Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008140.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

62620 .. 66689

Gene Structure 4070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008140.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

atgttgatttttgccttgaataatattcccatcacctgccgactagcttccccttgcttatacaaacttaatggagagtttcacataccttcgtgtcatccttttcatcaactttttacaactcacactgttgtaagttcatttggcaatgaaaccgatcacttggctttgctaaaattcaaagattgcatagcctctgatccacatgggctgttgaactcagggaataactccgttcattactacaaatggcctggaattacttgtggcagacggcatcagagagtaacagccttgtacctaccacacgctgttttgcacggaaccatatcgccatacattggcaacctctcctttctcagggacttcagcctttacaacaacagcttctctggcaagattccgcaacaagttgaacatttattccggctccgacatctcaatctcactatcaacatgatagagggggaaattccagtcaacctgaccttctgtgcggaactgagcatcataagtattggaagaaaccgccttaccggaaaaattccttcagaggttggctcattgatgaagcttatgcatcttaattttgaggtagataatctgataggaggcatcccaccttccatgggaaatgtttcatcaatcactatactttccctggcagagaacaatttggtgggcagcgttccagaggtgctaggccgattgagaagcttatcattctttgtaattggtctcaataatctctctggtttgatccctccctccctttttaacaaatcatctatgaacgccttctcactttcatttaataaatttaagggcagtattccacgcctaaacatgcctaatctccaaatactgtacctagctggaaatgaattctttggacaaatcccagcttcactttccaatgcttctcagcttcaagcgcttgattttggagaaaataattttgttggccaacttcccgtatgttttggaaattttccaaatctccagaggctcagattaactaagaataatctaggaagtaattcatcaaatgatttgggatttataaaattcttgacaaattgcagcaatctggagactatttctttgagtgttaacaactttggaggtgttttacccgattctgtagccaatctctcaacccaactgactcaactctaccttgggggcaatcaaatagcgcgaacaattcctgaaacattaggaaatctgaacaatttaatatccctgggcttgggagaaaacttgttcacaggtaccattccagcttctattgggaagttacaaaagctgcaaatgttacatttatattccaatagattatcaggccggatcccatcttccttagggaacctcacccaattgtttcaactcggtatgtttgaaaatgaattagaaggaagcattcctccaaatattggtgactgcaaaaatctgcaaatgatggatatatcacacaataagcttagtggagatataccatcacaggtcattggtctgtcctccttctctctcttgctcaacttatcgcaaaactcgcttactggcattctgcctgtggaagtgggtaagctgaagaatatcaatatactggacatctttgataattatttaaccggagggattccaaaaattattggaggctgtctgagccttggatttctttacctacaagggaaccactttcaaggaatcataccttcttctttgttagctttgagaggtcttcagtatctagatctttcacgaaacaacttgtcaggacatattccaaaagacatacagaggcttccattcttgaaatatttgaacctttcgtccaataatctggagggtgaggcaccaaaaggaggagtttttcaaaatacaagtgcaatatcattgaatggaaatagcaaactttgtggtggtgtttcggaattgcagctaccagcatgccccgtcaaagtcccaaagcagagaaagttgcacggcttcaaactaaagttcacaatttctttagttgctagatgctctcttctgtttgcagtgatcatagctctttattggaggagaaaaactcaaaagactaaaccgctatctccagtgtcatcaatcaaattccttccaaaggtttcataccagacacttcatcaacctactagcagattctctctgagtaatcaaattggatcaggaggttttggttctgtatacaaagggattattgatcaagaagaaaacaatgttgttgccataaaggtcctcaaccttcaagagaaaggagcttccaagagtttcgtggcagaatgcaatgcactgagaaatatttattggaggagaaaaactcaaaagactaaaccgctatctccagtgtcatcaatcaaattccttccaaaggtttcataccagacacttcatcaacctactagcagattctctctgagtaatcaaattggatcaggaggttttggttctgtatacaaagggattattgatcaagaagaaaacaatgttgttgccataaaggtcctcaaccttcaagagaaaggagcttccaagagtttcgaggcagaatgcaatgcactgagaaatattcggcacaggaaccttgtgaagatcttaacatgttgctccagcacagattacaatggtaatgacttcaaagctctagtttttgagaatatgtcaactggaagtctggaggagtggctgcataaagaaaaccaatcaaggagtttgaaccttcttcaaagactgaatattgctgttgatgtggcttctgcattgtgttatcttcatgaccattgtgaaccacaaatcattcactgcgacattaagccgagcaacgttcttcttgatgatgaaatggtttctcgtgttggagattttgggttagcaagactcatctcaacgacaatggactcctctcaaattcaaagtagcacagttgggttaaagggaacaattggctatgctgctccaggaagaagaccgatcgacgaaatgtttaaagaggatttgaacctccataactttgtcaagatgaccataccaaaaagagtgatggagattgtagattatactcttcttgccactttaaaagatagagcacctgcaacatcacaaaatgtagtgaactacatcagtggttataataatgaaatcgaagcagttgaagaaaacattgacaatgagaatttaagcaagatgaacacttatgtgtggaagtgcatacttccaacccttaagattggacttgcatgctcggaagaatcaccaaggaatagaatgtctatggaggaggtccacatgaagctacaccatataaaagatgcttgcactggtgttgacatctgtcaagaaaggccaggaagaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1126

Amino Acids

124.28

Weight (kDa)

9.01

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1064, 3153
AarI	CACCTGC	2 cut(s)	44, 3121
Acc36I	ACCTGC	2 cut(s)	44, 3121
Acc65I	GGTACC	1 cut(s)	1274
AccB1I	GGYRCC	2 cut(s)	1274, 1858
AccB7I	CCANNNNNTGG	2 cut(s)	341, 1436
AccI	GTMKAC	2 cut(s)	2211, 2478
AccII	CGCG	1 cut(s)	1201
AciI	CCGC	5 cut(s)	404, 497, 529, 2093, 2360
AclI	AACGTT	1 cut(s)	2847
AclWI	GGATC	6 cut(s)	194, 754, 1345, 1358, 2197, 2464
AcoI	YGGCCR	1 cut(s)	964
AcuI	CTGAAG	4 cut(s)	352, 534, 1613, 1730
AfaI	GTAC	3 cut(s)	299, 869, 1276
AfeI	AGCGCT	1 cut(s)	936
AfiI	CCNNNNNNNGG	8 cut(s)	341, 360, 629, 1252, 1436, 1868, 2128, 2395
AflII	CTTAAG	1 cut(s)	3245
AflIII	ACRYGT	1 cut(s)	2624
AjnI	CCWGG	5 cut(s)	253, 660, 1245, 2980, 3367
AjuI	GAANNNNNNNTTGG	2 cut(s)	2314, 2346
AleI	CACNNNNGTG	1 cut(s)	3218
AloI	GAACNNNNNNTCC	4 cut(s)	408, 440, 1820, 1852
Alw21I	GWGCWC	1 cut(s)	3112
Alw26I	GTCTC	2 cut(s)	743, 1088
