Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

7688052 .. 7691993

Gene Structure 3942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGTCAAACCGTCTTACAGGCACAATTCCACCAGACCTCGGCTCGTTGGTGAAGCTTGTGTATCTAGTTCTTGAGCAAAACAATTTGACAGGAGGCATCCCACCTTCCTTGGGAAATCTTTCATCAATCGGTTTACTTGGCGTAGGAGATAACAATTTGGTGGGCTACGTTCCAGAGGACATTGGCCGATTGAGAAGCTTATCTTTTTTTAGCGTTGGCCCCAATAAACTCTCTGGTATGATACCTCGTTCCCTTTTTAACATAACATCTATGGAGCACTTCATACTTGTAGATAACAAGTTTAACGGCAGTATTCCACCCGCCATAGGCCTCAACATGCCTCATCTCCTAGAAATGTTCGTCGGCGGAAATGAACTCTTTGGGCAAATCCCATCTTCATTTGCCAATGCTTCTCTGCTTCAGAAACTTGATATTAGTGAAAATAATTTTGTAGGGCAAGTTCCCAAAAGTTTTGGAGATCTTCCAGATCTCCGGTATCTTGATGTAAGTGACAATAATCTAGGAAGTTTTTCTGCTAATGACTTGGATTTTATAACATCCTTGGCCAATTGCAGCCGACTGGAAATGCTTGATATGAGTTTCAACAATTTTAGAGGTGTTTTACCCAACTCTGTAGTCAACTTGTCAACTCAACTGGCTGAATTCTACTTTGGACGCAATCATATATCAGGAGTGATCCCTGAAACATTAGAAAATCTTAACAATTTAATAGCCTTGAGCCTGGATGATAACCTGTTCAGAGGCGCCATTCCTACCTCTATTGGCAAATTACAAAAGCTGCAAGGATTGGGTTTAAGAGATAATAGATTATCAGGATGGATCCCATCTTCCATAGGAAACCTCACTCAATTGTATTACCTCGACTTGTCAGGAAATGACTTGGAAGGAAACGTTCCTCCAAGTATTGGAAACTGCCAACATTTGCAGGAGATGTATACATCAGATAACAGGCTTAGTGGAGATATACCACCACAGGTGATTGGTCTTTCCTCCCTTGTCTCTCTCAGCTTATCACAAAACTCACTAACTGGCAGCCTCCCTGTGGAAGTGGGTCAGCTGAAGAATATTTTTGCCCTTCGCATCAGTAGAAATAATTTGACTGGAAAAATTCCAGAAATCATTGGTGGCTGTATGAGCCTTGAACTTCTTGACCTACAAGAGAATCTCTTTCAAGGTATGATACCTTCATCTTTGGCTTCTTTGAGAGGTCTTCGGGAGTTAGATCTTTCACGAAACAATTTGTCAGGGAGAATTCCAAAAAACTTACAGACACTTCCATACCTGCTATATTTAAACCTGTCTTTCAATAATCTGGAAGGTGAGGTACCAAAAGAAGGAGTGTTTCGAAACACAAGCGCCACATCCTTGGTTGGAAATAGCAAACTTTGTGGCAGTGATGTTCCTGAATTTCAGCTATCAGCATGCCCCATCAGAAAGAAGAGAAAATTCAAACTAAAGTTCACAATTTCGTTAGTGGCTGGATGCTCTCTTGTGTTTGCAGTCTTGGTTACTCTTTATTGGAGGAGAAAATTGAGAAAGAAACCATTAGCTGTAGACTCATCAATCAACTTCTTCCCGGAGGTTTCATATAAGACACTTCATCAAGCTACTGGTGGATTCTCTCGGAGCAGTCTAATTGGATCAGGGGGTTTTGGCTCTGTATACAAAGGGATTCTTGATCACGGAGAAAATAACGTACTTGCCATAAAGGTCATCAACCTTCAACAGAGAGGGGCTTCCAAGAGTTTCACGGCAGAATGCAATGCACTAAGAAATATCCGGCACCGAAATCTTGTCAAGATCTTAACTTGCTGCTCCAGCATGGATTACAATGGTACTGAATTCAAAGCTCTAATTTTTGAATATATGTCAAATGGAAGTTTAGAGGAGTGGCTGCACAGAGAAAACCAATCAATGAGTTTGACCCTTCTTCAAAGATTGAATATTGTTGTTGATGTGGCTTCTGCATTATGCTATCTTCATGACCATTGTGAACCTCCAATCATTCACTGCGACATGAAGCCAAGTAATGTTCTTCTTGACGATGACATGGTTGCTCATGTAGGTGATTTTGGCTTAGCCAGACTCATCCCAACCACCACAGAGTCCTCGCAAACTCAGAATAGCACTATTGGAATAAAGGGAACAATCGGCTATGCTGCTCCAGAGTACGCAAGTGGCGTAGAGGCATCAAGACAGGGAGATGTATATAGTTATGGGATTCTTGTATTGGAATTGTTCACAGGAAGAAGACCCACAGACGAAATGTTCAAAGACGGTTTGAAACTCCACGACTTTGTTAAGAAGGCATTACCAGGAAGGCTTGTGCAGATTGTGGACGCTGCTCTTCTCGCCACCCTAGAAGAGACAGCTCCTGCAGCAACTGTAGGAAATGAAGTGAACTACATGCTTACAGGTCATAACAATGAAATTGAAGCAGAAGAGGAAAATAGAGATTATGAGAACCTAAGCAGGGTGGACACACGTGTGTGGAAGTGTATACATTCAATATTTGAGATAGGACTGGCGTGCTCCGAGGAATCACGAGAGAATAGAATGTGTATGAAGGATGTCCTCAGGGACCTCCACCGTATACAAATTGCTTACAATGCTGTTGTGATCAATCGAGAGAAACCAAGAGGCAAAACAACAGATTATGGCATGGGAAGCGATACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

900

Amino Acids

98.96

Weight (kDa)

5.89

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	116 - 174	1.2e-07	Leucine rich repeat
LRR_8	PF13855	140 - 204	4e-07	Leucine rich repeat
LRR_14	PF23598	237 - 320	2.3e-08	Leucine-rich repeat region
LRR_8	PF13855	243 - 301	5.9e-06	Leucine rich repeat
LRR_14	PF23598	328 - 420	6.8e-06	Leucine-rich repeat region
LRR_8	PF13855	386 - 445	2e-08	Leucine rich repeat
Pkinase	PF00069	548 - 762	1.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	551 - 764	4.2e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	1311
Acc65I	GGTACC	1 cut(s)	1345
AccB1I	GGYRCC	3 cut(s)	764, 1345, 1803
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccI	GTMKAC	5 cut(s)	956, 1575, 1683, 2521, 2614
AciI	CCGC	2 cut(s)	321, 366
AclI	AACGTT	1 cut(s)	912
AclWI	GGATC	4 cut(s)	691, 835, 848, 1669
AcoI	YGGCCR	2 cut(s)	184, 564
AcsI	RAATTY	6 cut(s)	662, 1128, 1272, 1427, 1466, 1862
AcuI	CTGAAG	2 cut(s)	404, 1100
AcvI	CACGTG	1 cut(s)	2507
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	4 cut(s)	1347, 1719, 1858, 2192
AfiI	CCNNNNNNNGG	7 cut(s)	38, 110, 326, 926, 1063, 1355, 2494
AflIII	ACRYGT	2 cut(s)	2504, 2506
AjnI	CCWGG	2 cut(s)	741, 2335
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AleI	CACNNNNGTG	2 cut(s)	2507, 2509
Alw21I	GWGCWC	2 cut(s)	279, 2555
Alw26I	GTCTC	2 cut(s)	1024, 2381
AlwI	GGATC	4 cut(s)	691, 835, 848, 1669
AlwNI	CAGNNNCTG	2 cut(s)	2396, 2405
AoxI	GGCC	4 cut(s)	184, 217, 328, 564
ApeKI	GCWGC	8 cut(s)	573, 799, 1053, 1833, 1915, 2180, 2363, 2399
ApoI	RAATTY	6 cut(s)	662, 1128, 1272, 1427, 1466, 1862
Asp700I	GAANNNNTTC	2 cut(s)	118, 529
Asp718I	GGTACC	1 cut(s)	1345
AspLEI	GCGC	2 cut(s)	767, 1379
AspS9I	GGNCC	2 cut(s)	218, 2602
AsuC2I	CCSGG	1 cut(s)	1598
AsuHPI	GGTGA	4 cut(s)	61, 1009, 1352, 2099
AsuII	TTCGAA	1 cut(s)	1366
AvaII	GGWCC	1 cut(s)	2602
AxyI	CCTNAGG	1 cut(s)	2597
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	840
BanI	GGYRCC	3 cut(s)	764, 1345, 1803
BarI	GAAGNNNNNNTAC	4 cut(s)	1189, 1221, 1329, 1361
BauI	CACGAG	1 cut(s)	2565
