Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

23840561 .. 23842362

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATACGCCGGCGGCGACGCCTATCTCTTCGGCGGATCCAATATCCAGCGCCGACGTCGTTGCCTCCTTTCTCACCGGAGTCCTCGCTGCGGGCGAGAAGTACGAGACCGAAGACGATCGTTTGAGTTGCAGCCCCGCCTTGGCCTTCGGGTCTATGGCGGTGTCGCTTTGGGAGGGAAGCGAGGGGAGGAGGTCGGATACGATCGCCGAGCAGGAGTGCCGACGGTGCTCTCTTCTATTTGCAGTCATCTTAGCTCTTTATTGGATGAGGAGAAAAACTCAAAAGAAGAAACTGTTATCTTCCGTTTCATCAATCAACTTCCTTTCAAAGGTTTCATACCAGACACTTCATCAATCTACTGGCAGATTCTCTTCAAGCAATCAATTTGGATCAGGCGGTTTTGGCTCTGTATACAAAGGGATTCTTGATCAAGAACAAAAAAATGTTGTTGCCATAAAGGTCCTCAACTTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

159

Amino Acids

17.3

Weight (kDa)

8.82

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	6 cut(s)	14, 35, 92, 138, 161, 399
AclWI	GGATC	3 cut(s)	32, 45, 400
AcyI	GRCGYC	2 cut(s)	20, 57
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	91, 142, 331
AgsI	TTSAA	3 cut(s)	330, 378, 476
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	32, 45, 400
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	89, 132
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	76, 144
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	3 cut(s)	15, 90, 133
BlsI	GCNGC	3 cut(s)	16, 91, 134
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BsaHI	GRCGYC	2 cut(s)	20, 57
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 142, 331
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	91, 142, 331
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	205, 286
BseXI	GCAGC	2 cut(s)	76, 144
Bsh1285I	CGRYCG	2 cut(s)	121, 207
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	121, 207
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	11, 78
BslI	CCNNNNNNNGG	3 cut(s)	91, 142, 331
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	37, 118, 204, 392, 430
BspACI	CCGC	6 cut(s)	14, 35, 92, 138, 161, 399
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	32, 45, 400
BspTNI	GGTCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	5 cut(s)	37, 118, 204, 392, 430
BssNAI	GTATAC	1 cut(s)	415
BssNI	GRCGYC	2 cut(s)	20, 57
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	228, 297
Bst6I	CTCTTC	3 cut(s)	34, 240, 379
BstACI	GRCGYC	2 cut(s)	20, 57
BstC8I	GCNNGC	2 cut(s)	12, 94
BstDEI	CTNAG	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	5 cut(s)	40, 121, 207, 395, 433
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	37, 118, 204, 392, 430
BstMCI	CGRYCG	2 cut(s)	121, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 405
BstV1I	GCAGC	2 cut(s)	76, 144
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BstZ17I	GTATAC	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	12, 94
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	4 cut(s)	135, 146, 257, 408
CviKI_1	RGCY	4 cut(s)	135, 146, 257, 408
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	5 cut(s)	39, 120, 206, 394, 432
DpnII	GATC	5 cut(s)	37, 118, 204, 392, 430
Eam1104I	CTCTTC	3 cut(s)	34, 240, 379
EarI	CTCTTC	3 cut(s)	34, 240, 379
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	463
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	141
FaiI	YATR	5 cut(s)	6, 158, 340, 415, 458
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FauI	CCCGC	2 cut(s)	85, 145
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	15, 90, 133
FokI	GGATG	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	15, 90, 133
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	15, 90, 133
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	11, 78
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	2 cut(s)	20, 57
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	81, 369, 424
HpaII	CCGG	2 cut(s)	11, 78
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	428, 434
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	4 cut(s)	22, 59, 62, 228
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	228, 297
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	4, 132, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 405
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	2 cut(s)	20, 57
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	37, 118, 204, 392, 430
LpnPI	CCDG	7 cut(s)	24, 61, 91, 200, 348, 356, 381
Lsp1109I	GCAGC	2 cut(s)	76, 144
MaeII	ACGT	1 cut(s)	57
MalI	GATC	5 cut(s)	39, 120, 206, 394, 432
MboI	GATC	5 cut(s)	37, 118, 204, 392, 430
MboII	GAAGA	6 cut(s)	21, 125, 227, 294, 301, 366
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	76, 95, 169, 178, 183, 186, 264, 476
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	10
MroNI	GCCGGC	1 cut(s)	10
MspI	CCGG	2 cut(s)	11, 78
MwoI	GCNNNNNNNGC	2 cut(s)	228, 405
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	5 cut(s)	37, 118, 204, 392, 430
NgoMIV	GCCGGC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 93
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	369, 424
PkrI	GCNGC	3 cut(s)	16, 91, 134
Ple19I	CGATCG	2 cut(s)	121, 207
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	463
PspPPI	RGGWCCY	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	37
PvuI	CGATCG	2 cut(s)	121, 207
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	3 cut(s)	15, 90, 133
Sau3AI	GATC	5 cut(s)	37, 118, 204, 392, 430
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	5 cut(s)	60, 197, 259, 336, 465
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	6 cut(s)	14, 35, 92, 138, 161, 399
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	228, 297
TaiI	ACGT	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	386
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	369, 424
TseI	GCWGC	2 cut(s)	89, 132
TspDTI	ATGAA	3 cut(s)	300, 327, 341
TspGWI	ACGGA	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	463
XagI	CCTNNNNNAGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	414
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.