AlwI	GGATC	6 cut(s)	194, 754, 1345, 1358, 2197, 2464
Aor51HI	AGCGCT	1 cut(s)	936
AoxI	GGCC	5 cut(s)	251, 703, 964, 1345, 3365
ApeKI	GCWGC	6 cut(s)	684, 1083, 1309, 1942, 2710, 2975
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
Asp700I	GAANNNNTTC	3 cut(s)	637, 797, 1039
Asp718I	GGTACC	1 cut(s)	1274
AspLEI	GCGC	2 cut(s)	937, 1201
AspS9I	GGNCC	3 cut(s)	2260, 2527, 3304
AsuHPI	GGTGA	5 cut(s)	25, 1366, 1451, 1865, 3267
AvaII	GGWCC	3 cut(s)	2260, 2527, 3304
AxyI	CCTNAGG	1 cut(s)	1363
BalI	TGGCCA	1 cut(s)	966
BamHI	GGATCC	1 cut(s)	1350
BanI	GGYRCC	2 cut(s)	1274, 1858
BauI	CACGAG	1 cut(s)	2874
BbsI	GAAGAC	2 cut(s)	1736, 2995
Bbv12I	GWGCWC	1 cut(s)	3112
BbvI	GCAGC	6 cut(s)	696, 1095, 1296, 1954, 2697, 2962
BccI	CCATC	5 cut(s)	38, 1363, 1456, 1507, 3058
BceAI	ACGGC	2 cut(s)	290, 2005
BciT130I	CCWGG	5 cut(s)	255, 662, 1247, 2982, 3369
BclI	TGATCA	3 cut(s)	2049, 2227, 2494
BcoDI	GTCTC	2 cut(s)	743, 1088
BfaI	CTAG	9 cut(s)	44, 701, 872, 1031, 1754, 2025, 2160, 2427, 2669
BfmI	CTRYAG	1 cut(s)	1143
BfoI	RGCGCY	1 cut(s)	938
BfrI	CTTAAG	1 cut(s)	3245
BfuAI	ACCTGC	2 cut(s)	44, 3121
BglII	AGATCT	2 cut(s)	1756, 2616
BisI	GCNGC	6 cut(s)	685, 1084, 1310, 1943, 2711, 2976
BlsI	GCNGC	6 cut(s)	686, 1085, 1311, 1944, 2712, 2977
Bme1390I	CCNGG	5 cut(s)	255, 662, 1247, 2982, 3369
Bme18I	GGWCC	3 cut(s)	2260, 2527, 3304
BmgT120I	GGNCC	3 cut(s)	2260, 2527, 3304
BmiI	GGNNCC	8 cut(s)	325, 431, 1276, 1352, 1370, 1697, 1860, 2606
BmrFI	CCNGG	5 cut(s)	255, 662, 1247, 2982, 3369
BmsI	GCATC	6 cut(s)	286, 516, 589, 624, 2018, 3322
BoxI	GACNNNNGTC	1 cut(s)	3354
BpiI	GAAGAC	2 cut(s)	1736, 2995
BplI	GAGNNNNNCTC	6 cut(s)	545, 577, 2062, 2094, 2329, 2361
BpmI	CTGGAG	8 cut(s)	986, 1112, 1868, 2085, 2352, 2617, 2720, 2964
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	7 cut(s)	627, 660, 1180, 1245, 1246, 1672, 3278
BsaWI	WCCGGW	2 cut(s)	536, 1634
Bsc4I	CCNNNNNNNGG	8 cut(s)	341, 360, 629, 1252, 1436, 1868, 2128, 2395
Bse1I	ACTGG	7 cut(s)	476, 1567, 1614, 2102, 2369, 2695, 3346
Bse21I	CCTNAGG	1 cut(s)	1363
Bse3DI	GCAATG	3 cut(s)	154, 2317, 2584
BseBI	CCWGG	5 cut(s)	255, 662, 1247, 2982, 3369
BseDI	CCNNGG	7 cut(s)	627, 660, 1180, 1245, 1246, 1672, 3278
BseGI	GGATG	2 cut(s)	97, 615
BseLI	CCNNNNNNNGG	8 cut(s)	341, 360, 629, 1252, 1436, 1868, 2128, 2395
BseMI	GCAATG	3 cut(s)	154, 2317, 2584
BseNI	ACTGG	7 cut(s)	476, 1567, 1614, 2102, 2369, 2695, 3346
