RLG00000027084
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
8271135 .. 8275098
3964 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027084

Sequence Viewer

Length: 3171 bp
ATGGAGAGTATCACATACCTTCATGTCCTGACCTTCCTCCTTTTCATCAACTTTTTACAACCCACCACTGTTGTAAGTTCATTTGGCAATGAAACCGATCGCTTGGCTTTGCTAAAATTCAAAGATTGCATAGCCTCTGATCCACATGAGCTTTTGAACTCATGGAATGACTCAATTCATTACTGCAAATGGCCTGGAATTACTTGTGGCAGACGACATCTAAGAGTAACAGGCTTGAGCCTACCACACGCTGAATTGCACGGAACCATATCACCATACATTGGCAACCTCTCCTTTCTTAGGAACTTCGACCTTTACAACAATAGCTTCTCTGGCAACATTCCTCAACAAGTTGATCATTTGTTCAGATTGCGACGTCTCAATCTACCTGTCAACAAGTTGGAGGGGGGAATTCCAGTCAATTTGACCTTCTGCTCAAAATTAAGATTCATAAGCATTGCAGTAAACCGCCTTACCGGCAAAATTCCTTCAGAGATTGGGTCGTTGAAGAAGCTTGTGGATCTTCGTCTTCAGGAAAACAATCTGACGGGAGGCATCACACCTTCCTTGGGGAATCTTTCATCGCTCACTCTACTTTCCTTGGAACACAATAATTTGGTGGGCACCTTTCCAGAAGTGCTAGGCCGATTGAGAAGCTTATCTACTTTTATAAGTGGTTTCAATAATCTCTCTGGTTTGATCCCTCCCTCCTTTTTTAACATATCATCTATGGAAAGCTTGTCACTTGCGTATAATAAGTTTAAGGGCAGTATTGCACCTGGTATAGGCCTAAACATGCCTAATCTCCAATTCCTGACGCTTGGTGAAAATGAATTCTATGGACAAATCCCAGCTTCACTTTCCAACGCTTCTCAGCTTCAAGAGCTTGATTTTGGGAGAAATAATTTTGCCGGGCAAGTTCCCGCAAGTTTTGGAAATTTTCCTAATCTCCAGAAGCTCAGCTTCGAGATCAACAATCTAGGAACTAATTCATCTAATGATTTAGGATTTATAACATTCTTGACAAATTGCAGCAATTTGTCTTTGCTTTCTCTGAGTATGAACAATTTTGGAGGTGTTTTACCCAGCACTGTAGCCAATTTCTCAACCCAACTGACTCGACTCTACCTTGGGCTCAATCAAATAGCAGGAACGGTTCCTGAAACATTAGGAAATCTCTGCAATTTAATACTCCTGACCCTGGACAAAAACTTGTTCACAGGTACCATTCCAGCTTCTCTTGGGAAGTTACAAAAGCTGCAAATATTATATTTACATTCCAATAGATTATCAGGCCGATTCCCATCTTCCTTAGGGAACCTCACCCAATTGTTTCATCTCTATTTATTGGAAAATGAATTAGAAGGAAGCATTCCTCCGAATATTGGTAACTGCAAAAATCTACAGGCGATGGATATATCACACAATAAGCTTAGTGGAGATATACCATCACAGGTTATTGGTCTGTCCTCCTTCTCTCTCTTGCTCAACTTATCGCAAAACTCGCTAACTGGCATTCTGCCTGCCGAAGTGGGTAAGCTGAAGAATATCAATACACTGGACATCTCTGATAATAATTTGACCGGAGGAATTCCAGAAATTATTGGAGGCTGTCTGAGCCTTGAATTTCTTTACCTACAAGGGAACCACTTTCAAGGAATCATACCTTCTTCTTTGGCTGCTTTGAGAGGTCTTCAGTATTTAGATCTTTCACGAAACAACTTGTCAGGACATATTCCAAAAGACTTACAGAGGCTTCCATTCTTGATCCATTTGAACCTTTCGTTCAATAATCTGGAGGGTGAGGTACCGAAAGAAAGAGTTTTTCGAAACACAAGTGCAATATCATTGGATGGAAATACCAAACTTTGTGGAGGTGTTTTAGAATTGCAGCTACCAGCATGCCCTATCAAAGTACCAAAGCAGAGAAAGTTGCATGGTTTCAAACTAAGGTACACAATTTCTTTAGTCGCCGGATGCTCTCTTCTATTTGCAGTAATCTTTGCACTTTATTGGAGGATAAAAAATCAAAAGAAGAAACCATTAGCTGAAGTGCCATCAATCAACTTCCTTTCAAAGGTTTCATACCAGACACTTCATCAAGCTACTGGTGGATTCTCTTCAAGCAATCTAATTGGATTAGGCGGTTTTGGCTCTGTATACAAAGGGATTTTTGATCAAGAAGAAAATAACGTAGTTGCCATAAAGGTCCTCAACCTTCAACAGAAAGGAGCTTCCAAGAGTTTTGTGGCAGAATGCAATGCACTCAGAAATATCCGGCACAGGAACCTTGTGAAAATCTTAACATGTTGTTCCAGCACAGATTACAATGGTAATGACTTCAAAGCTCTAGTTTTTGAGTATATGTCAAATGGAAGTTTAGAGGAGTGGTTGCACAGAGAAAACCAATTAGGGAGTCTGAACCTTCTTCAAAGACTGAATATTGCTGTTGATGTGGCTTCTGCATTGTGTTATCTTCATGACCATTGCGAACCACAAATTATTCACTGTGACATGAAGCCAAGCAACGTTCTTTTTGATGATGACATGGTTGCTCGTATCAGTGATTTTGGATTGGCAAGACTCATCCCACCGACCGCGCACTCCTCTGAAAATCAAAGTAGCACAGTTGGGATAAAGGGAACCATTGGCTATGCTGCTCCAGAGTACGCAGCTGGTGTGGGGCCATCAAAGCAAGGGGATGTATATAGTTATGGGATCCTTGTGTTGCAATTATTCACGGGAAGAAGACCCACTGATGAAATGTTTGTAGACGGTTGCAATATCCATACTTTTGTTAAGACGGCCATACAGGGAAGACTTATGCAAATTGTAGATCCTACTCTTGTTGCCACTCTAGAAGAGACTGCAACTTCAACAACAAACAATGAAGTGACCAATATCCGTGGTTACAACAATGAAATCAAAGCTGATGAAGGCAACATTGACAATGAGAATTTAAGCACGATGAACACTTACGTGTGGAAGTGCATACTTCCAACCCTCAAGATTGGACTTGCATGCTTGGAAGAATCACCAAGGAATAGGATGTCTATGGAGGAGGTCCACAGGGAACTACACCATATAAAAAATGCTTACACTGGTGTTGACATCCGTCGAGAGAGGCCAAAAGAAGCTAAACAAGAGGTGGTGTTATTTTCTTCTTTATGA

Protein Analysis

1057

Amino Acids

116.41

Weight (kDa)

7.97

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 69 3.1e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 88 - 238 4.7e-07 Leucine-rich repeat region
LRR_8 PF13855 371 - 430 2.8e-06 Leucine rich repeat
LRR_8 PF13855 419 - 478 9.2e-06 Leucine rich repeat
LRR_8 PF13855 496 - 551 3.6e-06 Leucine rich repeat
LRR_14 PF23598 497 - 601 4.2e-07 Leucine-rich repeat region
LRR_8 PF13855 541 - 599 1e-08 Leucine rich repeat
Pkinase PF00069 708 - 924 1.2e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 710 - 935 5e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 671, 1013
AatII GACGTC 1 cut(s) 379
Acc65I GGTACC 2 cut(s) 1223, 1807
AccB1I GGYRCC 3 cut(s) 623, 1223, 1807
AccB7I CCANNNNNTGG 1 cut(s) 281
AccI GTMKAC 2 cut(s) 2160, 2772
AccII CGCG 1 cut(s) 2600
AciI CCGC 4 cut(s) 469, 924, 2145, 2598
AclI AACGTT 1 cut(s) 2529
AclWI GGATC 7 cut(s) 134, 528, 694, 1762, 2713, 2726, 2831
AcoI YGGCCR 1 cut(s) 2805
AcsI RAATTY 8 cut(s) 116, 411, 483, 833, 937, 1590, 1625, 2956
AcuI CTGAAG 5 cut(s) 474, 515, 1562, 1679, 2070
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 5 cut(s) 1225, 1809, 1917, 1955, 2669
AfiI CCNNNNNNNGG 7 cut(s) 281, 300, 569, 785, 1201, 1385, 2077
AflIII ACRYGT 2 cut(s) 2306, 2979
AjnI CCWGG 3 cut(s) 193, 778, 1200
AleI CACNNNNGTG 1 cut(s) 2978
