Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

59615650 .. 59615988

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG361300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCATACCAGGAAGAGTGATGCAGATTGTAGATCCTAGTCTTCTTGCCACTTTAGAAGAGACAGCACCTGCAACATCTCAAAATATAGTGAACTACATTAGTAGTTACAATAATGAAATCGAAGCCGTTGAAGAAAACATTAACAATGAGAATTTAAGCAAGATGAACACTTATGTGTGGAAGTGCATACTTCCAACCCTTAAGATAAGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATATCTATAGAGGAGGTCCATAGGAAGCTACACCATATAAAAGATGCTTACACTGGTGTTGACATCTGTCAAGAAAGGCCAAGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.82

Weight (kDa)

5.91

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	154
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	274, 336
AluI	AGCT	2 cut(s)	274, 336
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	3, 323
ApoI	RAATTY	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	262
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	12, 280
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	5, 325
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	5, 325
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	5, 325
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	10, 54
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	5, 325
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	5 cut(s)	5, 128, 274, 325, 336
CviKI_1	RGCY	5 cut(s)	5, 128, 274, 325, 336
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	10, 54
EarI	CTCTTC	2 cut(s)	10, 54
Eco130I	CCWWGG	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	1 cut(s)	222
FaiI	YATR	9 cut(s)	8, 89, 177, 191, 220, 254, 267, 282, 284
FatI	CATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	5, 325
Hin1II	CATG	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	2 cut(s)	94, 307
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	94, 307
HpyCH4V	TGCA	4 cut(s)	25, 74, 189, 218
Hsp92II	CATG	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	24, 84, 285
LweI	GCATC	2 cut(s)	12, 280
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	27, 35, 71, 146, 239
MflI	RGATCY	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	154
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	2 cut(s)	250, 253
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	144, 158, 204
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	222
NspI	RCATGY	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	144, 158, 204
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	4 cut(s)	73, 264, 276, 338
SfaNI	GCATC	2 cut(s)	12, 280
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	236
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	3 cut(s)	144, 158, 204
Tru9I	TTAA	3 cut(s)	144, 158, 204
TscAI	CASTG	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	132, 182
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.