RchiOBHm_Chr1g0369931
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000248
Physical Location & Seq
Reverse (-)
59560929 .. 59564521
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59416

Sequence Viewer

Length: 3123 bp
ATGGAGAGTTTCACATACCTTCATGTCATCCTTTTCATCAACTTTTTACAACTCACCACTGTTGTAAGTTCATTTGGCAATGAAACCGATCGCTTGGCTTTGCTAAAATTCAAAGATTGCATAGCCTCTGATCCAGATGGGCTGTTGAACTCATGGAATGACTCCGTTTATTACTGCAAATGGCCTGGAATTGCTTGTGGCAGACGGCATCAAAGAGTAACAGCCGTCTACCTACCACACGCTGCTTTGCACGGAACCATATCACCATACATTGGCAACCTCTCCTTTCTTAGGTTCATCAACCTTCAAAACAACAGCTTCTCTAGCAAGATTCCGCAACAAGTTGAACATTTATTCCGGCTCCGACATCTCAATCTCGATACCAACATGTTGGAGGGGGGAATTCCAGTCAACCTGACCTTCTGTGCGGAACTGAGCATCATAAATATTGGACGAAACCGCCTTACCGGCAAAATTCCTTCAGAGATTGGCTCATTGATGAAGCTTGTGTATCTTGATTTTCAGATAAATAATCTGACAGGAGGCATCCCACCTTCATTGGGAAATCTTTCATCAATCACTGTACTTTTCATGGAAGAGAACAATTTGGTGGGCACTGTTCCAGAGGCGCTAGGCCGATTGAGAAGTCTATCAATCTTTGGAATTGGTCTCAATAATCTCTCTGGTTTGATCCCTCCCTCCCTTTTTAACATATCATCTATGAATGCCTTCTCAATTTCATATAATAAATTTAAGGGCAGTATTCCACGCCTCAACATGCCTAATCTCCAAATACTGTACCTTGCCGGAAATGAATTCTCTGGACAAATCCCAGCTTCACTGTCCAATGCTTCTCAGCTTCAAAAGCTTGATTTTGGGGAAAATAATTTTGTTGGCCAACTTCCCGTAAGTTTTGGAAATTTTCCAAATCTCCAGAGGCTCAGAATAACTAAGAATAATCTAGGAACTAATTCATCAAATGATTTGGGATTTATAACATCCTTGACAAATTGCAGCGATCTGTTGCAGCTTTCTCTGAGTAAAAACAATTTTGGAGGTGTTTTACCTAATTCTGTAGCCAATCTCTCAACCCAACTGACTCAACTCTACCTTGCAGGCAATCAAATAGAGGGAATGATTCCTGAAACATTAGAAAATCTTAGCAATTTAATAGTCTTGAGCTTGCAAGAAAACTTGTTCACAGGTACCATTCCAGCTTCTCTTGGGAAGTTACAAAAGCTGCAAATATTATATTTACATTCCAATAGATTATCAAGTCGGTTCCCATCTTTCTTAGGGAACCTCACCCAATTGTTTCAACTCACTATGTTTGAAAATGAATTAGAAGGAAGCATTCCTCCAAATATTGGTAACTGCAAAAATCTGCAGGTGATGGATATATCACACAATAAGCTTAGTGGAGATATACCATCACAGGTCATTGGTCTGTCCTCCTTCTCTCTCTTGCTCAACTTATCACAAAACTCGCTTACTGGCATTCTGCCTGCGGAAGTGGGTAAGCTAAAGAATATCAATATACTGGACATCTCTTATAATAATTTGACCGGAGGAATTCCAGAAATTATTGGAGGCTGTCTGAGCCTTGAATTCCTTCACCTACAAGGGAACCACTTTCAAGGAATCATACCTTCTTCTTTGTCTGCTTTGAGAGGTCTTCAGTATCTAGATCTTTCACAAAATAACTTGTCAGGACATATTCCAAAAGACCTACAGTGGCTTCCATTCTTGAATTATTTGAACCTTTCGTCTAATAATCTGGAGGGTGAGGCACCGAAAGGAGGAGTTTTTCAAAATACAAGTGCAATATCATTGAATGGAAATACCAAACTTTGTGGTGGTGTTTCGGAATTGCAGCTACCAACATGCCCGATCAAAGTCCCAAAGCAGAGAAAGTTGCACGGCTTCAAACTAAAGTTCACAATTTCTTTAGTCGCTGGATGCTCTCTTCTGTTTGCAGTGATCATAGCTCTTTATTGGAGGAGAAAAACTCAAAAGAATAAACCGCTATCTGTAGTGCCATCAATCAAATTCCTTCCAAAGGTTTCATACCATACACTTCATCAAGCTACTGGCGGATTCTCTCTAAGCAATCAAATTGGATCAGGAGGTTTTGGCTCTGTATACAAAGGGATTATTGATCAAGAAGAAAACAATGTTGTTGCCATTAAGGTCCTCAACCTTAAAGAGAAAGGAGCTTCTAAGAGTTTCATGGCAGAATGCAATGCACTAAGAAATATCCGGCACAGGAACCTTGTGAAGATCTTAACATGTTGCTCCAGCACAGATTACAATGGTAATGACTTCAAAGCTCTAGTTTTTGAGAATATGTCAAATGGAAGTCTAGAGGAGTGGCTGCACAAAGAAAACCAATCAAGGAGTTTGAACCTTCTTCAAAGACTGAATATTGTTGTTGATGTGGCTTCTGCGTTGTGTTATCTTCATGACCATTGTGAACCACAAATCATTCACTGCGACATTAAGCCGAGCAACGTTCTTCTTGATGATGACATGGTTGCTCATGTTGGTGACTTTGGGTTAGCAAGACTCATCTCAACGATAACGGACTCCTCTCAAAATCAAAGTAGCACAGTTGGGGTAAAAGGAACAATTGGCTATGTTGCTCCAGAGTATGCGAGTGGTGTTGAGCCATCAAGACAAGGGGATGTATATAGTTATGGGGTGTTCGTGTTGCAAATGTTCACAGGAAGAAGACCTATCGACGAAATGTTTAAAGAGGGTTTGAACCTCCATAACTTTGTCAAGATGGCCATACCAGAAAGAGTGATGGAGATTGTAGATCCTACTCTTCTTGCCACTTTAGAAGAGAGAGCACCTACAACATCACAAAATGTAGTGAATTACATCAGTGGTTACAATAATGAAATCGAAGCAGTTGAAGAAAACATTGACAATGAATATTTAAGCAAGATGAACACTTATGTGTGGAAGTGCATACTTCCAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATGTCTATGGAGGAGGTCCACAGGAAGCTACACCATATAAAAGATGCTTGCACTGGTGTTGACATCTGTCAAGAAAGGCCAAGAAGAAGCTGA

Protein Analysis

1040

Amino Acids

114.85

Weight (kDa)

7.54

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 28 - 66 5.6e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 89 - 242 4.9e-09 Leucine-rich repeat region
LRR_8 PF13855 261 - 321 4.9e-06 Leucine rich repeat
LRR_14 PF23598 336 - 444 2e-06 Leucine-rich repeat region
LRR_8 PF13855 365 - 424 7.8e-10 Leucine rich repeat
LRR_8 PF13855 490 - 545 5.2e-06 Leucine rich repeat
LRR_8 PF13855 535 - 593 7.6e-09 Leucine rich repeat
Pkinase PF00069 701 - 928 6.1e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 702 - 919 1.2e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 995, 1554
AarI CACCTGC 1 cut(s) 1378
Acc36I ACCTGC 1 cut(s) 1378
Acc65I GGTACC 1 cut(s) 1205
AccB1I GGYRCC 2 cut(s) 1205, 1789
AccB7I CCANNNNNTGG 2 cut(s) 272, 1367
AccI GTMKAC 2 cut(s) 228, 2142
AciI CCGC 6 cut(s) 335, 428, 460, 1508, 2024, 2094
AclI AACGTT 1 cut(s) 2511
AclWI GGATC 4 cut(s) 125, 685, 2128, 2813
AcoI YGGCCR 2 cut(s) 895, 2787
AcsI RAATTY 9 cut(s) 107, 402, 474, 749, 815, 919, 1572, 1607, 2048
AcuI CTGAAG 2 cut(s) 465, 1661
AfaI GTAC 3 cut(s) 585, 800, 1207
AfiI CCNNNNNNNGG 6 cut(s) 272, 291, 560, 1367, 1799, 2059
AflII CTTAAG 1 cut(s) 2987
AflIII ACRYGT 2 cut(s) 387, 2288
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 2960
AloI GAACNNNNNNTCC 2 cut(s) 339, 371
Alw21I GWGCWC 1 cut(s) 2854
Alw26I GTCTC 1 cut(s) 674
AlwI GGATC 4 cut(s) 125, 685, 2128, 2813
AoxI GGCC 5 cut(s) 182, 634, 895, 2787, 3107
ApeKI GCWGC 6 cut(s) 242, 1014, 1027, 1240, 1873, 2374
ApoI RAATTY 9 cut(s) 107, 402, 474, 749, 815, 919, 1572, 1607, 2048
Asp700I GAANNNNTTC 4 cut(s) 568, 728, 970, 1611
Asp718I GGTACC 1 cut(s) 1205
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 2 cut(s) 2191, 3046
AsuHPI GGTGA 8 cut(s) 46, 255, 1297, 1402, 1607, 1796, 2558, 3009
