Rw0G015480
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00712
Physical Location & Seq
Forward (+)
27565 .. 34895
7331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015480.1

Sequence Viewer

Length: 1257 bp
ATGGAGCTTCATATGCTCAACTTCTGTGCATTTCGGTCTACCTACCTTCATGTCATGACCACCCTTTTCCTTCTCACCAACCTTTTCCAACCTACCATCTTTGCAAATGCATTGAACAATGAAACCGATCGCTTGGCTTTGCTGAAATTTAAAGATTGCATAACCACCGATCCAGATGGGCTGTTGAACTCATGGAATGACTCCGTCCACTTCTGCAAATGGCAAGGAATTACTTGCATCACACCTTCCTTGGGGAATCTTTCATCGCTCACTCTACTTTCCTTAGAACACAATAATTTGGTGGGCACCGTTCCAGAGGTGCTAGGCCGATTGAGAAGCTTATCTACTTTTATAAGTAGTTTCAATAATCTCTCTGGTATGATCCCTCCCTCCCTTTTTAACATATCAGCTATCAAGATCATCTCACTTTCGGATAATAAGTTTAAGGGCAGTATTCCACTTAGGATAGGCCTAAACATGCCTAATCTCCAATTCCTGACGCTTGGTGAAAATGAATTCTCTGGACAAATCCCAGCTGCACTTTCCAACGCTTCTCAGCTTCAAGAGGTTGATTTTGGGAGAAATAATTTTACCGGGCAAGTTCCCACAAGTTTTGGAAATTTTCCTAATCTCCAGCGGCTCAGCTTCGAGATCAACAATCTAGGAACTAATTCATCAAATGATTTAGGATTTATAACATTATTGACAAATTGCAGCAATTTGAGGGGGCTTTCTGTGAGTCTGAACAATTTTGGAGGTGTTTTACCCAGCACTGTAGCCAATTTCTCAACCCAAATGACTCGACTCTACCTTGGGCTCAATCAAATAGCGGGAACGGTTCCTGAAACATTAGGAAATCTCTGCAATTTAATAATCCTGACCCTGGACGAAAACTTGTTCACAGGTACAATTCCAGCTTCTTTTGGGAAGTTACAAAAGCTGCAAATATTATATTTACATTCCAATAGATTATCAGGCCGGATCCCAGCTTCCTTAGGAAACCTCACCCAATTGTATCAACTCTACTTATTTGAAAATGAATTAGAAGGAAACATTCCTCCAAATATTGGTAACTGCGAAAATCTGCAGGTGATGGATATATCACACAATAAGCTTAGTGGAGATATACCATCACAGGTCATTGGTCTGTCCTCATTCTCTATCTTGCTCAACTTATCCCAAAACTTGTTAACTGGCATTCTGCCTGTGGAAGGAACCACTTTCAAGGAATCATACCTTCTTCTTTTGCTGCTTTGA

Protein Analysis

418

Amino Acids

45.86

Weight (kDa)

