pycom01g16800
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
16285725 .. 16286722
998 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16800.1

Sequence Viewer

Length: 771 bp
ATGTCAGACGGAAGTTTAGAGCAGTGGCTGCACAGAGAAAACCAATCAAGGAGTTTGAGCCTTCACCAAAGATTGAACATTGCAGTTGATGTGGCTTCTGCATTGTACTATCTCCATGACCATTGTGAACAACCAATCATTCACTGTGACTTGAAGCCAACCAACATTCTTCTTGACGATGACATGAATGCTCATGTAGGTGATTTTGGGTTAGCAAGACTCATTTCAACTACCGCGGACTCCTCTCTAAATCAAAGTAGCACAGTTGGAATAACGGGAACCATTGGCTATGCGGCTCCAGAGTACGCAATTGGTGGCGAACCATCAAGACAAGGGGACATATACAGTTATGGGATCCTAGTGTTAGAAATGTTCACTCGAAGAAGACCGACCGAAGAAATGTTCAAAGATGGTTTCAATCTCCATAACTTTGTTAAGATGGAAATACCTGAAAGAACAATGCAGATCGTGGATCCTGCTATCCTCGCCGCTATTGAAGAGAAAGCGCCTGCAGCAAAAGGAAAGGAAGCAAACTACATAAATGGCGAAACTGAGGCGGGAGAAGAAAACATAAACTACGTGAACATAAGTGAAATGAATCCATTTGTGAGCAAGTGCATACTTCCAGTCCTCGAGATTGGGCTCGCGTGCTCGGAAGAATCACCAAAACGGAGAGTGAAAATGCAGGATGTCACCCGGGAGCTGCATCGTATACAAAATGCGTTGATCGATGTCGAAATCCGTCGAGAGAGACCGAAAATCAGTAGCTAA

Protein Analysis

257

Amino Acids

28.71

Weight (kDa)