AvaII GGWCC 2 cut(s) 2191, 3046
BaeGI GKGCMC 1 cut(s) 617
BalI TGGCCA 2 cut(s) 897, 2789
BanI GGYRCC 2 cut(s) 1205, 1789
BbsI GAAGAC 2 cut(s) 1667, 2737
Bbv12I GWGCWC 1 cut(s) 2854
BbvI GCAGC 6 cut(s) 229, 1026, 1039, 1227, 1885, 2361
BccI CCATC 8 cut(s) 131, 1294, 1387, 1438, 2047, 2677, 2779, 2800
BceAI ACGGC 3 cut(s) 209, 221, 1936
BciT130I CCWGG 1 cut(s) 186
BclI TGATCA 2 cut(s) 1980, 2158
BcoDI GTCTC 1 cut(s) 674
BfaI CTAG 6 cut(s) 324, 632, 962, 1685, 2333, 2363
BfmI CTRYAG 4 cut(s) 1074, 1385, 1730, 2031
BfoI RGCGCY 1 cut(s) 632
BfrI CTTAAG 1 cut(s) 2987
BfuAI ACCTGC 1 cut(s) 1378
BglI GCCNNNNNGGC 1 cut(s) 468
BglII AGATCT 2 cut(s) 1687, 2280
BisI GCNGC 6 cut(s) 243, 1015, 1028, 1241, 1874, 2375
BlsI GCNGC 6 cut(s) 244, 1016, 1029, 1242, 1875, 2376
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 2191, 3046
BmgT120I GGNCC 2 cut(s) 2191, 3046
BmiI GGNNCC 8 cut(s) 256, 362, 1207, 1283, 1301, 1628, 1791, 2270
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 5 cut(s) 217, 447, 555, 1949, 3064
BoxI GACNNNNGTC 1 cut(s) 3096
BpiI GAAGAC 2 cut(s) 1667, 2737
BplI GAGNNNNNCTC 4 cut(s) 476, 508, 1993, 2025
BpmI CTGGAG 4 cut(s) 917, 1799, 2281, 2628
BpuEI CTTGAG 1 cut(s) 1198
BsaI GGTCTC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 3020
BsaWI WCCGGW 1 cut(s) 1565
Bsc4I CCNNNNNNNGG 6 cut(s) 272, 291, 560, 1367, 1799, 2059
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 5 cut(s) 407, 1498, 1545, 2095, 3088
Bse3DI GCAATG 2 cut(s) 85, 2248
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 3020
BseGI GGATG 5 cut(s) 27, 546, 998, 1964, 2689
BseLI CCNNNNNNNGG 6 cut(s) 272, 291, 560, 1367, 1799, 2059
BseMI GCAATG 2 cut(s) 85, 2248
BseMII CTCAG 5 cut(s) 425, 869, 955, 1028, 1589
BseNI ACTGG 5 cut(s) 407, 1498, 1545, 2095, 3088
BseRI GAGGAG 5 cut(s) 1815, 2014, 2381, 2578, 3056
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 6 cut(s) 229, 1026, 1039, 1227, 1885, 2361
BseYI CCCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 2360
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 5 cut(s) 184, 636, 897, 2789, 3109
BshNI GGYRCC 2 cut(s) 1205, 1789
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 2854
BsiSI CCGG 5 cut(s) 358, 468, 807, 1566, 2260
BslFI GGGAC 1 cut(s) 1883
BslI CCNNNNNNNGG 6 cut(s) 272, 291, 560, 1367, 1799, 2059
BsmAI GTCTC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 1883
BsmI GAATGC 4 cut(s) 730, 1353, 1497, 2243
BsnI GGCC 5 cut(s) 184, 636, 897, 2789, 3109
Bso31I GGTCTC 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 617, 2854
BspACI CCGC 6 cut(s) 335, 428, 460, 1508, 2024, 2094