5.53

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 79 3.9e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 270 - 344 9e-08 Leucine-rich repeat region
LRR_8 PF13855 289 - 348 7.8e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 353, 695
AarI CACCTGC 1 cut(s) 1078
Acc36I ACCTGC 1 cut(s) 1078
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccI GTMKAC 1 cut(s) 38
AciI CCGC 2 cut(s) 637, 830
AclWI GGATC 4 cut(s) 164, 376, 976, 989
AcsI RAATTY 3 cut(s) 146, 515, 619
AfaI GTAC 1 cut(s) 907
AfiI CCNNNNNNNGG 4 cut(s) 251, 883, 1067, 1211
AgsI TTSAA 6 cut(s) 115, 187, 364, 563, 1034, 1225
AjnI CCWGG 1 cut(s) 882
AlwI GGATC 4 cut(s) 164, 376, 976, 989
AoxI GGCC 3 cut(s) 325, 469, 976
ApeKI GCWGC 4 cut(s) 536, 714, 940, 1249
ApoI RAATTY 3 cut(s) 146, 515, 619
Asp700I GAANNNNTTC 1 cut(s) 670
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 4 cut(s) 67, 518, 997, 1102
AxyI CCTNAGG 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 308
BamHI GGATCC 1 cut(s) 981
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 819
BarI GAAGNNNNNNTAC 2 cut(s) 328, 360
BbvI GCAGC 4 cut(s) 523, 726, 927, 1236
BccI CCATC 4 cut(s) 104, 170, 1087, 1138
BciT130I CCWGG 1 cut(s) 884
BcnI CCSGG 1 cut(s) 595
BfaI CTAG 2 cut(s) 323, 662
BfmI CTRYAG 2 cut(s) 774, 1085
BfuAI ACCTGC 1 cut(s) 1078
BisI GCNGC 5 cut(s) 537, 638, 715, 941, 1250
BlpI GCTNAGC 1 cut(s) 641
BlsI GCNGC 5 cut(s) 538, 639, 716, 942, 1251
Bme1390I CCNGG 2 cut(s) 595, 884
BmiI GGNNCC 4 cut(s) 307, 840, 983, 1216
BmrFI CCNGG 2 cut(s) 595, 884
BmsI GCATC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 617
Bpu1102I GCTNAGC 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 595
BsaJI CCNNGG 3 cut(s) 249, 811, 882
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 883, 1067, 1211
Bse1I ACTGG 1 cut(s) 1198
Bse21I CCTNAGG 1 cut(s) 994
BseBI CCWGG 1 cut(s) 884
BseDI CCNNGG 3 cut(s) 249, 811, 882
BseLI CCNNNNNNNGG 4 cut(s) 251, 883, 1067, 1211
BseMII CTCAG 2 cut(s) 569, 655
BseNI ACTGG 1 cut(s) 1198
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 4 cut(s) 523, 726, 927, 1236
BseYI CCCAGC 3 cut(s) 532, 767, 985
BsgI GTGCAG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 327, 471, 978
BshNI GGYRCC 1 cut(s) 305
BsiEI CGRYCG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 594, 979
BslI CCNNNNNNNGG 4 cut(s) 251, 883, 1067, 1211
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 3 cut(s) 327, 471, 978
Bsp1286I GDGCHC 2 cut(s) 308, 819
Bsp143I GATC 6 cut(s) 127, 169, 381, 417, 651, 981
Bsp1720I GCTNAGC 1 cut(s) 641
BspACI CCGC 2 cut(s) 637, 830
BspANI GGCC 3 cut(s) 327, 471, 978
BspCNI CTCAG 2 cut(s) 568, 654
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 4 cut(s) 307, 840, 983, 1216
BspMAI CTGCAG 1 cut(s) 1089
BspMI ACCTGC 1 cut(s) 1078
BspPI GGATC 4 cut(s) 164, 376, 976, 989
BspT107I GGYRCC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 1198
BssECI CCNNGG 3 cut(s) 249, 811, 882
BssMI GATC 6 cut(s) 127, 169, 381, 417, 651, 981
BssT1I CCWWGG 2 cut(s) 249, 811
Bst2UI CCWGG 1 cut(s) 884
Bst4CI ACNGT 3 cut(s) 310, 775, 838
BstDEI CTNAG 6 cut(s) 283, 461, 555, 641, 994, 1115
BstENI CCTNNNNNAGG 1 cut(s) 1209
BstKTI GATC 6 cut(s) 130, 172, 384, 420, 654, 984
BstMBI GATC 6 cut(s) 127, 169, 381, 417, 651, 981
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 884
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 593, 882
BstSFI CTRYAG 2 cut(s) 774, 1085
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 523, 726, 927, 1236
BstX2I RGATCY 1 cut(s) 981
BstYI RGATCY 1 cut(s) 981
Bsu36I CCTNAGG 1 cut(s) 994
BsuRI GGCC 3 cut(s) 327, 471, 978
BtgZI GCGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 771
BveI ACCTGC 1 cut(s) 1078
CciI TCATGA 1 cut(s) 54
CseI GACGC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 906
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 4 cut(s) 50, 55, 192, 478
CviQI GTAC 1 cut(s) 906
DdeI CTNAG 6 cut(s) 283, 461, 555, 641, 994, 1115
DpnI GATC 6 cut(s) 129, 171, 383, 419, 653, 983
DpnII GATC 6 cut(s) 127, 169, 381, 417, 651, 981
DraI TTTAAA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 249, 811
Eco147I AGGCCT 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 819
Eco81I CCTNAGG 1 cut(s) 994
EcoNI CCTNNNNNAGG 1 cut(s) 1209
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 882