BbrPI	CACGTG	1 cut(s)	2507
BbsI	GAAGAC	2 cut(s)	1223, 2278
Bbv12I	GWGCWC	2 cut(s)	279, 2555
BbvI	GCAGC	8 cut(s)	585, 786, 1065, 1820, 1902, 2167, 2350, 2411
BccI	CCATC	4 cut(s)	400, 831, 853, 1457
BceAI	ACGGC	2 cut(s)	322, 1788
BciT130I	CCWGG	2 cut(s)	743, 2337
BclI	TGATCA	2 cut(s)	1699, 2640
BcnI	CCSGG	1 cut(s)	1598
BcoDI	GTCTC	2 cut(s)	1024, 2381
BfaI	CTAG	4 cut(s)	65, 350, 521, 2381
BfmI	CTRYAG	4 cut(s)	633, 1572, 2397, 2406
BfoI	RGCGCY	2 cut(s)	768, 1380
BfuAI	ACCTGC	1 cut(s)	1311
BglII	AGATCT	4 cut(s)	478, 487, 1243, 1821
BisI	GCNGC	8 cut(s)	574, 800, 1054, 1834, 1916, 2181, 2364, 2400
BlpI	GCTNAGC	1 cut(s)	2098
BlsI	GCNGC	8 cut(s)	575, 801, 1055, 1835, 1917, 2182, 2365, 2401
Bme1390I	CCNGG	3 cut(s)	743, 1598, 2337
Bme18I	GGWCC	1 cut(s)	2602
BmgT120I	GGNCC	2 cut(s)	218, 2602
BmiI	GGNNCC	6 cut(s)	220, 766, 842, 1347, 1805, 2603
BmrFI	CCNGG	3 cut(s)	743, 1598, 2337
BmsI	GCATC	4 cut(s)	105, 1110, 1493, 2219
BpiI	GAAGAC	2 cut(s)	1223, 2278
BpmI	CTGGAG	2 cut(s)	1822, 2169
Bpu10I	CCTNAGC	1 cut(s)	2489
Bpu1102I	GCTNAGC	1 cut(s)	2098
Bpu14I	TTCGAA	1 cut(s)	1366
BpuEI	CTTGAG	2 cut(s)	92, 757
BpuMI	CCSGG	1 cut(s)	1598
BsaAI	YACGTR	1 cut(s)	2507
BsaHI	GRCGYC	1 cut(s)	765
BsaJI	CCNNGG	5 cut(s)	37, 108, 561, 1386, 2556
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	7 cut(s)	38, 110, 326, 926, 1063, 1355, 2494
Bse1I	ACTGG	6 cut(s)	585, 660, 1054, 1126, 1636, 2550
Bse21I	CCTNAGG	1 cut(s)	2597
Bse3DI	GCAATG	1 cut(s)	1789
BseBI	CCWGG	2 cut(s)	743, 2337
BseDI	CCNNGG	5 cut(s)	37, 108, 561, 1386, 2556
BseGI	GGATG	8 cut(s)	96, 557, 751, 842, 1382, 1508, 2109, 2596
BseLI	CCNNNNNNNGG	7 cut(s)	38, 110, 326, 926, 1063, 1355, 2494
BseMI	GCAATG	1 cut(s)	1789
BseMII	CTCAG	3 cut(s)	1039, 2153, 2611
BseNI	ACTGG	6 cut(s)	585, 660, 1054, 1126, 1636, 2550
BseRI	GAGGAG	2 cut(s)	1558, 1922
BseXI	GCAGC	8 cut(s)	585, 786, 1065, 1820, 1902, 2167, 2350, 2411
BsgI	GTGCAG	2 cut(s)	1901, 2369
BshFI	GGCC	4 cut(s)	186, 219, 330, 566
BshNI	GGYRCC	3 cut(s)	764, 1345, 1803
BsiHKAI	GWGCWC	2 cut(s)	279, 2555
BsiSI	CCGG	3 cut(s)	493, 1598, 1801
BslFI	GGGAC	1 cut(s)	2615
BslI	CCNNNNNNNGG	7 cut(s)	38, 110, 326, 926, 1063, 1355, 2494
BsmAI	GTCTC	2 cut(s)	1024, 2381
BsmFI	GGGAC	1 cut(s)	2615
BsmI	GAATGC	1 cut(s)	1784
BsnI	GGCC	4 cut(s)	186, 219, 330, 566
Bsp119I	TTCGAA	1 cut(s)	1366
Bsp1286I	GDGCHC	2 cut(s)	279, 2555
Bsp143I	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
Bsp1720I	GCTNAGC	1 cut(s)	2098
BspACI	CCGC	2 cut(s)	321, 366