Alw26I GTCTC 2 cut(s) 383, 2858
AlwI GGATC 7 cut(s) 134, 528, 694, 1762, 2713, 2726, 2831
AoxI GGCC 7 cut(s) 191, 643, 787, 1294, 2684, 2805, 3125
ApeKI GCWGC 6 cut(s) 1032, 1258, 1679, 1891, 2657, 2672
ApoI RAATTY 8 cut(s) 116, 411, 483, 833, 937, 1590, 1625, 2956
Asp700I GAANNNNTTC 1 cut(s) 988
Asp718I GGTACC 2 cut(s) 1223, 1807
AspLEI GCGC 1 cut(s) 2602
AspS9I GGNCC 3 cut(s) 2209, 2684, 3064
AsuC2I CCSGG 1 cut(s) 913
AsuHPI GGTGA 5 cut(s) 264, 836, 1315, 1814, 3027
AsuII TTCGAA 1 cut(s) 1828
AvaII GGWCC 2 cut(s) 2209, 3064
AxyI CCTNAGG 1 cut(s) 1312
BaeGI GKGCMC 1 cut(s) 626
BamHI GGATCC 1 cut(s) 2718
BanI GGYRCC 3 cut(s) 623, 1223, 1807
BanII GRGCYC 1 cut(s) 1137
BarI GAAGNNNNNNTAC 2 cut(s) 646, 678
BbsI GAAGAC 4 cut(s) 521, 1685, 2755, 2824
BbvI GCAGC 6 cut(s) 1044, 1245, 1666, 1903, 2644, 2684
BccI CCATC 6 cut(s) 1312, 1405, 1456, 1847, 2065, 2695
BceAI ACGGC 1 cut(s) 2820
BciT130I CCWGG 3 cut(s) 195, 780, 1202
BclI TGATCA 2 cut(s) 355, 2176
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 2 cut(s) 383, 2858
BfaI CTAG 4 cut(s) 641, 980, 2351, 2858
BfmI CTRYAG 2 cut(s) 1092, 1403
BglI GCCNNNNNGGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 1705
BisI GCNGC 6 cut(s) 1033, 1259, 1680, 1892, 2658, 2673
BlpI GCTNAGC 1 cut(s) 959
BlsI GCNGC 6 cut(s) 1034, 1260, 1681, 1893, 2659, 2674
Bme1390I CCNGG 4 cut(s) 195, 780, 913, 1202
Bme18I GGWCC 2 cut(s) 2209, 3064
BmgT120I GGNCC 3 cut(s) 2209, 2684, 3064
BmrFI CCNGG 4 cut(s) 195, 780, 913, 1202
BmsI GCATC 2 cut(s) 564, 1967
BoxI GACNNNNGTC 1 cut(s) 3114
BpiI GAAGAC 4 cut(s) 521, 1685, 2755, 2824
BpmI CTGGAG 3 cut(s) 935, 1817, 2646
Bpu1102I GCTNAGC 1 cut(s) 959
Bpu14I TTCGAA 1 cut(s) 1828
BpuEI CTTGAG 2 cut(s) 256, 2990
BpuMI CCSGG 1 cut(s) 913
BsaAI YACGTR 1 cut(s) 2980
BsaBI GATNNNNATC 1 cut(s) 1303
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 6 cut(s) 567, 600, 1129, 1200, 2905, 3038
BsaWI WCCGGW 1 cut(s) 1583
Bsc4I CCNNNNNNNGG 7 cut(s) 281, 300, 569, 785, 1201, 1385, 2077
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 5 cut(s) 416, 1516, 1563, 2113, 3106
Bse21I CCTNAGG 1 cut(s) 1312
Bse3DI GCAATG 4 cut(s) 94, 456, 2266, 2485
Bse8I GATNNNNATC 1 cut(s) 1303
BseBI CCWGG 3 cut(s) 195, 780, 1202
BseDI CCNNGG 6 cut(s) 567, 600, 1129, 1200, 2905, 3038
BseGI GGATG 6 cut(s) 1858, 1982, 2586, 2707, 3054, 3111
BseJI GATNNNNATC 1 cut(s) 1303
