Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000756.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

40571 .. 41665

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000756.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggttgatctgagttctaacaattttggaggtgttttaccaaactctgtagccaatttctcaacccaactgactgaactctaccttgggaagaatcaaatagtgggaacgattcctgaaacattaggaaatctgaacaatttaatactcttgaccctggaagtaaacttgttcacaggtatcattccagcttcttttgggaagttacaaaagctgcaaatattatatttatattccaataaattatcaagccagatcccatcttccttaggaaacctcacccaattgtctcagctcaatatatttgaaaatgaattagaaggaagcattcctccaaatattggtaattgcaaaaatctgcaggaaatggatatatcagacaataagcttagtggagatataccatcacaggtcattggtctgtactcccctgtcttcctcaacttatcgcaaaactcgctaactggcattctgcctatggaagtgggtaagctgcagaatatcaatacactggacatctctgataataatttgaccggaggagttctagaaaaaattggaggctgtctgagccttgaatttctttacctacaagggaaccactttcaaggaatcataccttcttctttggctgctttgagaggtcttcattatctagatctctcacgaaacaacttgtcaggacgtattccaaaagacctacagaggcttccattcttgatccatttgaacctttcgttcaataatctggagggtgaggtaccgaaagaaagagtttttcgaaacacaagtgcaatatcattggatggaaataccaaactttgtggaggtgtttcagaattgcagctaccagcatgccccagcaaagtaccaaagcagagaaggttgcatggttccaaactaaagttcacaatttccttggtcgctggatgttctcttctgtttgcagtcgtcttagctccttatttgaggagaaaactcacaagaataaaccgctatctgcagtgtcatcaatcgaataccttccaaaggtttcataccagacacttcatcaagctactgacggattctctccgagcaatcaaattggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

364

Amino Acids

40.17

Weight (kDa)

