MD01G1131800.v1.1

LRR receptor-like serine threonine-protein kinase At3g47570

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
24213666 .. 24214484
819 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1131800.v1.1.491

Sequence Viewer

Length: 819 bp
ATGCTGCCTCAATGCTTAGTCAACCTGTCTTCTTCACTTGTATATTTCTACGCAGACTATAATAGTATATTTGGCAGTATCCCAAATGTGATGGAAAATCTGCATAACCTGGAAGCCATTTCGCTGTTTGGCAACCATTTTTCAGGTCTCATCCCCCCTGAAATAGGAAAGCTTACCAAATTATATGAAGTATACATGGGAAACAACTCACTCTCTGGGAATGTTCCATCATCTTTTGGAAATTTGAGTCGATTAACTGATCTGCATCTCAAGGATAACAACCATCAGGGCACCATCCCTTCAACATTATCTCAATGTCCCAATTTTGTGAACTTAACTCTTGGTGGTAACAATTTCACTGGTATCATATCCCCAGAATTAATTCATCTGTCTTCTTCATATGTTCATTTGGATTTATCTCGTAACCATTTGACTAGTTGTCTTCCTATTGAAGTCGGACAACTGATAAATCTAGAGCATTTTGATGTTTCTGGAAACCTGTTGTCTGGTGAAATTCCTCCAAGTCTTGGAAGTTGTAAAACCACACGGTATCTTTACTTGCAAGAAAACTTCTTCCAAGGGACAATTCCATCAAATTTGAGATCACTAAGAGGTATTGAAACCTTATCTCTCGCTTGCAACAACTTGTTAGGGACAATTCCGAAATTCTTAGAGAATTTTACATTTCTGCAATCCTTGAATCTGTATTATAACAATTTAGAGGAAGCGGTACCTATCGAAGGAGTTTTTTCGGAATGCAACTGGCACATCAGTACAAGGGAATGCAAAGCTCTGTGGGGGCATACGAAAATACTGTAA

Protein Analysis

273

Amino Acids

30.23

Weight (kDa)