BspANI	GGCC	4 cut(s)	186, 219, 330, 566
BspCNI	CTCAG	3 cut(s)	1038, 2152, 2610
BspHI	TCATGA	1 cut(s)	2002
BspLI	GGNNCC	6 cut(s)	220, 766, 842, 1347, 1805, 2603
BspMAI	CTGCAG	1 cut(s)	2401
BspMI	ACCTGC	1 cut(s)	1311
BspPI	GGATC	4 cut(s)	691, 835, 848, 1669
BspQI	GCTCTTC	1 cut(s)	2373
BspT104I	TTCGAA	1 cut(s)	1366
BspT107I	GGYRCC	3 cut(s)	764, 1345, 1803
BsrDI	GCAATG	1 cut(s)	1789
BsrI	ACTGG	6 cut(s)	585, 660, 1054, 1126, 1636, 2550
BssECI	CCNNGG	5 cut(s)	37, 108, 561, 1386, 2556
BssMI	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
BssNAI	GTATAC	4 cut(s)	957, 1684, 2522, 2615
BssNI	GRCGYC	1 cut(s)	765
BssSI	CACGAG	1 cut(s)	2565
BssT1I	CCWWGG	3 cut(s)	108, 561, 1386
Bst1107I	GTATAC	4 cut(s)	957, 1684, 2522, 2615
Bst2BI	CACGAG	1 cut(s)	2565
Bst2UI	CCWGG	2 cut(s)	743, 2337
Bst4CI	ACNGT	4 cut(s)	11, 2300, 2407, 2612
Bst6I	CTCTTC	4 cut(s)	1454, 2373, 2379, 2457
BstACI	GRCGYC	1 cut(s)	765
BstBAI	YACGTR	1 cut(s)	2507
BstBI	TTCGAA	1 cut(s)	1366
BstC8I	GCNNGC	2 cut(s)	1444, 2551
BstDEI	CTNAG	7 cut(s)	974, 1025, 1790, 2098, 2139, 2489, 2597
BstF5I	GGATG	8 cut(s)	96, 557, 751, 842, 1382, 1508, 2109, 2596
BstH2I	RGCGCY	2 cut(s)	768, 1380
BstHHI	GCGC	2 cut(s)	767, 1379
BstKTI	GATC	9 cut(s)	481, 490, 699, 843, 1246, 1664, 1702, 1824, 2643
BstMAI	GTCTC	2 cut(s)	1024, 2381
BstMBI	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
BstMWI	GCNNNNNNNGC	6 cut(s)	1155, 1839, 2372, 2399, 2630, 2688
BstNI	CCWGG	2 cut(s)	743, 2337
BstNSI	RCATGY	3 cut(s)	340, 1446, 2431
BstSCI	CCNGG	3 cut(s)	741, 1596, 2335
BstSFI	CTRYAG	4 cut(s)	633, 1572, 2397, 2406
BstV1I	GCAGC	8 cut(s)	585, 786, 1065, 1820, 1902, 2167, 2350, 2411
BstV2I	GAAGAC	2 cut(s)	1223, 2278
BstX2I	RGATCY	5 cut(s)	478, 487, 840, 1243, 1821
BstXI	CCANNNNNNTGG	1 cut(s)	1387
BstYI	RGATCY	5 cut(s)	478, 487, 840, 1243, 1821
BstZ17I	GTATAC	4 cut(s)	957, 1684, 2522, 2615
Bsu36I	CCTNAGG	1 cut(s)	2597
BsuRI	GGCC	4 cut(s)	186, 219, 330, 566
BtsCI	GGATG	8 cut(s)	96, 557, 751, 842, 1382, 1508, 2109, 2596
BtsI	GCAGTG	2 cut(s)	1420, 2029
BtsIMutI	CAGTG	2 cut(s)	1420, 2029
BveI	ACCTGC	1 cut(s)	1311
Cac8I	GCNNGC	2 cut(s)	1444, 2551
CaiI	CAGNNNCTG	2 cut(s)	2396, 2405
CciI	TCATGA	1 cut(s)	2002
CfoI	GCGC	2 cut(s)	767, 1379
Cfr13I	GGNCC	2 cut(s)	218, 2602
CseI	GACGC	2 cut(s)	684, 2369
Csp6I	GTAC	4 cut(s)	1346, 1718, 1857, 2191
CspCI	CAANNNNNGTGG	4 cut(s)	90, 125, 1390, 1425
CviAII	CATG	9 cut(s)	337, 1443, 1843, 2003, 2038, 2071, 2081, 2428, 2683
CviQI	GTAC	4 cut(s)	1346, 1718, 1857, 2191