BseRI	GAGGAG	6 cut(s)	1884, 2083, 2350, 2717, 2914, 3314
BseXI	GCAGC	6 cut(s)	696, 1095, 1296, 1954, 2697, 2962
BseYI	CCCAGC	1 cut(s)	901
Bsh1236I	CGCG	1 cut(s)	1201
Bsh1285I	CGRYCG	1 cut(s)	2997
BshFI	GGCC	5 cut(s)	253, 705, 966, 1347, 3367
BshNI	GGYRCC	2 cut(s)	1274, 1858
BsiEI	CGRYCG	1 cut(s)	2997
BsiHKAI	GWGCWC	1 cut(s)	3112
BsiSI	CCGG	4 cut(s)	427, 537, 1348, 1635
BslFI	GGGAC	2 cut(s)	377, 1952
BslI	CCNNNNNNNGG	8 cut(s)	341, 360, 629, 1252, 1436, 1868, 2128, 2395
BsmAI	GTCTC	2 cut(s)	743, 1088
BsmFI	GGGAC	2 cut(s)	377, 1952
BsmI	GAATGC	4 cut(s)	1422, 1566, 2312, 2579
BsnI	GGCC	5 cut(s)	253, 705, 966, 1347, 3367
Bso31I	GGTCTC	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	3112
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	5 cut(s)	404, 497, 529, 2093, 2360
BspANI	GGCC	5 cut(s)	253, 705, 966, 1347, 3367
BspFNI	CGCG	1 cut(s)	1201
BspHI	TCATGA	1 cut(s)	2797
BspLI	GGNNCC	8 cut(s)	325, 431, 1276, 1352, 1370, 1697, 1860, 2606
BspMI	ACCTGC	2 cut(s)	44, 3121
BspPI	GGATC	6 cut(s)	194, 754, 1345, 1358, 2197, 2464
BspT107I	GGYRCC	2 cut(s)	1274, 1858
BspTI	CTTAAG	1 cut(s)	3245
BspTNI	GGTCTC	1 cut(s)	743
BsrDI	GCAATG	3 cut(s)	154, 2317, 2584
BsrI	ACTGG	7 cut(s)	476, 1567, 1614, 2102, 2369, 2695, 3346
BssECI	CCNNGG	7 cut(s)	627, 660, 1180, 1245, 1246, 1672, 3278
BssNAI	GTATAC	2 cut(s)	2212, 2479
BssSI	CACGAG	1 cut(s)	2874
BssT1I	CCWWGG	4 cut(s)	627, 1180, 1672, 3278
Bst1107I	GTATAC	2 cut(s)	2212, 2479
Bst2BI	CACGAG	1 cut(s)	2874
Bst2UI	CCWGG	5 cut(s)	255, 662, 1247, 2982, 3369
Bst4CI	ACNGT	3 cut(s)	130, 867, 2947
Bst6I	CTCTTC	2 cut(s)	2040, 3090
BstAFI	CTTAAG	1 cut(s)	3245
BstC8I	GCNNGC	3 cut(s)	1954, 3262, 3337
BstDSI	CCRYGG	1 cut(s)	627
BstENI	CCTNNNNNAGG	3 cut(s)	358, 2126, 2393
BstF5I	GGATG	2 cut(s)	97, 615
BstFNI	CGCG	1 cut(s)	1201
BstH2I	RGCGCY	1 cut(s)	938
BstHHI	GCGC	2 cut(s)	937, 1201
BstMAI	GTCTC	2 cut(s)	743, 1088
BstMCI	CGRYCG	1 cut(s)	2997
BstMWI	GCNNNNNNNGC	4 cut(s)	393, 934, 1555, 1668
BstNI	CCWGG	5 cut(s)	255, 662, 1247, 2982, 3369
BstNSI	RCATGY	4 cut(s)	850, 1956, 2628, 3264
BstPAI	GACNNNNGTC	1 cut(s)	3354
BstSCI	CCNGG	5 cut(s)	253, 660, 1245, 2980, 3367
BstSFI	CTRYAG	1 cut(s)	1143
BstUI	CGCG	1 cut(s)	1201
BstV1I	GCAGC	6 cut(s)	696, 1095, 1296, 1954, 2697, 2962
BstV2I	GAAGAC	2 cut(s)	1736, 2995
BstX2I	RGATCY	3 cut(s)	1350, 1756, 2616
