Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

59531524 .. 59532771

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCAAATGGAAGTTTAGAGGAGTGGCTGCACAGAGTAAATCAATCAAGGAGTAGTTTGAACCTTCTTCAAAGACTGAATATTGCGGTTGATGTGCCTTCTGCGTGTTATCTTCATGATCATTGTGAACCACAAGTTATTCACTGCGACATGAAGCCGAGCAATGTTCTTCTTGATAATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTAGCAAGACTCATCTCAATGACCACAGACTCCTCTCAAAATCAAAGTAGCACGCCATCAAGACAAGGGGATGCATATAGTTTTGGGGTGCTTGTGTTGCAAATGTTCACAAGAAGAAGTCCTATCGATGAAATATTTAAAGAGGGTTTGAACCTCCATAACTTTGTCAAGATGGCCATACCAGGAAGAGTGATGCAGATTGTAGATCCTAGTCTTCTTGCCACTTTAGAAGAGACAGCACCTGCAACATCTCAAAATATAGTGAACTACATTAGTAGTTACAATAATGAAATCGAAGCCGTTGAAGAAAACATTAACAATGAGAATTTAAGCAAGATGAACACTTATGTGTGGAAGTGCATACTTCCAACCCTTAAGATAAGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATATCTATAGAGGAGGTCCATAGGAAGCTACACCATATAAAAGATGCTTACACTGGTGTTGACATCTGTCAAGAAAGGCCAAGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

5.91

Isoelectric Point (pI)

70.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 111	1.3e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	24 - 127	1.3e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	535
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	61, 71, 361, 515
AjnI	CCWGG	1 cut(s)	391
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	2 cut(s)	655, 717
AluI	AGCT	2 cut(s)	655, 717
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	384, 704
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	2 cut(s)	212, 606
AvaII	GGWCC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	386
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	2 cut(s)	274, 376
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	643
BmgT120I	GGNCC	1 cut(s)	643
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	271, 393, 661
BoxI	GACNNNNGTC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	3 cut(s)	35, 232, 653
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	386, 706
BshVI	ATCGAT	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	386, 706
Bsp143I	GATC	2 cut(s)	118, 415
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	386, 706
BspDI	ATCGAT	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	410
BspTI	CTTAAG	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	2 cut(s)	118, 415
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	617
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	393
Bst6I	CTCTTC	2 cut(s)	391, 435
BstAFI	CTTAAG	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	263, 601
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	121, 418
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	118, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	603
BstPAI	GACNNNNGTC	1 cut(s)	693
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	386, 706
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 678
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	263, 601
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	643
ClaI	ATCGAT	1 cut(s)	336
CviAII	CATG	4 cut(s)	116, 151, 184, 600
CviJI	RGCY	7 cut(s)	28, 157, 386, 509, 655, 706, 717
CviKI_1	RGCY	7 cut(s)	28, 157, 386, 509, 655, 706, 717
DpnI	GATC	2 cut(s)	120, 417
DpnII	GATC	2 cut(s)	118, 415
DraI	TTTAAA	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	391, 435
EarI	CTCTTC	2 cut(s)	391, 435
Eco130I	CCWWGG	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	617
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	4 cut(s)	119, 154, 187, 603
FatI	CATG	4 cut(s)	115, 150, 183, 599
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	386, 706
Hin1II	CATG	4 cut(s)	119, 154, 187, 603
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	219, 239, 611
HphI	GGTGA	2 cut(s)	212, 606
Hpy166II	GTNNAC	4 cut(s)	128, 318, 475, 688
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	5 cut(s)	116, 173, 270, 379, 698
Hpy8I	GTNNAC	4 cut(s)	128, 318, 475, 688
HpyAV	CCTTC	2 cut(s)	74, 108
HpyCH4V	TGCA	7 cut(s)	31, 284, 310, 406, 455, 570, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	119, 154, 187, 603
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	118, 415
LpnPI	CCDG	4 cut(s)	378, 405, 465, 666
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	3 cut(s)	271, 393, 661
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	2 cut(s)	120, 417
MboI	GATC	2 cut(s)	118, 415
MboII	GAAGA	9 cut(s)	59, 104, 161, 336, 408, 416, 452, 527, 620
MflI	RGATCY	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	1 cut(s)	535
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	213, 233
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	6 cut(s)	13, 253, 346, 374, 631, 634
Mox20I	TGGCCA	1 cut(s)	386
Mph1103I	ATGCAT	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	4 cut(s)	348, 525, 539, 585
MslI	CAYNNNNRTG	2 cut(s)	227, 557
Msp20I	TGGCCA	1 cut(s)	386
MspCI	CTTAAG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	2 cut(s)	118, 415
NlaIII	CATG	4 cut(s)	119, 154, 187, 603
NmeAIII	GCCGAG	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	1 cut(s)	603
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	603
PagI	TCATGA	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	2 cut(s)	213, 233
PpsI	GAGTC	2 cut(s)	213, 233
PshAI	GACNNNNGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	227, 557
SaqAI	TTAA	4 cut(s)	348, 525, 539, 585
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	118, 415
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	2 cut(s)	213, 233
ScrFI	CCNGG	1 cut(s)	393
SetI	ASST	6 cut(s)	66, 366, 454, 645, 657, 719
SfaNI	GCATC	3 cut(s)	271, 393, 661
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	643
SmiMI	CAYNNNNRTG	2 cut(s)	227, 557
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SphI	GCATGC	1 cut(s)	603
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	86
SspI	AATATT	2 cut(s)	82, 345
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	617
TaqI	TCGA	2 cut(s)	336, 504
TasI	AATT	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	4 cut(s)	348, 525, 539, 585
Tru9I	TTAA	4 cut(s)	348, 525, 539, 585
TscAI	CASTG	2 cut(s)	149, 685
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	104, 167, 354, 513, 563
TspRI	CASTG	2 cut(s)	149, 685
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	1 cut(s)	535
XceI	RCATGY	1 cut(s)	603
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.