DdeI	CTNAG	7 cut(s)	974, 1025, 1790, 2098, 2139, 2489, 2597
DinI	GGCGCC	1 cut(s)	766
DpnI	GATC	9 cut(s)	480, 489, 698, 842, 1245, 1663, 1701, 1823, 2642
DpnII	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
DraI	TTTAAA	1 cut(s)	1314
EaeI	YGGCCR	2 cut(s)	184, 564
Eam1104I	CTCTTC	4 cut(s)	1454, 2373, 2379, 2457
EarI	CTCTTC	4 cut(s)	1454, 2373, 2379, 2457
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	3 cut(s)	108, 561, 1386
Eco147I	AGGCCT	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	2602
Eco57I	CTGAAG	2 cut(s)	404, 1100
Eco72I	CACGTG	1 cut(s)	2507
Eco81I	CCTNAGG	1 cut(s)	2597
EcoO109I	RGGNCCY	1 cut(s)	2602
EcoRI	GAATTC	3 cut(s)	662, 1272, 1862
EcoRII	CCWGG	2 cut(s)	741, 2335
EcoT14I	CCWWGG	3 cut(s)	108, 561, 1386
EgeI	GGCGCC	1 cut(s)	766
EheI	GGCGCC	1 cut(s)	766
ErhI	CCWWGG	3 cut(s)	108, 561, 1386
FaeI	CATG	9 cut(s)	340, 1446, 1846, 2006, 2041, 2074, 2084, 2431, 2686
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 1680, 1712
FaqI	GGGAC	1 cut(s)	2615
FatI	CATG	9 cut(s)	336, 1442, 1842, 2002, 2037, 2070, 2080, 2427, 2682
FauI	CCCGC	1 cut(s)	328
FbaI	TGATCA	2 cut(s)	1699, 2640
FblI	GTMKAC	5 cut(s)	956, 1575, 1683, 2521, 2614
Fnu4HI	GCNGC	8 cut(s)	574, 800, 1054, 1834, 1916, 2181, 2364, 2400
FokI	GGATG	8 cut(s)	83, 544, 758, 849, 1369, 1515, 2096, 2603
Fsp4HI	GCNGC	8 cut(s)	574, 800, 1054, 1834, 1916, 2181, 2364, 2400
FspBI	CTAG	4 cut(s)	65, 350, 521, 2381
GlaI	GCGC	2 cut(s)	766, 1378
GluI	GCNGC	8 cut(s)	574, 800, 1054, 1834, 1916, 2181, 2364, 2400
GsuI	CTGGAG	2 cut(s)	1822, 2169
HaeII	RGCGCY	2 cut(s)	768, 1380
HaeIII	GGCC	4 cut(s)	186, 219, 330, 566
HapII	CCGG	3 cut(s)	493, 1598, 1801
HgaI	GACGC	2 cut(s)	684, 2369
HhaI	GCGC	2 cut(s)	767, 1379
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	9 cut(s)	340, 1446, 1846, 2006, 2041, 2074, 2084, 2431, 2686
Hin6I	GCGC	2 cut(s)	765, 1377
HinP1I	GCGC	2 cut(s)	765, 1377
HincII	GTYRAC	2 cut(s)	640, 648
HindII	GTYRAC	2 cut(s)	640, 648
HindIII	AAGCTT	2 cut(s)	53, 196
HinfI	GANTC	8 cut(s)	1183, 1577, 1638, 1693, 2106, 2126, 2242, 2561
HpaII	CCGG	3 cut(s)	493, 1598, 1801
HphI	GGTGA	4 cut(s)	61, 1009, 1352, 2099
Hpy188I	TCNGA	7 cut(s)	423, 761, 964, 1454, 1647, 2142, 2557
Hpy99I	CGWCG	1 cut(s)	365
HpyCH4III	ACNGT	4 cut(s)	11, 2300, 2407, 2612
HpyCH4IV	ACGT	4 cut(s)	168, 912, 1716, 2506
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1155, 1839, 2372, 2399, 2630, 2688
HpyF3I	CTNAG	7 cut(s)	974, 1025, 1790, 2098, 2139, 2489, 2597