BseLI CCNNNNNNNGG 7 cut(s) 281, 300, 569, 785, 1201, 1385, 2077
BseMI GCAATG 4 cut(s) 94, 456, 2266, 2485
BseMII CTCAG 5 cut(s) 887, 973, 1046, 1607, 2281
BseNI ACTGG 5 cut(s) 416, 1516, 1563, 2113, 3106
BseRI GAGGAG 3 cut(s) 2399, 2596, 3074
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 6 cut(s) 1044, 1245, 1666, 1903, 2644, 2684
BseYI CCCAGC 2 cut(s) 850, 1085
Bsh1236I CGCG 1 cut(s) 2600
Bsh1285I CGRYCG 2 cut(s) 100, 2598
BshFI GGCC 7 cut(s) 193, 645, 789, 1296, 2686, 2807, 3127
BshNI GGYRCC 3 cut(s) 623, 1223, 1807
BsiEI CGRYCG 2 cut(s) 100, 2598
BsiSI CCGG 5 cut(s) 477, 912, 1584, 1974, 2278
BslI CCNNNNNNNGG 7 cut(s) 281, 300, 569, 785, 1201, 1385, 2077
BsmAI GTCTC 2 cut(s) 383, 2858
BsmBI CGTCTC 1 cut(s) 383
BsmI GAATGC 3 cut(s) 1371, 1515, 2261
BsnI GGCC 7 cut(s) 193, 645, 789, 1296, 2686, 2807, 3127
Bsp119I TTCGAA 1 cut(s) 1828
Bsp1286I GDGCHC 2 cut(s) 626, 1137
Bsp1720I GCTNAGC 1 cut(s) 959
BspACI CCGC 4 cut(s) 469, 924, 2145, 2598
BspANI GGCC 7 cut(s) 193, 645, 789, 1296, 2686, 2807, 3127
BspCNI CTCAG 5 cut(s) 886, 972, 1047, 1608, 2280
BspFNI CGCG 1 cut(s) 2600
BspHI TCATGA 1 cut(s) 2479
BspPI GGATC 7 cut(s) 134, 528, 694, 1762, 2713, 2726, 2831
BspT104I TTCGAA 1 cut(s) 1828
BspT107I GGYRCC 3 cut(s) 623, 1223, 1807
BsrDI GCAATG 4 cut(s) 94, 456, 2266, 2485
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 5 cut(s) 416, 1516, 1563, 2113, 3106
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 6 cut(s) 567, 600, 1129, 1200, 2905, 3038
BssNAI GTATAC 1 cut(s) 2161
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 4 cut(s) 567, 600, 1129, 3038
Bst1107I GTATAC 1 cut(s) 2161
Bst2UI CCWGG 3 cut(s) 195, 780, 1202
Bst4CI ACNGT 6 cut(s) 70, 1093, 1156, 2510, 2629, 2777
Bst6I CTCTTC 3 cut(s) 1989, 2125, 2856
BstACI GRCGYC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 2980
BstBI TTCGAA 1 cut(s) 1828
BstC8I GCNNGC 3 cut(s) 1524, 1903, 3022
BstDSI CCRYGG 1 cut(s) 2905
BstENI CCTNNNNNAGG 3 cut(s) 298, 783, 2075
BstF5I GGATG 6 cut(s) 1858, 1982, 2586, 2707, 3054, 3111
BstFNI CGCG 1 cut(s) 2600
BstHHI GCGC 1 cut(s) 2602
BstMAI GTCTC 2 cut(s) 383, 2858
BstMCI CGRYCG 2 cut(s) 100, 2598
BstMWI GCNNNNNNNGC 7 cut(s) 333, 477, 883, 1504, 1617, 2151, 2692
BstNI CCWGG 3 cut(s) 195, 780, 1202
BstNSI RCATGY 4 cut(s) 799, 1905, 2310, 3024
BstPAI GACNNNNGTC 1 cut(s) 3114
BstSCI CCNGG 4 cut(s) 193, 778, 911, 1200