BspANI GGCC 5 cut(s) 184, 636, 897, 2789, 3109
BspCNI CTCAG 5 cut(s) 426, 868, 954, 1029, 1590
BspHI TCATGA 1 cut(s) 2461
BspLI GGNNCC 8 cut(s) 256, 362, 1207, 1283, 1301, 1628, 1791, 2270
BspMAI CTGCAG 1 cut(s) 1389
BspMI ACCTGC 1 cut(s) 1378
BspPI GGATC 4 cut(s) 125, 685, 2128, 2813
BspT107I GGYRCC 2 cut(s) 1205, 1789
BspTI CTTAAG 1 cut(s) 2987
BspTNI GGTCTC 1 cut(s) 674
BsrDI GCAATG 2 cut(s) 85, 2248
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 5 cut(s) 407, 1498, 1545, 2095, 3088
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 3020
BssNAI GTATAC 1 cut(s) 2143
BssT1I CCWWGG 1 cut(s) 3020
Bst1107I GTATAC 1 cut(s) 2143
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 7 cut(s) 61, 583, 619, 798, 843, 1734, 2611
Bst6I CTCTTC 4 cut(s) 591, 1971, 2832, 2838
BstAFI CTTAAG 1 cut(s) 2987
BstC8I GCNNGC 5 cut(s) 1117, 1184, 1506, 3004, 3079
BstENI CCTNNNNNAGG 2 cut(s) 289, 2057
BstF5I GGATG 5 cut(s) 27, 546, 998, 1964, 2689
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 1 cut(s) 631
BstMAI GTCTC 1 cut(s) 674
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 324, 468, 865, 1599
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 5 cut(s) 391, 781, 1887, 2292, 3006
BstPAI GACNNNNGTC 1 cut(s) 3096
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 4 cut(s) 1074, 1385, 1730, 2031
BstSLI GKGCMC 1 cut(s) 617
BstV1I GCAGC 6 cut(s) 229, 1026, 1039, 1227, 1885, 2361
BstV2I GAAGAC 2 cut(s) 1667, 2737
BstX2I RGATCY 3 cut(s) 1687, 2280, 2818
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 3 cut(s) 1687, 2280, 2818
BstZ17I GTATAC 1 cut(s) 2143
BsuRI GGCC 5 cut(s) 184, 636, 897, 2789, 3109
BtsCI GGATG 5 cut(s) 27, 546, 998, 1964, 2689
BtsI GCAGTG 2 cut(s) 1983, 2488
BtsIMutI CAGTG 9 cut(s) 57, 579, 615, 839, 1739, 1983, 2488, 2893, 3081
BveI ACCTGC 1 cut(s) 1378
Cac8I GCNNGC 5 cut(s) 1117, 1184, 1506, 3004, 3079
CciI TCATGA 1 cut(s) 2461
CfoI GCGC 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 2191, 3046
Csp6I GTAC 3 cut(s) 584, 799, 1206
CspCI CAANNNNNGTGG 4 cut(s) 540, 575, 1834, 1869
CviQI GTAC 3 cut(s) 584, 799, 1206
DraI TTTAAA 1 cut(s) 2752
EaeI YGGCCR 2 cut(s) 895, 2787
Eam1104I CTCTTC 4 cut(s) 591, 1971, 2832, 2838
EarI CTCTTC 4 cut(s) 591, 1971, 2832, 2838
EciI GGCGGA 1 cut(s) 2109
Eco130I CCWWGG 1 cut(s) 3020
Eco31I GGTCTC 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 2191, 3046
Eco57I CTGAAG 2 cut(s) 465, 1661
EcoNI CCTNNNNNAGG 2 cut(s) 289, 2057
EcoO109I RGGNCCY 1 cut(s) 2191
EcoRI GAATTC 4 cut(s) 402, 815, 1572, 1607
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 3020
ErhI CCWWGG 1 cut(s) 3020
