAI	RTGCGCAY	1 cut(s)	243
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	29, 300
GsuI	CTGGAG	2 cut(s)	50, 288
HaeIII	GGCC	2 cut(s)	449, 772
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	4 cut(s)	119, 154, 187, 669
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	3 cut(s)	52, 219, 677
HphI	GGTGA	3 cut(s)	134, 212, 672
Hpy166II	GTNNAC	3 cut(s)	349, 712, 754
Hpy188I	TCNGA	3 cut(s)	57, 253, 673
Hpy188III	TCNNGA	6 cut(s)	67, 116, 173, 305, 500, 764
Hpy8I	GTNNAC	3 cut(s)	349, 712, 754
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	2 cut(s)	71, 575
HpyCH4III	ACNGT	3 cut(s)	271, 353, 620
HpyCH4IV	ACGT	3 cut(s)	165, 624, 756
HpyCH4V	TGCA	8 cut(s)	31, 101, 314, 373, 423, 469, 636, 665
HpySE526I	ACGT	3 cut(s)	165, 624, 756
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	4 cut(s)	119, 154, 187, 669
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	360, 478
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	3 cut(s)	80, 318, 700
Lsp1109I	GCAGC	2 cut(s)	15, 286
MaeII	ACGT	3 cut(s)	165, 624, 756
MaeIII	GTNAC	4 cut(s)	353, 538, 554, 620
MalI	GATC	2 cut(s)	362, 480
MboI	GATC	2 cut(s)	360, 478
MboII	GAAGA	7 cut(s)	104, 161, 399, 402, 471, 515, 686
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	360, 478
MluCI	AATT	5 cut(s)	135, 315, 374, 471, 601
MluI	ACGCGT	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	61, 213
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	5 cut(s)	13, 259, 697, 700, 762
MseI	TTAA	3 cut(s)	441, 605, 651
MslI	CAYNNNNRTG	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	650
MunI	CAATTG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	238
NdeII	GATC	2 cut(s)	360, 478
NlaIII	CATG	4 cut(s)	119, 154, 187, 669
NlaIV	GGNNCC	3 cut(s)	286, 362, 480
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	538
NsbI	TGCGCA	1 cut(s)	243
NspI	RCATGY	1 cut(s)	669
PaeI	GCATGC	1 cut(s)	669
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	30, 301
PleI	GAGTC	2 cut(s)	60, 213
PpsI	GAGTC	2 cut(s)	60, 213
Ppu21I	YACGTR	1 cut(s)	625
PshAI	GACNNNNGTC	1 cut(s)	759
Psp1406I	AACGTT	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	286, 362, 480
PspPI	GGNCC	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	360, 478
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	441, 605, 651
SatI	GCNGC	2 cut(s)	29, 300
Sau3AI	GATC	2 cut(s)	360, 478
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	2 cut(s)	61, 213
SetI	ASST	8 cut(s)	63, 147, 168, 577, 627, 711, 759, 785
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SphI	GCATGC	1 cut(s)	669
Sse9I	AATT	5 cut(s)	135, 315, 374, 471, 601
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	3 cut(s)	271, 353, 620
TaiI	ACGT	3 cut(s)	168, 627, 759
TaqI	TCGA	2 cut(s)	570, 763
TasI	AATT	5 cut(s)	135, 315, 374, 471, 601
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	3 cut(s)	441, 605, 651
Tru9I	TTAA	3 cut(s)	441, 605, 651
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	28, 299
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	7 cut(s)	104, 167, 417, 549, 579, 594, 629
TspGWI	ACGGA	2 cut(s)	539, 749
TspRI	CASTG	1 cut(s)	403
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.