BstSFI CTRYAG 2 cut(s) 1092, 1403
BstSLI GKGCMC 1 cut(s) 626
BstUI CGCG 1 cut(s) 2600
BstV1I GCAGC 6 cut(s) 1044, 1245, 1666, 1903, 2644, 2684
BstV2I GAAGAC 4 cut(s) 521, 1685, 2755, 2824
BstX2I RGATCY 4 cut(s) 520, 1705, 2718, 2836
BstYI RGATCY 4 cut(s) 520, 1705, 2718, 2836
BstZ17I GTATAC 1 cut(s) 2161
Bsu36I CCTNAGG 1 cut(s) 1312
BsuRI GGCC 7 cut(s) 193, 645, 789, 1296, 2686, 2807, 3127
BtgI CCRYGG 1 cut(s) 2905
BtgZI GCGATG 2 cut(s) 567, 1424
BtsCI GGATG 6 cut(s) 1858, 1982, 2586, 2707, 3054, 3111
BtsIMutI CAGTG 7 cut(s) 66, 1089, 1556, 2506, 2569, 2754, 3099
Cac8I GCNNGC 3 cut(s) 1524, 1903, 3022
CciI TCATGA 1 cut(s) 2479
CfoI GCGC 1 cut(s) 2602
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 3 cut(s) 2209, 2684, 3064
CseI GACGC 1 cut(s) 826
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 5 cut(s) 1224, 1808, 1916, 1954, 2668
CspCI CAANNNNNGTGG 6 cut(s) 52, 87, 1852, 1887, 2887, 2922
CviQI GTAC 5 cut(s) 1224, 1808, 1916, 1954, 2668
EaeI YGGCCR 1 cut(s) 2805
Eam1104I CTCTTC 3 cut(s) 1989, 2125, 2856
EarI CTCTTC 3 cut(s) 1989, 2125, 2856
Eco130I CCWWGG 4 cut(s) 567, 600, 1129, 3038
Eco147I AGGCCT 1 cut(s) 789
Eco24I GRGCYC 1 cut(s) 1137
Eco47I GGWCC 2 cut(s) 2209, 3064
Eco57I CTGAAG 5 cut(s) 474, 515, 1562, 1679, 2070
Eco81I CCTNAGG 1 cut(s) 1312
EcoNI CCTNNNNNAGG 3 cut(s) 298, 783, 2075
EcoO109I RGGNCCY 1 cut(s) 2209
EcoRI GAATTC 3 cut(s) 411, 833, 1590
EcoRII CCWGG 3 cut(s) 193, 778, 1200
EcoT14I CCWWGG 4 cut(s) 567, 600, 1129, 3038
EcoT38I GRGCYC 1 cut(s) 1137
ErhI CCWWGG 4 cut(s) 567, 600, 1129, 3038
Esp3I CGTCTC 1 cut(s) 383
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FauI CCCGC 1 cut(s) 931
FbaI TGATCA 2 cut(s) 355, 2176
FblI GTMKAC 2 cut(s) 2160, 2772
Fnu4HI GCNGC 6 cut(s) 1033, 1259, 1680, 1892, 2658, 2673
FokI GGATG 6 cut(s) 1865, 1989, 2573, 2714, 3061, 3098
FriOI GRGCYC 1 cut(s) 1137
Fsp4HI GCNGC 6 cut(s) 1033, 1259, 1680, 1892, 2658, 2673
FspBI CTAG 4 cut(s) 641, 980, 2351, 2858
GlaI GCGC 1 cut(s) 2601
GluI GCNGC 6 cut(s) 1033, 1259, 1680, 1892, 2658, 2673
GsaI CCCAGC 2 cut(s) 854, 1089
GsuI CTGGAG 3 cut(s) 935, 1817, 2646
HaeIII GGCC 7 cut(s) 193, 645, 789, 1296, 2686, 2807, 3127
HapII CCGG 5 cut(s) 477, 912, 1584, 1974, 2278
HgaI GACGC 1 cut(s) 826
HhaI GCGC 1 cut(s) 2602
Hin1I GRCGYC 1 cut(s) 376
Hin6I GCGC 1 cut(s) 2600
HinP1I GCGC 1 cut(s) 2600