HpySE526I	ACGT	4 cut(s)	168, 912, 1716, 2506
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	9 cut(s)	340, 1446, 1846, 2006, 2041, 2074, 2084, 2431, 2686
HspAI	GCGC	2 cut(s)	765, 1377
KasI	GGCGCC	1 cut(s)	764
KpnI	GGTACC	1 cut(s)	1349
Ksp22I	TGATCA	2 cut(s)	1699, 2640
Kzo9I	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
LguI	GCTCTTC	1 cut(s)	2373
LmnI	GCTCC	6 cut(s)	274, 1647, 1841, 2188, 2398, 2558
Lsp1109I	GCAGC	8 cut(s)	585, 786, 1065, 1820, 1902, 2167, 2350, 2411
LweI	GCATC	4 cut(s)	105, 1110, 1493, 2219
MaeI	CTAG	4 cut(s)	65, 350, 521, 2381
MaeII	ACGT	4 cut(s)	168, 912, 1716, 2506
MaeIII	GTNAC	2 cut(s)	509, 1528
MalI	GATC	9 cut(s)	480, 489, 698, 842, 1245, 1663, 1701, 1823, 2642
MboI	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
MfeI	CAATTG	2 cut(s)	568, 869
MflI	RGATCY	5 cut(s)	478, 487, 840, 1243, 1821
MhlI	GDGCHC	2 cut(s)	279, 2555
MlsI	TGGCCA	1 cut(s)	566
MluNI	TGGCCA	1 cut(s)	566
Mly113I	GGCGCC	1 cut(s)	765
MlyI	GAGTC	3 cut(s)	1571, 2100, 2135
MmeI	TCCRAC	1 cut(s)	1372
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	2 cut(s)	118, 529
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	9 cut(s)	258, 303, 720, 728, 815, 1313, 1826, 2322, 2701
MslI	CAYNNNNRTG	4 cut(s)	2085, 2445, 2507, 2509
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	1078
MspI	CCGG	3 cut(s)	493, 1598, 1801
MspR9I	CCNGG	3 cut(s)	743, 1598, 2337
MunI	CAATTG	2 cut(s)	568, 869
Mva1269I	GAATGC	1 cut(s)	1784
MvaI	CCWGG	2 cut(s)	743, 2337
MwoI	GCNNNNNNNGC	6 cut(s)	1155, 1839, 2372, 2399, 2630, 2688
NarI	GGCGCC	1 cut(s)	765
NciI	CCSGG	1 cut(s)	1598
NdeII	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
NlaIII	CATG	9 cut(s)	340, 1446, 1846, 2006, 2041, 2074, 2084, 2431, 2686
NlaIV	GGNNCC	6 cut(s)	220, 766, 842, 1347, 1805, 2603
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	3 cut(s)	340, 1446, 2431
NspV	TTCGAA	1 cut(s)	1366
OliI	CACNNNNGTG	2 cut(s)	2507, 2509
PaeI	GCATGC	1 cut(s)	1446
PagI	TCATGA	1 cut(s)	2002
PceI	AGGCCT	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	2373
PcsI	WCGNNNNNNNCGW	1 cut(s)	2199
PctI	GAATGC	1 cut(s)	1784
PdmI	GAANNNNTTC	2 cut(s)	118, 529
PfeI	GAWTC	5 cut(s)	1183, 1638, 1693, 2242, 2561
PflMI	CCANNNNNTGG	1 cut(s)	926
PfoI	TCCNGGA	1 cut(s)	1596
PkrI	GCNGC	8 cut(s)	575, 801, 1055, 1835, 1917, 2182, 2365, 2401
PleI	GAGTC	3 cut(s)	1571, 2100, 2134
PluTI	GGCGCC	1 cut(s)	768
PmaCI	CACGTG	1 cut(s)	2507
PmlI	CACGTG	1 cut(s)	2507
PpsI	GAGTC	3 cut(s)	1571, 2100, 2134
Ppu21I	YACGTR	1 cut(s)	2507