BstXI	CCANNNNNNTGG	1 cut(s)	1846
BstYI	RGATCY	3 cut(s)	1350, 1756, 2616
BstZ17I	GTATAC	2 cut(s)	2212, 2479
Bsu36I	CCTNAGG	1 cut(s)	1363
BsuRI	GGCC	5 cut(s)	253, 705, 966, 1347, 3367
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	97, 615
BtsI	GCAGTG	2 cut(s)	2052, 2824
BtsIMutI	CAGTG	9 cut(s)	126, 2052, 2109, 2315, 2376, 2582, 2824, 3151, 3339
BveI	ACCTGC	2 cut(s)	44, 3121
Cac8I	GCNNGC	3 cut(s)	1954, 3262, 3337
CciI	TCATGA	1 cut(s)	2797
CfoI	GCGC	2 cut(s)	937, 1201
Cfr13I	GGNCC	3 cut(s)	2260, 2527, 3304
Csp6I	GTAC	3 cut(s)	298, 868, 1275
CspCI	CAANNNNNGTGG	2 cut(s)	1903, 1938
CviAII	CATG	9 cut(s)	206, 457, 628, 847, 1953, 2625, 2798, 3261, 3310
CviQI	GTAC	3 cut(s)	298, 868, 1275
DraI	TTTAAA	2 cut(s)	3010, 3099
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	2 cut(s)	2040, 3090
EarI	CTCTTC	2 cut(s)	2040, 3090
Eco130I	CCWWGG	4 cut(s)	627, 1180, 1672, 3278
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	3 cut(s)	2260, 2527, 3304
Eco47III	AGCGCT	1 cut(s)	936
Eco57I	CTGAAG	4 cut(s)	352, 534, 1613, 1730
Eco81I	CCTNAGG	1 cut(s)	1363
EcoNI	CCTNNNNNAGG	3 cut(s)	358, 2126, 2393
EcoO109I	RGGNCCY	2 cut(s)	2260, 2527
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	5 cut(s)	253, 660, 1245, 2980, 3367
EcoT14I	CCWWGG	4 cut(s)	627, 1180, 1672, 3278
EcoT22I	ATGCAT	1 cut(s)	582
ErhI	CCWWGG	4 cut(s)	627, 1180, 1672, 3278
FaeI	CATG	9 cut(s)	209, 460, 631, 850, 1956, 2628, 2801, 3264, 3313
FaqI	GGGAC	2 cut(s)	377, 1952
FatI	CATG	9 cut(s)	205, 456, 627, 846, 1952, 2624, 2797, 3260, 3309
FbaI	TGATCA	3 cut(s)	2049, 2227, 2494
FblI	GTMKAC	2 cut(s)	2211, 2478
Fnu4HI	GCNGC	6 cut(s)	685, 1084, 1310, 1943, 2711, 2976
FokI	GGATG	2 cut(s)	84, 602
Fsp4HI	GCNGC	6 cut(s)	685, 1084, 1310, 1943, 2711, 2976
FspBI	CTAG	9 cut(s)	44, 701, 872, 1031, 1754, 2025, 2160, 2427, 2669
GlaI	GCGC	2 cut(s)	936, 1200
GluI	GCNGC	6 cut(s)	685, 1084, 1310, 1943, 2711, 2976
GsaI	CCCAGC	1 cut(s)	905
GsuI	CTGGAG	8 cut(s)	986, 1112, 1868, 2085, 2352, 2617, 2720, 2964
HaeII	RGCGCY	1 cut(s)	938
HaeIII	GGCC	5 cut(s)	253, 705, 966, 1347, 3367
HapII	CCGG	4 cut(s)	427, 537, 1348, 1635
HhaI	GCGC	2 cut(s)	937, 1201
Hin1II	CATG	9 cut(s)	209, 460, 631, 850, 1956, 2628, 2801, 3264, 3313
Hin6I	GCGC	2 cut(s)	935, 1199
HinP1I	GCGC	2 cut(s)	935, 1199
HincII	GTYRAC	4 cut(s)	481, 1114, 2688, 3349
HindII	GTYRAC	4 cut(s)	481, 1114, 2688, 3349