9.27

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	760
AccB7I	CCANNNNNTGG	1 cut(s)	341
AciI	CCGC	1 cut(s)	994
AclWI	GGATC	2 cut(s)	250, 715
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	3 cut(s)	425, 762, 870
AfiI	CCNNNNNNNGG	2 cut(s)	341, 1029
AgsI	TTSAA	5 cut(s)	308, 578, 608, 730, 742
AjnI	CCWGG	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 890, 922
AluBI	AGCT	8 cut(s)	191, 214, 295, 388, 493, 847, 959, 1057
AluI	AGCT	8 cut(s)	191, 214, 295, 388, 493, 847, 959, 1057
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	250, 715
ApeKI	GCWGC	4 cut(s)	214, 493, 632, 844
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	1022
Asp718I	GGTACC	1 cut(s)	760
AsuHPI	GGTGA	2 cut(s)	271, 767
AsuII	TTCGAA	1 cut(s)	781
AxyI	CCTNAGG	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	760
BbsI	GAAGAC	2 cut(s)	427, 638
BbvI	GCAGC	4 cut(s)	201, 480, 619, 856
BccI	CCATC	3 cut(s)	268, 412, 800
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	548, 656
BfmI	CTRYAG	5 cut(s)	48, 359, 494, 701, 1001
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	4 cut(s)	215, 494, 633, 845
BlsI	GCNGC	4 cut(s)	216, 495, 634, 846
Bme1390I	CCNGG	1 cut(s)	158
BmiI	GGNNCC	3 cut(s)	599, 762, 895
BmrFI	CCNGG	1 cut(s)	158
BpiI	GAAGAC	2 cut(s)	427, 638
BpmI	CTGGAG	1 cut(s)	770
Bpu14I	TTCGAA	1 cut(s)	781
BsaJI	CCNNGG	3 cut(s)	85, 156, 918
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 1029
Bse1I	ACTGG	2 cut(s)	469, 516
Bse21I	CCTNAGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	3 cut(s)	85, 156, 918
BseGI	GGATG	2 cut(s)	811, 935
BseLI	CCNNNNNNNGG	2 cut(s)	341, 1029
BseMII	CTCAG	2 cut(s)	305, 560
BseNI	ACTGG	2 cut(s)	469, 516
BseRI	GAGGAG	2 cut(s)	555, 985
BseXI	GCAGC	4 cut(s)	201, 480, 619, 856
BseYI	CCCAGC	1 cut(s)	860
BshNI	GGYRCC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	341, 1029
BsmAI	GTCTC	1 cut(s)	294
BsmI	GAATGC	2 cut(s)	327, 468
Bsp119I	TTCGAA	1 cut(s)	781
Bsp143I	GATC	4 cut(s)	7, 255, 658, 720
BspACI	CCGC	1 cut(s)	994
BspCNI	CTCAG	2 cut(s)	304, 561
BspLI	GGNNCC	3 cut(s)	599, 762, 895
BspMAI	CTGCAG	3 cut(s)	363, 498, 1005
BspPI	GGATC	2 cut(s)	250, 715
BspT104I	TTCGAA	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	760
BsrI	ACTGG	2 cut(s)	469, 516
BssECI	CCNNGG	3 cut(s)	85, 156, 918
BssMI	GATC	4 cut(s)	7, 255, 658, 720
BssT1I	CCWWGG	2 cut(s)	85, 918
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	942
BstBI	TTCGAA	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	856
BstDEI	CTNAG	7 cut(s)	11, 268, 291, 389, 569, 955, 1092
BstENI	CCTNNNNNAGG	1 cut(s)	1027
BstF5I	GGATG	2 cut(s)	811, 935
BstKTI	GATC	4 cut(s)	10, 258, 661, 723
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	4 cut(s)	7, 255, 658, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 570
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	5 cut(s)	48, 359, 494, 701, 1001
BstV1I	GCAGC	4 cut(s)	201, 480, 619, 856
BstV2I	GAAGAC	2 cut(s)	427, 638
BstX2I	RGATCY	2 cut(s)	255, 658
BstYI	RGATCY	2 cut(s)	255, 658
Bsu36I	CCTNAGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	811, 935
BtsI	GCAGTG	1 cut(s)	1010
BtsIMutI	CAGTG	2 cut(s)	509, 1010
Cac8I	GCNNGC	1 cut(s)	856
Csp6I	GTAC	3 cut(s)	424, 761, 869
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviAII	CATG	2 cut(s)	855, 890
CviQI	GTAC	3 cut(s)	424, 761, 869
DdeI	CTNAG	7 cut(s)	11, 268, 291, 389, 569, 955, 1092
DpnI	GATC	4 cut(s)	9, 257, 660, 722
DpnII	GATC	4 cut(s)	7, 255, 658, 720
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
Eco130I	CCWWGG	2 cut(s)	85, 918
Eco81I	CCTNAGG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	1027
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	85, 918
ErhI	CCWWGG	2 cut(s)	85, 918
FaeI	CATG	2 cut(s)	858, 893
FatI	CATG	2 cut(s)	854, 889
Fnu4HI	GCNGC	4 cut(s)	215, 494, 633, 845
FokI	GGATG	2 cut(s)	818, 942
Fsp4HI	GCNGC	4 cut(s)	215, 494, 633, 845
FspBI	CTAG	2 cut(s)	548, 656
GluI	GCNGC	4 cut(s)	215, 494, 633, 845
GsaI	CCCAGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	770
HapII	CCGG	1 cut(s)	537
Hin1II	CATG	2 cut(s)	858, 893
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	94, 112, 612, 1067
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	2 cut(s)	271, 767
Hpy166II	GTNNAC	3 cut(s)	166, 174, 909
Hpy188I	TCNGA	7 cut(s)	12, 135, 379, 523, 570, 838, 1076
Hpy188III	TCNNGA	8 cut(s)	116, 151, 548, 656, 666, 681, 718, 749
Hpy8I	GTNNAC	3 cut(s)	166, 174, 909
HpyAV	CCTTC	4 cut(s)	314, 630, 876, 1033
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	9 cut(s)	217, 351, 361, 496, 794, 844, 889, 947, 1003
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 570
HpyF3I	CTNAG	7 cut(s)	11, 268, 291, 389, 569, 955, 1092
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	2 cut(s)	858, 893
KpnI	GGTACC	1 cut(s)	764
Kzo9I	GATC	4 cut(s)	7, 255, 658, 720
LmnI	GCTCC	1 cut(s)	964
Lsp1109I	GCAGC	4 cut(s)	201, 480, 619, 856
MaeI	CTAG	2 cut(s)	548, 656
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	4 cut(s)	9, 257, 660, 722
MboI	GATC	4 cut(s)	7, 255, 658, 720
MboII	GAAGA	6 cut(s)	103, 255, 427, 615, 638, 929
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	2 cut(s)	255, 658
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	537
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	2 cut(s)	327, 468
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	457, 570
NdeII	GATC	4 cut(s)	7, 255, 658, 720
NlaIII	CATG	2 cut(s)	858, 893
NlaIV	GGNNCC	3 cut(s)	599, 762, 895
NspI	RCATGY	1 cut(s)	858
NspV	TTCGAA	1 cut(s)	781
PaeI	GCATGC	1 cut(s)	858
PctI	GAATGC	2 cut(s)	327, 468
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	4 cut(s)	94, 112, 612, 1067
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	216, 495, 634, 846
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	599, 762, 895
PstI	CTGCAG	3 cut(s)	363, 498, 1005
PsuI	RGATCY	2 cut(s)	255, 658
RsaI	GTAC	3 cut(s)	425, 762, 870
RsaNI	GTAC	3 cut(s)	424, 761, 869
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	4 cut(s)	215, 494, 633, 845
Sau3AI	GATC	4 cut(s)	7, 255, 658, 720
ScrFI	CCNGG	1 cut(s)	158
SfcI	CTRYAG	5 cut(s)	48, 359, 494, 701, 1001
SfuI	TTCGAA	1 cut(s)	781
SphI	GCATGC	1 cut(s)	858
SsiI	CCGC	1 cut(s)	994
SspI	AATATT	2 cut(s)	222, 340
SspMI	CTAG	2 cut(s)	548, 656
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	85, 918
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	2 cut(s)	781, 1016
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	4 cut(s)	94, 112, 612, 1067
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	516, 1010
TseI	GCWGC	4 cut(s)	214, 493, 632, 844
TspDTI	ATGAA	4 cut(s)	327, 638, 1025, 1039
TspGWI	ACGGA	1 cut(s)	1079
TspRI	CASTG	2 cut(s)	516, 1010
Van91I	CCANNNNNTGG	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	1027
XapI	RAATTY	1 cut(s)	578
XbaI	TCTAGA	2 cut(s)	547, 655
XceI	RCATGY	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	2 cut(s)	548, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.