HincII GTYRAC 2 cut(s) 394, 3109
HindII GTYRAC 2 cut(s) 394, 3109
HindIII AAGCTT 4 cut(s) 512, 655, 736, 1430
HpaII CCGG 5 cut(s) 477, 912, 1584, 1974, 2278
HphI GGTGA 5 cut(s) 264, 836, 1315, 1814, 3027
Hpy166II GTNNAC 8 cut(s) 394, 466, 1218, 1956, 2161, 2773, 3067, 3109
Hpy8I GTNNAC 8 cut(s) 394, 466, 1218, 1956, 2161, 2773, 3067, 3109
Hpy99I CGWCG 2 cut(s) 378, 3120
HpyCH4III ACNGT 6 cut(s) 70, 1093, 1156, 2510, 2629, 2777
HpyCH4IV ACGT 4 cut(s) 376, 2193, 2529, 2979
HpyF10VI GCNNNNNNNGC 7 cut(s) 333, 477, 883, 1504, 1617, 2151, 2692
HpySE526I ACGT 4 cut(s) 376, 2193, 2529, 2979
Hsp92I GRCGYC 1 cut(s) 376
HspAI GCGC 1 cut(s) 2600
KpnI GGTACC 2 cut(s) 1227, 1811
Ksp22I TGATCA 2 cut(s) 355, 2176
LmnI GCTCC 2 cut(s) 2231, 2665
Lsp1109I GCAGC 6 cut(s) 1044, 1245, 1666, 1903, 2644, 2684
LweI GCATC 2 cut(s) 564, 1967
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 4 cut(s) 641, 980, 2351, 2858
MaeII ACGT 4 cut(s) 376, 2193, 2529, 2979
MaeIII GTNAC 7 cut(s) 226, 741, 1248, 1388, 2510, 2893, 2909
MfeI CAATTG 1 cut(s) 1328
MflI RGATCY 4 cut(s) 520, 1705, 2718, 2836
MhlI GDGCHC 2 cut(s) 626, 1137
MlyI GAGTC 5 cut(s) 164, 1111, 1116, 2425, 2577
MmeI TCCRAC 3 cut(s) 381, 888, 3023
MroXI GAANNNNTTC 1 cut(s) 988
MseI TTAA 7 cut(s) 443, 717, 762, 1187, 2303, 2799, 2960
MslI CAYNNNNRTG 1 cut(s) 2978
MspA1I CMGCKG 1 cut(s) 2675
MspI CCGG 5 cut(s) 477, 912, 1584, 1974, 2278
MspR9I CCNGG 4 cut(s) 195, 780, 913, 1202
MunI CAATTG 1 cut(s) 1328
Mva1269I GAATGC 3 cut(s) 1371, 1515, 2261
MvaI CCWGG 3 cut(s) 195, 780, 1202
MvnI CGCG 1 cut(s) 2600
MwoI GCNNNNNNNGC 7 cut(s) 333, 477, 883, 1504, 1617, 2151, 2692
NciI CCSGG 1 cut(s) 913
NmuCI GTSAC 3 cut(s) 741, 2510, 2893
NspI RCATGY 4 cut(s) 799, 1905, 2310, 3024
NspV TTCGAA 1 cut(s) 1828
OliI CACNNNNGTG 1 cut(s) 2978
PaeI GCATGC 2 cut(s) 1905, 3024
PagI TCATGA 1 cut(s) 2479
PceI AGGCCT 1 cut(s) 789
PciI ACATGT 1 cut(s) 2306
PctI GAATGC 3 cut(s) 1371, 1515, 2261
PdmI GAANNNNTTC 1 cut(s) 988
PfeI GAWTC 6 cut(s) 447, 574, 1299, 1659, 2115, 3032
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 6 cut(s) 1034, 1260, 1681, 1893, 2659, 2674
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 5 cut(s) 164, 1111, 1116, 2424, 2577
PpsI GAGTC 5 cut(s) 164, 1111, 1116, 2424, 2577
Ppu21I YACGTR 1 cut(s) 2980
PpuMI RGGWCCY 1 cut(s) 2209
PscI ACATGT 1 cut(s) 2306
PshAI GACNNNNGTC 1 cut(s) 3114