FaqI GGGAC 1 cut(s) 1883
FbaI TGATCA 2 cut(s) 1980, 2158
FblI GTMKAC 2 cut(s) 228, 2142
Fnu4HI GCNGC 6 cut(s) 243, 1015, 1028, 1241, 1874, 2375
FokI GGATG 5 cut(s) 14, 533, 985, 1971, 2696
Fsp4HI GCNGC 6 cut(s) 243, 1015, 1028, 1241, 1874, 2375
FspBI CTAG 6 cut(s) 324, 632, 962, 1685, 2333, 2363
GlaI GCGC 1 cut(s) 630
GluI GCNGC 6 cut(s) 243, 1015, 1028, 1241, 1874, 2375
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 4 cut(s) 917, 1799, 2281, 2628
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 5 cut(s) 184, 636, 897, 2789, 3109
HapII CCGG 5 cut(s) 358, 468, 807, 1566, 2260
HhaI GCGC 1 cut(s) 631
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HincII GTYRAC 2 cut(s) 412, 3091
HindII GTYRAC 2 cut(s) 412, 3091
HindIII AAGCTT 3 cut(s) 503, 866, 1412
HinfI GANTC 9 cut(s) 161, 331, 1099, 1138, 1641, 2097, 2565, 2585, 3014
HpaII CCGG 5 cut(s) 358, 468, 807, 1566, 2260
HphI GGTGA 8 cut(s) 46, 255, 1297, 1402, 1607, 1796, 2558, 3009
Hpy166II GTNNAC 9 cut(s) 229, 412, 1200, 1938, 2143, 2474, 2721, 3049, 3091
Hpy8I GTNNAC 9 cut(s) 229, 412, 1200, 1938, 2143, 2474, 2721, 3049, 3091
Hpy99I CGWCG 1 cut(s) 2744
HpyCH4III ACNGT 7 cut(s) 61, 583, 619, 798, 843, 1734, 2611
HpyCH4IV ACGT 1 cut(s) 2511
HpyF10VI GCNNNNNNNGC 4 cut(s) 324, 468, 865, 1599
HpySE526I ACGT 1 cut(s) 2511
HspAI GCGC 1 cut(s) 629
KpnI GGTACC 1 cut(s) 1209
Ksp22I TGATCA 2 cut(s) 1980, 2158
LmnI GCTCC 4 cut(s) 366, 2213, 2300, 2647
Lsp1109I GCAGC 6 cut(s) 229, 1026, 1039, 1227, 1885, 2361
LweI GCATC 5 cut(s) 217, 447, 555, 1949, 3064
MaeI CTAG 6 cut(s) 324, 632, 962, 1685, 2333, 2363
MaeII ACGT 1 cut(s) 2511
MaeIII GTNAC 5 cut(s) 217, 1230, 1370, 2546, 2891
MfeI CAATTG 2 cut(s) 1310, 2628
MflI RGATCY 3 cut(s) 1687, 2280, 2818
MhlI GDGCHC 2 cut(s) 617, 2854
MlsI TGGCCA 2 cut(s) 897, 2789
MluNI TGGCCA 2 cut(s) 897, 2789
MlyI GAGTC 4 cut(s) 155, 1093, 2559, 2579
MmeI TCCRAC 3 cut(s) 372, 388, 3005
Mox20I TGGCCA 2 cut(s) 897, 2789
MroXI GAANNNNTTC 4 cut(s) 568, 728, 970, 1611
MscI TGGCCA 2 cut(s) 897, 2789
MslI CAYNNNNRTG 2 cut(s) 2544, 2960
Msp20I TGGCCA 2 cut(s) 897, 2789
MspCI CTTAAG 1 cut(s) 2987
MspI CCGG 5 cut(s) 358, 468, 807, 1566, 2260
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 2 cut(s) 1310, 2628
Mva1269I GAATGC 4 cut(s) 730, 1353, 1497, 2243
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 324, 468, 865, 1599
NlaIV GGNNCC 8 cut(s) 256, 362, 1207, 1283, 1301, 1628, 1791, 2270
NmeAIII GCCGAG 1 cut(s) 2529
NmuCI GTSAC 1 cut(s) 2546
NspI RCATGY 5 cut(s) 391, 781, 1887, 2292, 3006
OliI CACNNNNGTG 1 cut(s) 2960
PaeI GCATGC 1 cut(s) 3006