HindIII	AAGCTT	3 cut(s)	572, 715, 1481
HpaI	GTTAAC	1 cut(s)	1114
HpaII	CCGG	4 cut(s)	427, 537, 1348, 1635
HphI	GGTGA	5 cut(s)	25, 1366, 1451, 1865, 3267
Hpy99I	CGWCG	1 cut(s)	3002
HpyCH4III	ACNGT	3 cut(s)	130, 867, 2947
HpyCH4IV	ACGT	1 cut(s)	2847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	393, 934, 1555, 1668
HpySE526I	ACGT	1 cut(s)	2847
Hsp92II	CATG	9 cut(s)	209, 460, 631, 850, 1956, 2628, 2801, 3264, 3313
HspAI	GCGC	2 cut(s)	935, 1199
KpnI	GGTACC	1 cut(s)	1278
Ksp22I	TGATCA	3 cut(s)	2049, 2227, 2494
KspAI	GTTAAC	1 cut(s)	1114
LmnI	GCTCC	5 cut(s)	435, 2282, 2549, 2636, 2983
Lsp1109I	GCAGC	6 cut(s)	696, 1095, 1296, 1954, 2697, 2962
LweI	GCATC	6 cut(s)	286, 516, 589, 624, 2018, 3322
MaeI	CTAG	9 cut(s)	44, 701, 872, 1031, 1754, 2025, 2160, 2427, 2669
MaeII	ACGT	1 cut(s)	2847
MaeIII	GTNAC	4 cut(s)	286, 1299, 1317, 1439
MfeI	CAATTG	2 cut(s)	1379, 2964
MflI	RGATCY	3 cut(s)	1350, 1756, 2616
MhlI	GDGCHC	1 cut(s)	3112
MlsI	TGGCCA	1 cut(s)	966
MluNI	TGGCCA	1 cut(s)	966
MlyI	GAGTC	3 cut(s)	1162, 2895, 2915
MmeI	TCCRAC	3 cut(s)	457, 2860, 3263
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	3 cut(s)	637, 797, 1039
MscI	TGGCCA	1 cut(s)	966
MslI	CAYNNNNRTG	1 cut(s)	3218
Msp20I	TGGCCA	1 cut(s)	966
MspCI	CTTAAG	1 cut(s)	3245
MspI	CCGG	4 cut(s)	427, 537, 1348, 1635
MspR9I	CCNGG	5 cut(s)	255, 662, 1247, 2982, 3369
MunI	CAATTG	2 cut(s)	1379, 2964
Mva1269I	GAATGC	4 cut(s)	1422, 1566, 2312, 2579
MvaI	CCWGG	5 cut(s)	255, 662, 1247, 2982, 3369
MvnI	CGCG	1 cut(s)	1201
MwoI	GCNNNNNNNGC	4 cut(s)	393, 934, 1555, 1668
NcoI	CCATGG	1 cut(s)	627
NlaIII	CATG	9 cut(s)	209, 460, 631, 850, 1956, 2628, 2801, 3264, 3313
NlaIV	GGNNCC	8 cut(s)	325, 431, 1276, 1352, 1370, 1697, 1860, 2606
NmeAIII	GCCGAG	1 cut(s)	2865
NmuCI	GTSAC	1 cut(s)	1439
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	4 cut(s)	850, 1956, 2628, 3264
OliI	CACNNNNGTG	1 cut(s)	3218
PaeI	GCATGC	2 cut(s)	1956, 3264
PagI	TCATGA	1 cut(s)	2797
PaqCI	CACCTGC	2 cut(s)	44, 3121
PasI	CCCWGGG	1 cut(s)	1246
PciI	ACATGT	1 cut(s)	2624
PctI	GAATGC	4 cut(s)	1422, 1566, 2312, 2579
PdmI	GAANNNNTTC	3 cut(s)	637, 797, 1039
PfeI	GAWTC	7 cut(s)	400, 1139, 1642, 1710, 2166, 2433, 3272
PflMI	CCANNNNNTGG	2 cut(s)	341, 1436
PfoI	TCCNGGA	1 cut(s)	2980
PkrI	GCNGC	6 cut(s)	686, 1085, 1311, 1944, 2712, 2977
Ple19I	CGATCG	1 cut(s)	2997