5.15

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 136 1.8e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 146 5.1e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 712
AccII CGCG 2 cut(s) 236, 647
AciI CCGC 5 cut(s) 234, 236, 293, 489, 557
AclWI GGATC 4 cut(s) 349, 362, 467, 480
AfaI GTAC 2 cut(s) 107, 305
AgsI TTSAA 6 cut(s) 76, 154, 228, 406, 418, 497
AluBI AGCT 2 cut(s) 703, 768
AluI AGCT 2 cut(s) 703, 768
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 4 cut(s) 349, 362, 467, 480
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 2 cut(s) 632, 696
ApeKI GCWGC 3 cut(s) 28, 512, 703
AspLEI GCGC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 697, 698
AsuHPI GGTGA 4 cut(s) 56, 212, 654, 685
AvaI CYCGRG 2 cut(s) 632, 696
BamHI GGATCC 2 cut(s) 354, 472
BanII GRGCYC 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 3 cut(s) 15, 524, 690
BccI CCATC 3 cut(s) 331, 404, 433
BcnI CCSGG 2 cut(s) 697, 698
BcoDI GTCTC 1 cut(s) 745
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 509
BisI GCNGC 5 cut(s) 29, 294, 489, 513, 704
BlsI GCNGC 5 cut(s) 30, 295, 490, 514, 705
Bme1390I CCNGG 2 cut(s) 697, 698
BmeT110I CYCGRG 2 cut(s) 632, 696
BmiI GGNNCC 4 cut(s) 280, 297, 356, 474
BmrFI CCNGG 2 cut(s) 697, 698
BmsI GCATC 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 697, 698
Bsa29I ATCGAT 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 745
BsaJI CCNNGG 2 cut(s) 234, 696
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 78
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 2 cut(s) 234, 696
BseGI GGATG 1 cut(s) 694
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 3 cut(s) 15, 524, 690
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 2 cut(s) 236, 647
Bsh1285I CGRYCG 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 729
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 653
BsiHKCI CYCGRG 2 cut(s) 632, 696
BsiSI CCGG 1 cut(s) 697
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 745
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 745
BsoBI CYCGRG 2 cut(s) 632, 696
Bsp1286I GDGCHC 2 cut(s) 645, 653
Bsp143I GATC 4 cut(s) 354, 465, 472, 726
BspACI CCGC 5 cut(s) 234, 236, 293, 489, 557
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 729
BspFNI CGCG 2 cut(s) 236, 647
BspLI GGNNCC 4 cut(s) 280, 297, 356, 474
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 4 cut(s) 349, 362, 467, 480
BspTNI GGTCTC 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 2 cut(s) 234, 696
BssMI GATC 4 cut(s) 354, 465, 472, 726
BssNAI GTATAC 1 cut(s) 713
Bst1107I GTATAC 1 cut(s) 713
Bst4CI ACNGT 3 cut(s) 146, 265, 347
Bst6I CTCTTC 1 cut(s) 492
BstAPI GCANNNNNTGC 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 510, 645, 649
BstDEI CTNAG 1 cut(s) 552
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 2 cut(s) 236, 647
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 4 cut(s) 357, 468, 475, 729
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 4 cut(s) 354, 465, 472, 726
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 28, 485, 512
BstSCI CCNGG 2 cut(s) 695, 696
BstSFI CTRYAG 1 cut(s) 510
BstUI CGCG 2 cut(s) 236, 647
BstV1I GCAGC 3 cut(s) 15, 524, 690
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 2 cut(s) 354, 472
BstYI RGATCY 2 cut(s) 354, 472
BstZ17I GTATAC 1 cut(s) 713
Bsu15I ATCGAT 1 cut(s) 729
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 694
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 29, 142
Cac8I GCNNGC 3 cut(s) 510, 645, 649
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 508
Cfr42I CCGCGG 1 cut(s) 237
Cfr9I CCCGGG 1 cut(s) 696
ClaI ATCGAT 1 cut(s) 729
Csp6I GTAC 2 cut(s) 106, 304
CviAII CATG 3 cut(s) 116, 184, 194
CviJI RGCY 9 cut(s) 28, 60, 95, 157, 288, 296, 643, 703, 768
CviKI_1 RGCY 9 cut(s) 28, 60, 95, 157, 288, 296, 643, 703, 768
CviQI GTAC 2 cut(s) 106, 304
DdeI CTNAG 1 cut(s) 552
DpnI GATC 4 cut(s) 356, 467, 474, 728
DpnII GATC 4 cut(s) 354, 465, 472, 726
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 745
Eco88I CYCGRG 2 cut(s) 632, 696
EcoT38I GRGCYC 1 cut(s) 645
FaeI CATG 3 cut(s) 119, 187, 197
FaqI GGGAC 1 cut(s) 350
FatI CATG 3 cut(s) 115, 183, 193
FauI CCCGC 1 cut(s) 550
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 5 cut(s) 29, 294, 489, 513, 704
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 5 cut(s) 29, 294, 489, 513, 704
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 507
GluI GCNGC 5 cut(s) 29, 294, 489, 513, 704
GsuI CTGGAG 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 509
HapII CCGG 1 cut(s) 697
HhaI GCGC 1 cut(s) 508
Hin1II CATG 3 cut(s) 119, 187, 197
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 4 cut(s) 219, 239, 598, 659
HpaII CCGG 1 cut(s) 697
HphI GGTGA 4 cut(s) 56, 212, 654, 685
Hpy166II GTNNAC 4 cut(s) 128, 375, 583, 713
Hpy188I TCNGA 2 cut(s) 7, 655
Hpy188III TCNNGA 5 cut(s) 173, 299, 327, 634, 746
Hpy8I GTNNAC 4 cut(s) 128, 375, 583, 713
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 3 cut(s) 146, 265, 347
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 8 cut(s) 31, 83, 101, 463, 512, 618, 685, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 485, 512
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 3 cut(s) 119, 187, 197
HspAI GCGC 1 cut(s) 506
KspI CCGCGG 1 cut(s) 237
Kzo9I GATC 4 cut(s) 354, 465, 472, 726
LmnI GCTCC 2 cut(s) 301, 700
LpnPI CCDG 7 cut(s) 312, 462, 489, 522, 639, 671, 710
Lsp1109I GCAGC 3 cut(s) 15, 524, 690
LweI GCATC 1 cut(s) 715
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 2 cut(s) 146, 691
MalI GATC 4 cut(s) 356, 467, 474, 728
MboI GATC 4 cut(s) 354, 465, 472, 726
MboII GAAGA 7 cut(s) 161, 393, 396, 407, 509, 575, 668
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 354, 472
MhlI GDGCHC 2 cut(s) 645, 653
MluCI AATT 1 cut(s) 309
MlyI GAGTC 2 cut(s) 213, 233
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 253, 494, 547, 641
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 697, 698
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 193
MvnI CGCG 2 cut(s) 236, 647
MwoI GCNNNNNNNGC 3 cut(s) 28, 485, 512
NciI CCSGG 2 cut(s) 697, 698
NdeII GATC 4 cut(s) 354, 465, 472, 726
NlaIII CATG 3 cut(s) 119, 187, 197
NlaIV GGNNCC 4 cut(s) 280, 297, 356, 474
NmuCI GTSAC 2 cut(s) 146, 691
PaeR7I CTCGAG 1 cut(s) 632
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 598, 659
PkrI GCNGC 5 cut(s) 30, 295, 490, 514, 705
PleI GAGTC 2 cut(s) 213, 233
PpsI GAGTC 2 cut(s) 213, 233
Ppu21I YACGTR 1 cut(s) 580
PspN4I GGNNCC 4 cut(s) 280, 297, 356, 474
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 2 cut(s) 354, 472
RsaI GTAC 2 cut(s) 107, 305
RsaNI GTAC 2 cut(s) 106, 304
RseI CAYNNNNRTG 1 cut(s) 198
SacII CCGCGG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 5 cut(s) 29, 294, 489, 513, 704
Sau3AI GATC 4 cut(s) 354, 465, 472, 726
SchI GAGTC 2 cut(s) 213, 233
ScrFI CCNGG 2 cut(s) 697, 698
SduI GDGCHC 2 cut(s) 645, 653
SetI ASST 5 cut(s) 202, 451, 582, 705, 770
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 632
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 632
SmaI CCCGGG 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 1 cut(s) 309
SsiI CCGC 5 cut(s) 234, 236, 293, 489, 557
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 695, 696
TaaI ACNGT 3 cut(s) 146, 265, 347
TaiI ACGT 1 cut(s) 582
TaqI TCGA 5 cut(s) 379, 633, 729, 735, 745
TaqII GACCGA 3 cut(s) 403, 407, 769
TasI AATT 1 cut(s) 309
TatI WGTACW 1 cut(s) 105
TauI GCSGC 2 cut(s) 296, 491
TfiI GAWTC 2 cut(s) 598, 659
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 2 cut(s) 29, 149
TseFI GTSAC 2 cut(s) 146, 691
TseI GCWGC 3 cut(s) 28, 512, 703
Tsp45I GTSAC 2 cut(s) 146, 691
TspDTI ATGAA 2 cut(s) 200, 611
TspGWI ACGGA 3 cut(s) 24, 685, 731
TspMI CCCGGG 1 cut(s) 696
TspRI CASTG 2 cut(s) 29, 149
XhoI CTCGAG 1 cut(s) 632
XmaI CCCGGG 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 712
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.