EcoT14I CCWWGG 2 cut(s) 249, 811
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 2 cut(s) 249, 811
FaeI CATG 4 cut(s) 53, 58, 195, 481
FatI CATG 4 cut(s) 49, 54, 191, 477
FauI CCCGC 1 cut(s) 823
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 5 cut(s) 537, 638, 715, 941, 1250
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 5 cut(s) 537, 638, 715, 941, 1250
FspBI CTAG 2 cut(s) 323, 662
GluI GCNGC 5 cut(s) 537, 638, 715, 941, 1250
GsaI CCCAGC 3 cut(s) 536, 771, 989
GsuI CTGGAG 1 cut(s) 617
HaeIII GGCC 3 cut(s) 327, 471, 978
HapII CCGG 2 cut(s) 594, 979
HgaI GACGC 1 cut(s) 508
Hin1II CATG 4 cut(s) 53, 58, 195, 481
HincII GTYRAC 1 cut(s) 1191
HindII GTYRAC 1 cut(s) 1191
HindIII AAGCTT 2 cut(s) 337, 1112
HinfI GANTC 6 cut(s) 200, 256, 739, 799, 804, 1229
HpaI GTTAAC 1 cut(s) 1191
HpaII CCGG 2 cut(s) 594, 979
HphI GGTGA 4 cut(s) 67, 518, 997, 1102
Hpy166II GTNNAC 4 cut(s) 39, 208, 900, 1191
Hpy188I TCNGA 2 cut(s) 433, 744
Hpy8I GTNNAC 4 cut(s) 39, 208, 900, 1191
HpyAV CCTTC 6 cut(s) 56, 80, 255, 1040, 1205, 1247
HpyCH4III ACNGT 3 cut(s) 310, 775, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 6 cut(s) 283, 461, 555, 641, 994, 1115
Hsp92II CATG 4 cut(s) 53, 58, 195, 481
KspAI GTTAAC 1 cut(s) 1191
Kzo9I GATC 6 cut(s) 127, 169, 381, 417, 651, 981
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 523, 726, 927, 1236
LweI GCATC 1 cut(s) 246
MaeI CTAG 2 cut(s) 323, 662
MaeIII GTNAC 2 cut(s) 930, 1070
MalI GATC 6 cut(s) 129, 171, 383, 419, 653, 983
MboI GATC 6 cut(s) 127, 169, 381, 417, 651, 981
MboII GAAGA 1 cut(s) 1232
MfeI CAATTG 1 cut(s) 1010
MflI RGATCY 1 cut(s) 981
MhlI GDGCHC 2 cut(s) 308, 819
MlyI GAGTC 4 cut(s) 194, 748, 793, 798
MmeI TCCRAC 2 cut(s) 112, 570
MnlI CCTC 9 cut(s) 310, 396, 400, 559, 717, 749, 1013, 1068, 1162
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 670
MseI TTAA 5 cut(s) 150, 399, 444, 869, 1190
MspA1I CMGCKG 2 cut(s) 536, 637
MspI CCGG 2 cut(s) 594, 979
MspR9I CCNGG 2 cut(s) 595, 884
MunI CAATTG 1 cut(s) 1010
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 1 cut(s) 884
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 595
NdeI CATATG 1 cut(s) 12
NdeII GATC 6 cut(s) 127, 169, 381, 417, 651, 981
NlaIII CATG 4 cut(s) 53, 58, 195, 481
NlaIV GGNNCC 4 cut(s) 307, 840, 983, 1216
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 481
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 471
PctI GAATGC 1 cut(s) 1197
PdmI GAANNNNTTC 1 cut(s) 670
PfeI GAWTC 2 cut(s) 256, 1229
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 1067
PkrI GCNGC 5 cut(s) 538, 639, 716, 942, 1251
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 4 cut(s) 194, 747, 793, 798
PpsI GAGTC 4 cut(s) 194, 747, 793, 798
PsiI TTATAA 2 cut(s) 353, 695
Psp6I CCWGG 1 cut(s) 882
PspFI CCCAGC 3 cut(s) 532, 767, 985
PspGI CCWGG 1 cut(s) 882
PspN4I GGNNCC 4 cut(s) 307, 840, 983, 1216
PstI CTGCAG 1 cut(s) 1089
PsuI RGATCY 1 cut(s) 981
PsyI GACNNNGTC 1 cut(s) 203
PvuI CGATCG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 907
RsaNI GTAC 1 cut(s) 906
SaqAI TTAA 5 cut(s) 150, 399, 444, 869, 1190
SatI GCNGC 5 cut(s) 537, 638, 715, 941, 1250
Sau3AI GATC 6 cut(s) 127, 169, 381, 417, 651, 981
SchI GAGTC 4 cut(s) 194, 748, 793, 798
ScrFI CCNGG 2 cut(s) 595, 884
SduI GDGCHC 2 cut(s) 308, 819
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 2 cut(s) 774, 1085
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 2 cut(s) 637, 830
SspI AATATT 2 cut(s) 948, 1066
SspMI CTAG 2 cut(s) 323, 662
StuI AGGCCT 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 593, 882
StyI CCWWGG 2 cut(s) 249, 811
TaaI ACNGT 3 cut(s) 310, 775, 838
TaqI TCGA 2 cut(s) 648, 802
TaqII GACCGA 1 cut(s) 24
TauI GCSGC 1 cut(s) 640
TfiI GAWTC 2 cut(s) 256, 1229
Tru1I TTAA 5 cut(s) 150, 399, 444, 869, 1190
Tru9I TTAA 5 cut(s) 150, 399, 444, 869, 1190
TscAI CASTG 1 cut(s) 778
TseI GCWGC 4 cut(s) 536, 714, 940, 1249
TspDTI ATGAA 6 cut(s) 38, 135, 252, 528, 663, 1053
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 778
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 1067
XagI CCTNNNNNAGG 1 cut(s) 1209
XapI RAATTY 3 cut(s) 146, 515, 619
XceI RCATGY 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 670
XspI CTAG 2 cut(s) 323, 662
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.