PpuMI	RGGWCCY	1 cut(s)	2602
PsiI	TTATAA	1 cut(s)	554
Psp1406I	AACGTT	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	2602
Psp6I	CCWGG	2 cut(s)	741, 2335
PspCI	CACGTG	1 cut(s)	2507
PspGI	CCWGG	2 cut(s)	741, 2335
PspN4I	GGNNCC	6 cut(s)	220, 766, 842, 1347, 1805, 2603
PspPI	GGNCC	2 cut(s)	218, 2602
PspPPI	RGGWCCY	1 cut(s)	2602
PsrI	GAACNNNNNNTAC	2 cut(s)	444, 476
PstI	CTGCAG	1 cut(s)	2401
PstNI	CAGNNNCTG	2 cut(s)	2396, 2405
PsuI	RGATCY	5 cut(s)	478, 487, 840, 1243, 1821
PvuII	CAGCTG	1 cut(s)	1078
RsaI	GTAC	4 cut(s)	1347, 1719, 1858, 2192
RsaNI	GTAC	4 cut(s)	1346, 1718, 1857, 2191
RseI	CAYNNNNRTG	4 cut(s)	2085, 2445, 2507, 2509
SapI	GCTCTTC	1 cut(s)	2373
SaqAI	TTAA	9 cut(s)	258, 303, 720, 728, 815, 1313, 1826, 2322, 2701
SatI	GCNGC	8 cut(s)	574, 800, 1054, 1834, 1916, 2181, 2364, 2400
Sau3AI	GATC	9 cut(s)	478, 487, 696, 840, 1243, 1661, 1699, 1821, 2640
Sau96I	GGNCC	2 cut(s)	218, 2602
SchI	GAGTC	3 cut(s)	1571, 2100, 2135
ScrFI	CCNGG	3 cut(s)	743, 1598, 2337
SduI	GDGCHC	2 cut(s)	279, 2555
SfaNI	GCATC	4 cut(s)	105, 1110, 1493, 2219
SfcI	CTRYAG	4 cut(s)	633, 1572, 2397, 2406
SfoI	GGCGCC	1 cut(s)	766
SfuI	TTCGAA	1 cut(s)	1366
SinI	GGWCC	1 cut(s)	2602
SmiMI	CAYNNNNRTG	4 cut(s)	2085, 2445, 2507, 2509
SmlI	CTYRAG	2 cut(s)	71, 736
SmoI	CTYRAG	2 cut(s)	71, 736
SphI	GCATGC	1 cut(s)	1446
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	321, 366
SspDI	GGCGCC	1 cut(s)	764
SspI	AATATT	3 cut(s)	1087, 1966, 2532
SspMI	CTAG	4 cut(s)	65, 350, 521, 2381
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	741, 1596, 2335
StyI	CCWWGG	3 cut(s)	108, 561, 1386
TaaI	ACNGT	4 cut(s)	11, 2300, 2407, 2612
TaiI	ACGT	4 cut(s)	171, 915, 1719, 2509
TaqI	TCGA	3 cut(s)	882, 1366, 2647
TfiI	GAWTC	5 cut(s)	1183, 1638, 1693, 2242, 2561
Tru1I	TTAA	9 cut(s)	258, 303, 720, 728, 815, 1313, 1826, 2322, 2701
Tru9I	TTAA	9 cut(s)	258, 303, 720, 728, 815, 1313, 1826, 2322, 2701
TscAI	CASTG	2 cut(s)	1420, 2036
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	8 cut(s)	573, 799, 1053, 1833, 1915, 2180, 2363, 2399
Tsp45I	GTSAC	1 cut(s)	509
TspGWI	ACGGA	1 cut(s)	1719
TspRI	CASTG	2 cut(s)	1420, 2036
Van91I	CCANNNNNTGG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	2602
XapI	RAATTY	6 cut(s)	662, 1128, 1272, 1427, 1466, 1862
XceI	RCATGY	3 cut(s)	340, 1446, 2431
XmiI	GTMKAC	5 cut(s)	956, 1575, 1683, 2521, 2614
XmnI	GAANNNNTTC	2 cut(s)	118, 529
XspI	CTAG	4 cut(s)	65, 350, 521, 2381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.