PsiI TTATAA 2 cut(s) 671, 1013
Psp1406I AACGTT 1 cut(s) 2529
Psp5II RGGWCCY 1 cut(s) 2209
Psp6I CCWGG 3 cut(s) 193, 778, 1200
PspFI CCCAGC 2 cut(s) 850, 1085
PspGI CCWGG 3 cut(s) 193, 778, 1200
PspPI GGNCC 3 cut(s) 2209, 2684, 3064
PspPPI RGGWCCY 1 cut(s) 2209
PsuI RGATCY 4 cut(s) 520, 1705, 2718, 2836
PvuI CGATCG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 2675
RsaI GTAC 5 cut(s) 1225, 1809, 1917, 1955, 2669
RsaNI GTAC 5 cut(s) 1224, 1808, 1916, 1954, 2668
RseI CAYNNNNRTG 1 cut(s) 2978
SaqAI TTAA 7 cut(s) 443, 717, 762, 1187, 2303, 2799, 2960
SatI GCNGC 6 cut(s) 1033, 1259, 1680, 1892, 2658, 2673
Sau96I GGNCC 3 cut(s) 2209, 2684, 3064
SchI GAGTC 5 cut(s) 164, 1111, 1116, 2425, 2577
ScrFI CCNGG 4 cut(s) 195, 780, 913, 1202
SduI GDGCHC 2 cut(s) 626, 1137
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 2 cut(s) 564, 1967
SfcI CTRYAG 2 cut(s) 1092, 1403
SfuI TTCGAA 1 cut(s) 1828
SinI GGWCC 2 cut(s) 2209, 3064
SmiMI CAYNNNNRTG 1 cut(s) 2978
SmlI CTYRAG 2 cut(s) 235, 3005
SmoI CTYRAG 2 cut(s) 235, 3005
SphI GCATGC 2 cut(s) 1905, 3024
SseBI AGGCCT 1 cut(s) 789
SsiI CCGC 4 cut(s) 469, 924, 2145, 2598
SspI AATATT 3 cut(s) 1266, 1384, 2443
SspMI CTAG 4 cut(s) 641, 980, 2351, 2858
StuI AGGCCT 1 cut(s) 789
StyD4I CCNGG 4 cut(s) 193, 778, 911, 1200
StyI CCWWGG 4 cut(s) 567, 600, 1129, 3038
TaaI ACNGT 6 cut(s) 70, 1093, 1156, 2510, 2629, 2777
TaiI ACGT 4 cut(s) 379, 2196, 2532, 2982
TaqI TCGA 5 cut(s) 309, 966, 1120, 1828, 3118
TfiI GAWTC 6 cut(s) 447, 574, 1299, 1659, 2115, 3032
Tru1I TTAA 7 cut(s) 443, 717, 762, 1187, 2303, 2799, 2960
Tru9I TTAA 7 cut(s) 443, 717, 762, 1187, 2303, 2799, 2960
TscAI CASTG 7 cut(s) 73, 1096, 1563, 2513, 2569, 2761, 3106
TseFI GTSAC 3 cut(s) 741, 2510, 2893
TseI GCWGC 6 cut(s) 1032, 1258, 1679, 1891, 2657, 2672
Tsp45I GTSAC 3 cut(s) 741, 2510, 2893
TspGWI ACGGA 3 cut(s) 276, 2894, 3104
TspRI CASTG 7 cut(s) 73, 1096, 1563, 2513, 2569, 2761, 3106
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 2209, 3064
XagI CCTNNNNNAGG 3 cut(s) 298, 783, 2075
XapI RAATTY 8 cut(s) 116, 411, 483, 833, 937, 1590, 1625, 2956
XbaI TCTAGA 1 cut(s) 2857
XceI RCATGY 4 cut(s) 799, 1905, 2310, 3024
XcmI CCANNNNNNNNNTGG 1 cut(s) 2245
XmiI GTMKAC 2 cut(s) 2160, 2772
XmnI GAANNNNTTC 1 cut(s) 988
XspI CTAG 4 cut(s) 641, 980, 2351, 2858
ZraI GACGTC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.