PagI TCATGA 1 cut(s) 2461
PaqCI CACCTGC 1 cut(s) 1378
PciI ACATGT 2 cut(s) 387, 2288
PctI GAATGC 4 cut(s) 730, 1353, 1497, 2243
PdmI GAANNNNTTC 4 cut(s) 568, 728, 970, 1611
PfeI GAWTC 5 cut(s) 331, 1138, 1641, 2097, 3014
PflMI CCANNNNNTGG 2 cut(s) 272, 1367
PkrI GCNGC 6 cut(s) 244, 1016, 1029, 1242, 1875, 2376
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 4 cut(s) 155, 1093, 2559, 2579
PpsI GAGTC 4 cut(s) 155, 1093, 2559, 2579
PpuMI RGGWCCY 1 cut(s) 2191
PscI ACATGT 2 cut(s) 387, 2288
PshAI GACNNNNGTC 1 cut(s) 3096
PsiI TTATAA 2 cut(s) 995, 1554
Psp1406I AACGTT 1 cut(s) 2511
Psp5II RGGWCCY 1 cut(s) 2191
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 8 cut(s) 256, 362, 1207, 1283, 1301, 1628, 1791, 2270
PspPI GGNCC 2 cut(s) 2191, 3046
PspPPI RGGWCCY 1 cut(s) 2191
PstI CTGCAG 1 cut(s) 1389
PsuI RGATCY 3 cut(s) 1687, 2280, 2818
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 3 cut(s) 585, 800, 1207
RsaNI GTAC 3 cut(s) 584, 799, 1206
RseI CAYNNNNRTG 2 cut(s) 2544, 2960
SatI GCNGC 6 cut(s) 243, 1015, 1028, 1241, 1874, 2375
Sau96I GGNCC 2 cut(s) 2191, 3046
SchI GAGTC 4 cut(s) 155, 1093, 2559, 2579
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 2 cut(s) 617, 2854
SfaNI GCATC 5 cut(s) 217, 447, 555, 1949, 3064
SfcI CTRYAG 4 cut(s) 1074, 1385, 1730, 2031
SinI GGWCC 2 cut(s) 2191, 3046
SmiMI CAYNNNNRTG 2 cut(s) 2544, 2960
SmlI CTYRAG 2 cut(s) 1177, 2987
SmoI CTYRAG 2 cut(s) 1177, 2987
SphI GCATGC 1 cut(s) 3006
SsiI CCGC 6 cut(s) 335, 428, 460, 1508, 2024, 2094
SspI AATATT 5 cut(s) 448, 1248, 1366, 2425, 2939
SspMI CTAG 6 cut(s) 324, 632, 962, 1685, 2333, 2363
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 3020
TaaI ACNGT 7 cut(s) 61, 583, 619, 798, 843, 1734, 2611
TaiI ACGT 1 cut(s) 2514
TaqI TCGA 3 cut(s) 378, 2739, 2907
TatI WGTACW 1 cut(s) 583
TfiI GAWTC 5 cut(s) 331, 1138, 1641, 2097, 3014
TscAI CASTG 9 cut(s) 64, 586, 622, 846, 1739, 1983, 2495, 2893, 3088
TseFI GTSAC 1 cut(s) 2546
TseI GCWGC 6 cut(s) 242, 1014, 1027, 1240, 1873, 2374
Tsp45I GTSAC 1 cut(s) 2546
TspGWI ACGGA 3 cut(s) 154, 267, 2597
TspRI CASTG 9 cut(s) 64, 586, 622, 846, 1739, 1983, 2495, 2893, 3088
Van91I CCANNNNNTGG 2 cut(s) 272, 1367
Vha464I CTTAAG 1 cut(s) 2987
VpaK11BI GGWCC 2 cut(s) 2191, 3046
XagI CCTNNNNNAGG 2 cut(s) 289, 2057
XapI RAATTY 9 cut(s) 107, 402, 474, 749, 815, 919, 1572, 1607, 2048
XbaI TCTAGA 2 cut(s) 1684, 2362
XceI RCATGY 5 cut(s) 391, 781, 1887, 2292, 3006
XmiI GTMKAC 2 cut(s) 228, 2142
XmnI GAANNNNTTC 4 cut(s) 568, 728, 970, 1611
XspI CTAG 6 cut(s) 324, 632, 962, 1685, 2333, 2363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.