PleI	GAGTC	3 cut(s)	1162, 2895, 2915
PpsI	GAGTC	3 cut(s)	1162, 2895, 2915
PpuMI	RGGWCCY	2 cut(s)	2260, 2527
PscI	ACATGT	1 cut(s)	2624
PshAI	GACNNNNGTC	1 cut(s)	3354
PsiI	TTATAA	2 cut(s)	1064, 3153
Psp1406I	AACGTT	1 cut(s)	2847
Psp5II	RGGWCCY	2 cut(s)	2260, 2527
Psp6I	CCWGG	5 cut(s)	253, 660, 1245, 2980, 3367
PspFI	CCCAGC	1 cut(s)	901
PspGI	CCWGG	5 cut(s)	253, 660, 1245, 2980, 3367
PspN4I	GGNNCC	8 cut(s)	325, 431, 1276, 1352, 1370, 1697, 1860, 2606
PspPI	GGNCC	3 cut(s)	2260, 2527, 3304
PspPPI	RGGWCCY	2 cut(s)	2260, 2527
PsuI	RGATCY	3 cut(s)	1350, 1756, 2616
PvuI	CGATCG	1 cut(s)	2997
RsaI	GTAC	3 cut(s)	299, 869, 1276
RsaNI	GTAC	3 cut(s)	298, 868, 1275
RseI	CAYNNNNRTG	1 cut(s)	3218
SatI	GCNGC	6 cut(s)	685, 1084, 1310, 1943, 2711, 2976
Sau96I	GGNCC	3 cut(s)	2260, 2527, 3304
SchI	GAGTC	3 cut(s)	1162, 2895, 2915
ScrFI	CCNGG	5 cut(s)	255, 662, 1247, 2982, 3369
SduI	GDGCHC	1 cut(s)	3112
SfaNI	GCATC	6 cut(s)	286, 516, 589, 624, 2018, 3322
SfcI	CTRYAG	1 cut(s)	1143
SinI	GGWCC	3 cut(s)	2260, 2527, 3304
SmiMI	CAYNNNNRTG	1 cut(s)	3218
SmlI	CTYRAG	1 cut(s)	3245
SmoI	CTYRAG	1 cut(s)	3245
SphI	GCATGC	2 cut(s)	1956, 3264
SsiI	CCGC	5 cut(s)	404, 497, 529, 2093, 2360
SspI	AATATT	6 cut(s)	25, 1435, 1823, 2326, 2593, 2761
SspMI	CTAG	9 cut(s)	44, 701, 872, 1031, 1754, 2025, 2160, 2427, 2669
StyD4I	CCNGG	5 cut(s)	253, 660, 1245, 2980, 3367
StyI	CCWWGG	4 cut(s)	627, 1180, 1672, 3278
TaaI	ACNGT	3 cut(s)	130, 867, 2947
TaiI	ACGT	1 cut(s)	2850
TaqI	TCGA	3 cut(s)	2565, 2997, 3165
TaqII	GACCGA	1 cut(s)	3007
TfiI	GAWTC	7 cut(s)	400, 1139, 1642, 1710, 2166, 2433, 3272
TscAI	CASTG	9 cut(s)	133, 2052, 2109, 2322, 2376, 2589, 2831, 3151, 3346
TseFI	GTSAC	1 cut(s)	1439
TseI	GCWGC	6 cut(s)	684, 1083, 1309, 1942, 2710, 2975
Tsp45I	GTSAC	1 cut(s)	1439
TspGWI	ACGGA	2 cut(s)	223, 336
TspRI	CASTG	9 cut(s)	133, 2052, 2109, 2322, 2376, 2589, 2831, 3151, 3346
Van91I	CCANNNNNTGG	2 cut(s)	341, 1436
Vha464I	CTTAAG	1 cut(s)	3245
VpaK11BI	GGWCC	3 cut(s)	2260, 2527, 3304
XagI	CCTNNNNNAGG	3 cut(s)	358, 2126, 2393
XbaI	TCTAGA	1 cut(s)	1753
XceI	RCATGY	4 cut(s)	850, 1956, 2628, 3264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2296
XmiI	GTMKAC	2 cut(s)	2211, 2478
XmnI	GAANNNNTTC	3 cut(s)	637, 797, 1039
XspI	CTAG	9 cut(s)	44, 701, 872, 1031, 1754, 2025, 2160, 2427, 2669
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.