5.63

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 60 - 119 3.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
Acc65I GGTACC 1 cut(s) 730
AccB1I GGYRCC 2 cut(s) 290, 730
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 192
AciI CCGC 1 cut(s) 728
AcsI RAATTY 5 cut(s) 241, 513, 595, 665, 676
AfaI GTAC 2 cut(s) 732, 775
AfiI CCNNNNNNNGG 3 cut(s) 164, 527, 740
AgsI TTSAA 4 cut(s) 303, 452, 620, 700
AhdI GACNNNNNGTC 1 cut(s) 438
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 2 cut(s) 172, 791
AluI AGCT 2 cut(s) 172, 791
Alw26I GTCTC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 5 cut(s) 241, 513, 595, 665, 676
AseI ATTAAT 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 381
Asp718I GGTACC 1 cut(s) 730
AsuHPI GGTGA 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 293
BanI GGYRCC 2 cut(s) 290, 730
BbsI GAAGAC 3 cut(s) 21, 384, 434
BccI CCATC 5 cut(s) 85, 235, 291, 302, 598
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 2 cut(s) 435, 473
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 110
BmeRI GACNNNNNGTC 1 cut(s) 438
BmiI GGNNCC 2 cut(s) 292, 732
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 3 cut(s) 21, 384, 434
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 577
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 527, 740
Bse1I ACTGG 2 cut(s) 364, 767
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 577
BseGI GGATG 2 cut(s) 150, 294
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 3 cut(s) 164, 527, 740
BseNI ACTGG 2 cut(s) 364, 767
BseSI GKGCMC 1 cut(s) 293
BshNI GGYRCC 2 cut(s) 290, 730
BslFI GGGAC 3 cut(s) 303, 595, 667
BslI CCNNNNNNNGG 3 cut(s) 164, 527, 740
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 303, 595, 667
BsmI GAATGC 2 cut(s) 761, 788
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 259, 602
BspACI CCGC 1 cut(s) 728
BspLI GGNNCC 2 cut(s) 292, 732
BspT107I GGYRCC 2 cut(s) 290, 730
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 364, 767
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 2 cut(s) 259, 602
BssNAI GTATAC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 577
Bst1107I GTATAC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 549, 816
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 3 cut(s) 16, 608, 670
BstENI CCTNNNNNAGG 2 cut(s) 162, 738
BstF5I GGATG 2 cut(s) 150, 294
BstKTI GATC 2 cut(s) 262, 605
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 259, 602
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 293
BstV2I GAAGAC 3 cut(s) 21, 384, 434
BstZ17I GTATAC 1 cut(s) 193
BsuI GTATCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 150, 294
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 637
Csp6I GTAC 2 cut(s) 731, 774
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 116, 172, 791
CviKI_1 RGCY 3 cut(s) 116, 172, 791
CviQI GTAC 2 cut(s) 731, 774
DdeI CTNAG 3 cut(s) 16, 608, 670
DpnI GATC 2 cut(s) 261, 604
DpnII GATC 2 cut(s) 259, 602
DriI GACNNNNNGTC 1 cut(s) 438
Eam1105I GACNNNNNGTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 152
EcoNI CCTNNNNNAGG 2 cut(s) 162, 738
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 1 cut(s) 199
FaqI GGGAC 3 cut(s) 303, 595, 667
FatI CATG 1 cut(s) 195
FauNDI CATATG 1 cut(s) 400
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 137, 281
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 435, 473
GluI GCNGC 1 cut(s) 5
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 247, 700
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 3 cut(s) 22, 193, 331
Hpy188I TCNGA 3 cut(s) 458, 663, 754
Hpy188III TCNNGA 2 cut(s) 473, 492
Hpy8I GTNNAC 3 cut(s) 22, 193, 331
HpyAV CCTTC 2 cut(s) 309, 734
HpyCH4III ACNGT 2 cut(s) 549, 816
HpyCH4V TGCA 7 cut(s) 103, 265, 562, 639, 691, 759, 786
HpyF3I CTNAG 3 cut(s) 16, 608, 670
Hsp92II CATG 1 cut(s) 199
KpnI GGTACC 1 cut(s) 734
Kzo9I GATC 2 cut(s) 259, 602
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 435, 473
MaeIII GTNAC 2 cut(s) 347, 422
MalI GATC 2 cut(s) 261, 604
MboI GATC 2 cut(s) 259, 602
MboII GAAGA 6 cut(s) 21, 24, 384, 387, 434, 565
MhlI GDGCHC 1 cut(s) 293
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 4 cut(s) 18, 528, 605, 715
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 3 cut(s) 254, 335, 380
MslI CAYNNNNRTG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 2 cut(s) 761, 788
MvaI CCWGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 259, 602
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 292, 732
PctI GAATGC 2 cut(s) 761, 788
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 700
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 380
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 292, 732
RsaI GTAC 2 cut(s) 732, 775
RsaNI GTAC 2 cut(s) 731, 774
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 3 cut(s) 254, 335, 380
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 259, 602
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 293
SetI ASST 9 cut(s) 27, 111, 148, 174, 501, 616, 626, 736, 793
SfaNI GCATC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SpeI ACTAGT 1 cut(s) 434
SsiI CCGC 1 cut(s) 728
SspMI CTAG 2 cut(s) 435, 473
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 2 cut(s) 549, 816
TaqI TCGA 2 cut(s) 250, 738
TatI WGTACW 1 cut(s) 773
TfiI GAWTC 1 cut(s) 700
Tru1I TTAA 3 cut(s) 254, 335, 380
Tru9I TTAA 3 cut(s) 254, 335, 380
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 201, 374, 387, 395
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 527
VspI ATTAAT 1 cut(s) 380
XagI CCTNNNNNAGG 2 cut(s) 162, 738
XapI RAATTY 5 cut(s) 241, 513, 595, 665, 676
XbaI TCTAGA 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 2 cut(s) 435, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.