Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

7903014 .. 7904114

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAGCCAAGCAACATTCTTCTTAATGATGACATGGTTGCCCGTTTCGGTGATTTTGGGTTAGCAAGACTTATACCACTGACGGCAGACGACTCTGATAATCAAAGTAGCACAGTTGGGATAAAGGGAACCATTGGCTATGCTGCTCCAGAGTATGCAGTTGGTGTTGAGCCATCAAAAGAAGGGGATGTATATAGTTATGGAATCCTTGTGTTGCAATTATTCACGGGAAGAAGACCCACTGATGAAATGTTTGTAAACGGTTGCAATATCCATACTTTTGTTAAGACGACCATATCAGGAAGACTCGTGCAAATTGTGGATCCTAGTCTTGTTGCCACTCTAGAAGAGACTGCAACTCCAACAACAAACAATGAAGTGACCAACATCCATGGTTACAACAATGAAATTGAAGCTGATGAAGGCTCTATTGACAATGAGAATTTAAGCACAATGAACACTTACGTGTGGAAGTGCGTACTCCCAATCCTCAAGATTGGACTTGCATGCTCAGAAGTATCACCAAGGAGTAGGATGTCTATGGCGGAGGTCCACAGGAAACTACGCCGTATAAAAAATGCTTACACTAGTGTTGACATCTGTCGAGAGAGACCAGAAGATGCTAATCAGGAGGTGCTGTTGTTTTCTTCGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

24.05

Weight (kDa)

4.86

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 83	7e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 87	5.3e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	2 cut(s)	317, 330
AcsI	RAATTY	1 cut(s)	442
AfaI	GTAC	1 cut(s)	480
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	413
AhlI	ACTAGT	1 cut(s)	587
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	2 cut(s)	344, 604
AlwI	GGATC	2 cut(s)	317, 330
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	62, 513
AvaII	GGWCC	1 cut(s)	550
BamHI	GGATCC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	2 cut(s)	241, 310
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	2 cut(s)	99, 552
BcoDI	GTCTC	2 cut(s)	344, 604
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	3 cut(s)	327, 344, 588
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	2 cut(s)	130, 324
BmsI	GCATC	1 cut(s)	610
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	241, 310
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	466
BsaBI	GATNNNNATC	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	2 cut(s)	391, 524
BsaXI	ACNNNNNCTCC	4 cut(s)	343, 373, 623, 653
Bse8I	GATNNNNATC	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	391, 524
BseGI	GGATG	3 cut(s)	193, 387, 540
BseJI	GATNNNNATC	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	344, 604
Bso31I	GGTCTC	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	1 cut(s)	545
BspCNI	CTCAG	1 cut(s)	524
BspLI	GGNNCC	2 cut(s)	130, 324
BspPI	GGATC	2 cut(s)	317, 330
BspTNI	GGTCTC	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	391, 524
BssMI	GATC	1 cut(s)	322
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	2 cut(s)	391, 524
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	115, 263
Bst6I	CTCTTC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	511
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	193, 387, 540
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	2 cut(s)	344, 604
BstMBI	GATC	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	510
BstPAI	GACNNNNGTC	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	2 cut(s)	241, 310
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	193, 387, 540
BtsIMutI	CAGTG	2 cut(s)	77, 240
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	3 cut(s)	34, 392, 507
CviJI	RGCY	5 cut(s)	7, 138, 172, 416, 426
CviKI_1	RGCY	5 cut(s)	7, 138, 172, 416, 426
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	1 cut(s)	511
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	391, 524
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	391, 524
ErhI	CCWWGG	2 cut(s)	391, 524
FaeI	CATG	3 cut(s)	37, 395, 510
FatI	CATG	3 cut(s)	33, 391, 506
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	3 cut(s)	200, 374, 547
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	3 cut(s)	327, 344, 588
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	132
Hin1II	CATG	3 cut(s)	37, 395, 510
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	3 cut(s)	92, 204, 306
HphI	GGTGA	2 cut(s)	62, 513
Hpy166II	GTNNAC	3 cut(s)	259, 553, 595
Hpy188I	TCNGA	2 cut(s)	97, 514
Hpy188III	TCNNGA	6 cut(s)	149, 300, 344, 493, 605, 629
Hpy8I	GTNNAC	3 cut(s)	259, 553, 595
HpyAV	CCTTC	2 cut(s)	176, 416
HpyCH4III	ACNGT	2 cut(s)	115, 263
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	158, 217, 267, 313, 356, 506
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	3 cut(s)	37, 395, 510
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	162, 285, 541, 614, 627
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	3 cut(s)	327, 344, 588
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	379, 395
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	7 cut(s)	11, 243, 246, 315, 359, 629, 639
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	4 cut(s)	218, 315, 408, 442
MlyI	GAGTC	2 cut(s)	86, 300
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	500, 541, 625
MseI	TTAA	3 cut(s)	24, 285, 446
MslI	CAYNNNNRTG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	3 cut(s)	37, 395, 510
NlaIV	GGNNCC	2 cut(s)	130, 324
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	510
OliI	CACNNNNGTG	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	86, 300
PpsI	GAGTC	2 cut(s)	86, 300
Ppu21I	YACGTR	1 cut(s)	466
PshAI	GACNNNNGTC	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	130, 324
PspPI	GGNCC	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	24, 285, 446
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	2 cut(s)	86, 300
SetI	ASST	4 cut(s)	418, 468, 552, 636
SfaNI	GCATC	1 cut(s)	610
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	587
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	4 cut(s)	218, 315, 408, 442
SsiI	CCGC	1 cut(s)	545
SspMI	CTAG	3 cut(s)	327, 344, 588
StyI	CCWWGG	2 cut(s)	391, 524
TaaI	ACNGT	2 cut(s)	115, 263
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	604
TasI	AATT	4 cut(s)	218, 315, 408, 442
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	3 cut(s)	24, 285, 446
Tru9I	TTAA	3 cut(s)	24, 285, 446
TscAI	CASTG	2 cut(s)	84, 247
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	6 cut(s)	17, 261, 390, 420, 435, 470
TspRI	CASTG	2 cut(s)	84, 247
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	1 cut(s)	442
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	1 cut(s)	510
XspI	CTAG	3 cut(s)	327, 344, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.